MELO3C029904.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C029904.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionGirdin-like
Locationchr03: 8999147 .. 9000400 (+)
RNA-Seq ExpressionMELO3C029904.jh1
SyntenyMELO3C029904.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATCCAACATATCCAAGGAAGGAGGTTTGAGTGTCTTTATTTACGAAAATGACTTCTGAAAATGTCATATGGAAGGCTCAATGGATGCCTTTGAAGGTAGTGATATATAGATGTAGAGATTTTCACAGTGTGCCTTTGTTGGGACCATGAGGAGGTGTTAACTATACACCATTGTTAGTTTTGCATCAGTTGTGGCTCAAACAATTTATACCACCAACTTATAATCTACAAGAGTCTGACTTTTCATACGATCCTGAAGATTGTTAAGGAAAAAAACGTCTAGCAATATGCGCATGGAAATCTATGAGGAAGATAAAAGACAAAGGACATTACGAAGGTGTTACTAGTGGATACGAGGAATGACAGGCAAACAGAAGGAAGAATATAATAGTTATCTCAAGGGAGGTAGTTGAAAGGGTAAAAGAGACAAGCTTCAAACAACTAATCAATGGGTAGAGAAGAACATAGAACTAGAAGAGAAAAATCGACTGTTAGAGCATGAGAATGAGAAACTTCGTAAAGAGACACAAGTCAATAGATAGATCATGCGTCCTATTTGCAGAAAGAACTTGAAAAGACCAAGAGTTTCTTAAGAAATCAAGATAAGTTAGAAAAGAATCTTGAGGTGTTAGATAAGGAGATGAGATGAATGAATAAAGCAAATAGAAGTTTGAAAAACGAAAAGACAACATTACAAACAACAGTGGAGTCACAAGATGAATATATTAAAGGTTTAGAAAGTGGGAAGAAATATTTTCTCGAGCTTGTTAATGATTTGAATACACCAATTAGAAAACATGAAACGCAAATAATAGATTTGGAAGCACACCATCATTCTCTGCATCAAACTGTTGATAACCTACATTTGAAGATGGTCGAGCGCTCTGAAGAGTATGAGATACTGAAAAATTATGCCGATTCCTTACACTATCAACTTACTACATTTCTTAACTCAAGTGAGAGGATACTGCAGGAATATGAGTAATTGAAGAAGGATTACGTGTAAATGAAGGTTGATTATGATCTGCAAATGAGAGATTTCCAGGTGCTAGTGGAGTGTGTAGATCAGACGATTGAATTTCTTAGAATGGTGTCTAGAAGAGTAAATGGTTTTGCAGAATGGGCAGCTGATTTGAGGGTTAATTTTTTCTCAATGCGACCTCATGCAAATGATCTAAATAGATTCTTGAAGATGATATGCAGAGAACTCGGACATTTTGGTCGTTTTCATTAATTGCTATTGATAATGATAGTG

mRNA sequence

ATCCAACATATCCAAGGAAGGAGGTTTGAGTGTCTTTATTTACGAAAATGACTTCTGAAAATGTCATATGGAAGGCTCAATGGATGCCTTTGAAGGTAGTGATATATAGATGTAGAGATTTTCACAGTGTGCCTTTGTTGGGACCATGAGGAGGTGTTAACTATACACCATTGTTAGTTTTGCATCAGTTGTGGCTCAAACAATTTATACCACCAACTTATAATCTACAAGAGTCTGACTTTTCATACGATCCTGAAGATTGTTAAGGAAAAAAACGTCTAGCAATATGCGCATGGAAATCTATGAGGAAGATAAAAGACAAAGGACATTACGAAGGTGTTACTAGTGGATACGAGGAATGACAGGCAAACAGAAGGAAGAATATAATAGTTATCTCAAGGGAGGTAGTTGAAAGGGTAAAAGAGACAAGCTTCAAACAACTAATCAATGGGTAGAGAAGAACATAGAACTAGAAGAGAAAAATCGACTGTTAGAGCATGAGAATGAGAAACTTCGTAAAGAGACACAAGTCAATAGATAGATCATGCGTCCTATTTGCAGAAAGAACTTGAAAAGACCAAGAGTTTCTTAAGAAATCAAGATAAGTTAGAAAAGAATCTTGAGGTGTTAGATAAGGAGATGAGATGAATGAATAAAGCAAATAGAAGTTTGAAAAACGAAAAGACAACATTACAAACAACAGTGGAGTCACAAGATGAATATATTAAAGGTTTAGAAAGTGGGAAGAAATATTTTCTCGAGCTTGTTAATGATTTGAATACACCAATTAGAAAACATGAAACGCAAATAATAGATTTGGAAGCACACCATCATTCTCTGCATCAAACTGTTGATAACCTACATTTGAAGATGGTCGAGCGCTCTGAAGAGTATGAGATACTGAAAAATTATGCCGATTCCTTACACTATCAACTTACTACATTTCTTAACTCAAGTGAGAGGATACTGCAGGAATATGAGTAATTGAAGAAGGATTACGTGTAAATGAAGGTTGATTATGATCTGCAAATGAGAGATTTCCAGGTGCTAGTGGAGTGTGTAGATCAGACGATTGAATTTCTTAGAATGGTGTCTAGAAGAGTAAATGGTTTTGCAGAATGGGCAGCTGATTTGAGGGTTAATTTTTTCTCAATGCGACCTCATGCAAATGATCTAAATAGATTCTTGAAGATGATATGCAGAGAACTCGGACATTTTGGTCGTTTTCATTAATTGCTATTGATAATGATAGTG

Coding sequence (CDS)

ATGAATAAAGCAAATAGAAGTTTGAAAAACGAAAAGACAACATTACAAACAACAGTGGAGTCACAAGATGAATATATTAAAGGTTTAGAAAGTGGGAAGAAATATTTTCTCGAGCTTGTTAATGATTTGAATACACCAATTAGAAAACATGAAACGCAAATAATAGATTTGGAAGCACACCATCATTCTCTGCATCAAACTGTTGATAACCTACATTTGAAGATGGTCGAGCGCTCTGAAGAGTATGAGATACTGAAAAATTATGCCGATTCCTTACACTATCAACTTACTACATTTCTTAACTCAAGTGAGAGGATACTGCAGGAATATGAGTAA

Protein sequence

MNKANRSLKNEKTTLQTTVESQDEYIKGLESGKKYFLELVNDLNTPIRKHETQIIDLEAHHHSLHQTVDNLHLKMVERSEEYEILKNYADSLHYQLTTFLNSSERILQEYE
Homology
[Close]
BLAST of MELO3C029904.jh1 vs. NCBI nr
Match: TYK23632.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 177 bits (449), Expect = 1.94e-52
Identity = 91/111 (81.98%), Postives = 97/111 (87.39%), Query Frame = 0 

Query: 1   MNKANRSLKNEKTTLQTTVESQDEYIKGLESGKKYFLELVNDLNTPIRKHETQIIDLEAH 60
           MNKANR LKNEKTTLQ TV SQDEYIK LE+GK+YFLELVNDLNT I K ETQI+DLEA 
Sbjct: 132 MNKANRRLKNEKTTLQATVGSQDEYIKDLENGKEYFLELVNDLNTSIGKRETQIMDLEAQ 191

Query: 61  HHSLHQTVDNLHLKMVERSEEYEILKNYADSLHYQLTTFLNSSERILQEYE 111
           +HSLHQTVD+LHLKM ERSEEYEILKNY DSLHYQLT   NSS+RI QEYE
Sbjct: 192 NHSLHQTVDSLHLKMAERSEEYEILKNYVDSLHYQLTALQNSSKRITQEYE 242

[Close]
BLAST of MELO3C029904.jh1 vs. NCBI nr
Match: KAA0037780.1 (girdin-like [Cucumis melo var. makuwa] >TYK27303.1 girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 177 bits (448), Expect = 2.46e-52
Identity = 91/111 (81.98%), Postives = 98/111 (88.29%), Query Frame = 0 

Query: 1   MNKANRSLKNEKTTLQTTVESQDEYIKGLESGKKYFLELVNDLNTPIRKHETQIIDLEAH 60
           MNKANRSLKNEKTTLQ TV SQDEYIK LE+GK+YFLELVNDLNT I K ETQI+DLEA 
Sbjct: 139 MNKANRSLKNEKTTLQATVGSQDEYIKDLENGKEYFLELVNDLNTSIVKRETQIMDLEAQ 198

Query: 61  HHSLHQTVDNLHLKMVERSEEYEILKNYADSLHYQLTTFLNSSERILQEYE 111
           +HSL QT+DNLHLKM ERSEEYEILKNYADSLH+QLT   NSS+RI QEYE
Sbjct: 199 NHSLRQTIDNLHLKMAERSEEYEILKNYADSLHFQLTAHQNSSKRITQEYE 249

[Close]
BLAST of MELO3C029904.jh1 vs. NCBI nr
Match: TYK18656.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 177 bits (448), Expect = 9.18e-52
Identity = 91/111 (81.98%), Postives = 97/111 (87.39%), Query Frame = 0 

Query: 1   MNKANRSLKNEKTTLQTTVESQDEYIKGLESGKKYFLELVNDLNTPIRKHETQIIDLEAH 60
           MNKANRSLKNEKTTLQ TV S+DEYIK LE+GK+YFLELVNDLNT I K ETQI+DLEA 
Sbjct: 180 MNKANRSLKNEKTTLQATVGSEDEYIKDLENGKEYFLELVNDLNTSIGKRETQIMDLEAQ 239

Query: 61  HHSLHQTVDNLHLKMVERSEEYEILKNYADSLHYQLTTFLNSSERILQEYE 111
           +HSL QTVDNLHLKM ERSEEYEILKNY DSLHYQLT   NSS+RI QEYE
Sbjct: 240 NHSLRQTVDNLHLKMAERSEEYEILKNYVDSLHYQLTALQNSSKRITQEYE 290

[Close]
BLAST of MELO3C029904.jh1 vs. NCBI nr
Match: KAA0060422.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 170 bits (430), Expect = 1.04e-50
Identity = 89/111 (80.18%), Postives = 95/111 (85.59%), Query Frame = 0 

Query: 1   MNKANRSLKNEKTTLQTTVESQDEYIKGLESGKKYFLELVNDLNTPIRKHETQIIDLEAH 60
           M+KANRSLKNEKTTLQ TV SQDEYIK LE+GK+YFLE VNDLNT I K ETQI+DLEA 
Sbjct: 38  MDKANRSLKNEKTTLQATVGSQDEYIKDLENGKEYFLERVNDLNTSIGKRETQIMDLEAQ 97

Query: 61  HHSLHQTVDNLHLKMVERSEEYEILKNYADSLHYQLTTFLNSSERILQEYE 111
           +HSL QTVD+LHLKM E SEEYEILKNYADSLHYQLT   NSS RI QEYE
Sbjct: 98  NHSLRQTVDSLHLKMAECSEEYEILKNYADSLHYQLTALQNSSRRITQEYE 148

[Close]
BLAST of MELO3C029904.jh1 vs. NCBI nr
Match: XP_016900531.1 (PREDICTED: girdin-like [Cucumis melo])

HSP 1 Score: 170 bits (430), Expect = 5.57e-49
Identity = 88/111 (79.28%), Postives = 96/111 (86.49%), Query Frame = 0 

Query: 1   MNKANRSLKNEKTTLQTTVESQDEYIKGLESGKKYFLELVNDLNTPIRKHETQIIDLEAH 60
           MNKANRSLKNEKTTL+ TV S+DEYIK LESGK+YFLE VNDL+T I   ETQI+DLEAH
Sbjct: 189 MNKANRSLKNEKTTLKATVGSEDEYIKDLESGKEYFLEFVNDLHTSIGIRETQIMDLEAH 248

Query: 61  HHSLHQTVDNLHLKMVERSEEYEILKNYADSLHYQLTTFLNSSERILQEYE 111
           +HSL Q VD+LHLKMVERSEEYEILKNY DSLHYQL  F NSS+RI QEYE
Sbjct: 249 NHSLRQIVDSLHLKMVERSEEYEILKNYPDSLHYQLIAFQNSSKRITQEYE 299

[Close]
BLAST of MELO3C029904.jh1 vs. ExPASy TrEMBL
Match: A0A5D3DJ95 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold4336G00010 PE=4 SV=1)

HSP 1 Score: 177 bits (449), Expect = 9.37e-53
Identity = 91/111 (81.98%), Postives = 97/111 (87.39%), Query Frame = 0 

Query: 1   MNKANRSLKNEKTTLQTTVESQDEYIKGLESGKKYFLELVNDLNTPIRKHETQIIDLEAH 60
           MNKANR LKNEKTTLQ TV SQDEYIK LE+GK+YFLELVNDLNT I K ETQI+DLEA 
Sbjct: 132 MNKANRRLKNEKTTLQATVGSQDEYIKDLENGKEYFLELVNDLNTSIGKRETQIMDLEAQ 191

Query: 61  HHSLHQTVDNLHLKMVERSEEYEILKNYADSLHYQLTTFLNSSERILQEYE 111
           +HSLHQTVD+LHLKM ERSEEYEILKNY DSLHYQLT   NSS+RI QEYE
Sbjct: 192 NHSLHQTVDSLHLKMAERSEEYEILKNYVDSLHYQLTALQNSSKRITQEYE 242

[Close]
BLAST of MELO3C029904.jh1 vs. ExPASy TrEMBL
Match: A0A5D3DUG2 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1784G00160 PE=4 SV=1)

HSP 1 Score: 177 bits (448), Expect = 1.19e-52
Identity = 91/111 (81.98%), Postives = 98/111 (88.29%), Query Frame = 0 

Query: 1   MNKANRSLKNEKTTLQTTVESQDEYIKGLESGKKYFLELVNDLNTPIRKHETQIIDLEAH 60
           MNKANRSLKNEKTTLQ TV SQDEYIK LE+GK+YFLELVNDLNT I K ETQI+DLEA 
Sbjct: 139 MNKANRSLKNEKTTLQATVGSQDEYIKDLENGKEYFLELVNDLNTSIVKRETQIMDLEAQ 198

Query: 61  HHSLHQTVDNLHLKMVERSEEYEILKNYADSLHYQLTTFLNSSERILQEYE 111
           +HSL QT+DNLHLKM ERSEEYEILKNYADSLH+QLT   NSS+RI QEYE
Sbjct: 199 NHSLRQTIDNLHLKMAERSEEYEILKNYADSLHFQLTAHQNSSKRITQEYE 249

[Close]
BLAST of MELO3C029904.jh1 vs. ExPASy TrEMBL
Match: A0A5D3D533 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold390G00200 PE=4 SV=1)

HSP 1 Score: 177 bits (448), Expect = 4.44e-52
Identity = 91/111 (81.98%), Postives = 97/111 (87.39%), Query Frame = 0 

Query: 1   MNKANRSLKNEKTTLQTTVESQDEYIKGLESGKKYFLELVNDLNTPIRKHETQIIDLEAH 60
           MNKANRSLKNEKTTLQ TV S+DEYIK LE+GK+YFLELVNDLNT I K ETQI+DLEA 
Sbjct: 180 MNKANRSLKNEKTTLQATVGSEDEYIKDLENGKEYFLELVNDLNTSIGKRETQIMDLEAQ 239

Query: 61  HHSLHQTVDNLHLKMVERSEEYEILKNYADSLHYQLTTFLNSSERILQEYE 111
           +HSL QTVDNLHLKM ERSEEYEILKNY DSLHYQLT   NSS+RI QEYE
Sbjct: 240 NHSLRQTVDNLHLKMAERSEEYEILKNYVDSLHYQLTALQNSSKRITQEYE 290

[Close]
BLAST of MELO3C029904.jh1 vs. ExPASy TrEMBL
Match: A0A5A7UX37 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G002410 PE=4 SV=1)

HSP 1 Score: 170 bits (430), Expect = 5.03e-51
Identity = 89/111 (80.18%), Postives = 95/111 (85.59%), Query Frame = 0 

Query: 1   MNKANRSLKNEKTTLQTTVESQDEYIKGLESGKKYFLELVNDLNTPIRKHETQIIDLEAH 60
           M+KANRSLKNEKTTLQ TV SQDEYIK LE+GK+YFLE VNDLNT I K ETQI+DLEA 
Sbjct: 38  MDKANRSLKNEKTTLQATVGSQDEYIKDLENGKEYFLERVNDLNTSIGKRETQIMDLEAQ 97

Query: 61  HHSLHQTVDNLHLKMVERSEEYEILKNYADSLHYQLTTFLNSSERILQEYE 111
           +HSL QTVD+LHLKM E SEEYEILKNYADSLHYQLT   NSS RI QEYE
Sbjct: 98  NHSLRQTVDSLHLKMAECSEEYEILKNYADSLHYQLTALQNSSRRITQEYE 148

[Close]
BLAST of MELO3C029904.jh1 vs. ExPASy TrEMBL
Match: A0A1S4DX26 (girdin-like OS=Cucumis melo OX=3656 GN=LOC107990936 PE=4 SV=1)

HSP 1 Score: 170 bits (430), Expect = 2.70e-49
Identity = 88/111 (79.28%), Postives = 96/111 (86.49%), Query Frame = 0 

Query: 1   MNKANRSLKNEKTTLQTTVESQDEYIKGLESGKKYFLELVNDLNTPIRKHETQIIDLEAH 60
           MNKANRSLKNEKTTL+ TV S+DEYIK LESGK+YFLE VNDL+T I   ETQI+DLEAH
Sbjct: 189 MNKANRSLKNEKTTLKATVGSEDEYIKDLESGKEYFLEFVNDLHTSIGIRETQIMDLEAH 248

Query: 61  HHSLHQTVDNLHLKMVERSEEYEILKNYADSLHYQLTTFLNSSERILQEYE 111
           +HSL Q VD+LHLKMVERSEEYEILKNY DSLHYQL  F NSS+RI QEYE
Sbjct: 249 NHSLRQIVDSLHLKMVERSEEYEILKNYPDSLHYQLIAFQNSSKRITQEYE 299

The following BLAST results are available for this feature:
BLAST of MELO3C029904.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK23632.11.94e-5281.98girdin-like [Cucumis melo var. makuwa][more]
KAA0037780.12.46e-5281.98girdin-like [Cucumis melo var. makuwa] >TYK27303.1 girdin-like [Cucumis melo var... [more]
TYK18656.19.18e-5281.98girdin-like [Cucumis melo var. makuwa][more]
KAA0060422.11.04e-5080.18girdin-like [Cucumis melo var. makuwa][more]
XP_016900531.15.57e-4979.28PREDICTED: girdin-like [Cucumis melo][more]
BLAST of MELO3C029904.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C029904.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3DJ959.37e-5381.98Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold4336G00010 P... [more]
A0A5D3DUG21.19e-5281.98Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1784G00160 P... [more]
A0A5D3D5334.44e-5281.98Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold390G00200 PE... [more]
A0A5A7UX375.03e-5180.18Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G002410 PE... [more]
A0A1S4DX262.70e-4979.28girdin-like OS=Cucumis melo OX=3656 GN=LOC107990936 PE=4 SV=1[more]
BLAST of MELO3C029904.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C029904.jh1.t1MELO3C029904.jh1.t1mRNA