MELO3C029897 (gene) Melon (DHL92) v4

Overview


Name	MELO3C029897
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Retrotransposon protein
Location	chr01: 19032252 .. 19033147 (+)
RNA-Seq Expression	MELO3C029897
Synteny	MELO3C029897

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAGTGCATCGTCGTAGAGAAAGAAGTATTCGACGATTGGGTCAAGGTGGATTACTAGTCATTTCAACAATTACTGTAGTATATTTTAAAAAAAGACTAACCATTTATTATTGCACTTGTACAAAGTCATCCGATGGCCAAGAGCCTCTTTAATAAGTCATTTCCCCACTATGATGAACTGTAGTATGTGTTTGGTAAAGATCATGCGATGGGAGCCCAGGCCGAGACTTTTGTAGACGTTGGGTCAAACGATCCTACTGGGCACAAGGCATTTGTCGTTGACGTTGTGCCGGATATAGACTTCTAGATAATGTACAATCAGGGATTGAACACGTCACTTGATGAATTGATGGGAACAAGAACCACTCGAGTAAGTGAGGGTAGGTACGTTTTGAGCGGGTCTAAGCGGAAACGTCGAGGACAGGCCACAGATAGTGGGGAAGTAATTCGCACTGCGATTGAGTACGGAAATGAACAACTTAACCGCATTGCTGAATGACCTGTTCTACAACGTCAAGACGCAAGCCAAACACGCCAAGAGGTCTTCCGATAGTTGGAGACCATCCCTGAGCTAAGATTGATGGATAGGTGTCGCTTAATGCATATACTAATTCGTAACGTGGACGACATGAAAGCTTTCCTTGACGTTTTCGACAATGTGATATACTTGTACTGCAGCATCATTCTTGAAGAAAATTGATGACCAGTTTGTTTGTTGTATTTGTATTAGTTGCTTTTCTGACTTCGACTATATGTTCTTCTTATTACGTGTTTTGTCTTATTACCTCACGAACTTTTCTTTGTGTTCAAGCTTTATGGTCTGTATTTTCATTTCGCTTTCCTATGTAATGGTATCATATTGTTGTACTATCGTATAAATGTACTTTTTTTTTTAA

mRNA sequence

AAAGTGCATCGTCGTAGAGAAAGAAGTATTCGACGATTGGGTCAAGGTGGATTACTAGTCATTTCAACAATTACTGTAGTATATTTTAAAAAAAGACTAACCATTTATTATTGCACTTGTACAAAGTCATCCGATGGCCAAGAGCCTCTTTAATAAGTCATTTCCCCACTATGATGAACTGTAGTATGTGTTTGGTAAAGATCATGCGATGGGAGCCCAGGCCGAGACTTTTGTAGACGTTGGGTCAAACGATCCTACTGGGCACAAGGCATTTGTCGTTGACGTTGTGCCGGATATAGACTTCTAGATAATGTACAATCAGGGATTGAACACGTCACTTGATGAATTGATGGGAACAAGAACCACTCGAGTAAGTGAGGGTAGGTACGTTTTGAGCGGGTCTAAGCGGAAACGTCGAGGACAGGCCACAGATAGTGGGGAAGTAATTCGCACTGCGATTGAGTACGGAAATGAACAACTTAACCGCATTGCTGAATGACCTGTTCTACAACGTCAAGACGCAAGCCAAACACGCCAAGAGGTCTTCCGATAGTTGGAGACCATCCCTGAGCTAAGATTGATGGATAGGTGTCGCTTAATGCATATACTAATTCGTAACGTGGACGACATGAAAGCTTTCCTTGACGTTTTCGACAATGTGATATACTTGTACTGCAGCATCATTCTTGAAGAAAATTGATGACCAGTTTGTTTGTTGTATTTGTATTAGTTGCTTTTCTGACTTCGACTATATGTTCTTCTTATTACGTGTTTTGTCTTATTACCTCACGAACTTTTCTTTGTGTTCAAGCTTTATGGTCTGTATTTTCATTTCGCTTTCCTATGTAATGGTATCATATTGTTGTACTATCGTATAAATGTACTTTTTTTTTTAA

Coding sequence (CDS)

ATGTACAATCAGGGATTGAACACGTCACTTGATGAATTGATGGGAACAAGAACCACTCGAGTAAGTGAGGGTAGGTACGTTTTGAGCGGGTCTAAGCGGAAACGTCGAGGACAGGCCACAGATAGTGGGGAAGTAATTCGCACTGCGATTGAGTACGGAAATGAACAACTTAACCGCATTGCTGAATGA

Protein sequence

MYNQGLNTSLDELMGTRTTRVSEGRYVLSGSKRKRRGQATDSGEVIRTAIEYGNEQLNRIAE

Homology

[Close]

BLAST of MELO3C029897 vs. NCBI nr
Match: KAA0060558.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK02311.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 105.1 bits (261), Expect = 2.1e-19
Identity = 53/62 (85.48%), Postives = 56/62 (90.32%), Query Frame = 0


Query: 1   MYNQGLNTSLDELMGTRTTRVSEGRYVLSGSKRKRRGQATDSGEVIRTAIEYGNEQLNRI 60
           MY+QGLN S DELMGTRT RVSEGRYV SGSKRKR GQATDSG+V+RT IEYGNEQLNRI
Sbjct: 378 MYSQGLNMSPDELMGTRTARVSEGRYVSSGSKRKRGGQATDSGDVLRTTIEYGNEQLNRI 437

Query: 61  AE 63
           AE
Sbjct: 438 AE 439

[Close]

BLAST of MELO3C029897 vs. NCBI nr
Match: KAA0052248.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK01812.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 103.2 bits (256), Expect = 8.2e-19
Identity = 52/62 (83.87%), Postives = 57/62 (91.94%), Query Frame = 0


Query: 1   MYNQGLNTSLDELMGTRTTRVSEGRYVLSGSKRKRRGQATDSGEVIRTAIEYGNEQLNRI 60
           MY+QGLN S DELMGTRT RVS+ RYV SGSKRKRRGQA+DSGEVIRTAIE+GNEQLNRI
Sbjct: 171 MYSQGLNMSPDELMGTRTVRVSKSRYVSSGSKRKRRGQASDSGEVIRTAIEFGNEQLNRI 230

Query: 61  AE 63
           A+
Sbjct: 231 AD 232

[Close]

BLAST of MELO3C029897 vs. NCBI nr
Match: KAA0035413.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK25738.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 99.4 bits (246), Expect = 1.2e-17
Identity = 50/62 (80.65%), Postives = 55/62 (88.71%), Query Frame = 0


Query: 1   MYNQGLNTSLDELMGTRTTRVSEGRYVLSGSKRKRRGQATDSGEVIRTAIEYGNEQLNRI 60
           MY+QGLN S DELMG R  +VSEGRYV SGSKRKR+GQATDSG+V+RTAIEYGNEQLN I
Sbjct: 256 MYSQGLNMSPDELMGIRNAQVSEGRYVSSGSKRKRKGQATDSGDVLRTAIEYGNEQLNCI 315

Query: 61  AE 63
           AE
Sbjct: 316 AE 317

[Close]

BLAST of MELO3C029897 vs. NCBI nr
Match: KAA0050216.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYJ98192.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 98.2 bits (243), Expect = 2.6e-17
Identity = 49/62 (79.03%), Postives = 55/62 (88.71%), Query Frame = 0


Query: 1   MYNQGLNTSLDELMGTRTTRVSEGRYVLSGSKRKRRGQATDSGEVIRTAIEYGNEQLNRI 60
           MY+QGLN S D+LMGTRT RVSE R VLSGSKRKR G ATDSG+++RTAIEYGNEQ+NRI
Sbjct: 81  MYSQGLNMSPDDLMGTRTARVSERRNVLSGSKRKRPGHATDSGDIVRTAIEYGNEQVNRI 140

Query: 61  AE 63
           AE
Sbjct: 141 AE 142

[Close]

BLAST of MELO3C029897 vs. NCBI nr
Match: KAA0048374.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK04074.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 97.4 bits (241), Expect = 4.5e-17
Identity = 48/62 (77.42%), Postives = 54/62 (87.10%), Query Frame = 0


Query: 1   MYNQGLNTSLDELMGTRTTRVSEGRYVLSGSKRKRRGQATDSGEVIRTAIEYGNEQLNRI 60
           MY++GLN S DELMGTRT RVSEGRYV SGSK+KR G   DSG+++RTAIEYGNEQLNRI
Sbjct: 146 MYSRGLNMSPDELMGTRTARVSEGRYVSSGSKQKRGGSTIDSGDILRTAIEYGNEQLNRI 205

Query: 61  AE 63
           AE
Sbjct: 206 AE 207

[Close]

BLAST of MELO3C029897 vs. ExPASy TrEMBL
Match: A0A5D3BRF0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18G001260 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.0e-19
Identity = 53/62 (85.48%), Postives = 56/62 (90.32%), Query Frame = 0


Query: 1   MYNQGLNTSLDELMGTRTTRVSEGRYVLSGSKRKRRGQATDSGEVIRTAIEYGNEQLNRI 60
           MY+QGLN S DELMGTRT RVSEGRYV SGSKRKR GQATDSG+V+RT IEYGNEQLNRI
Sbjct: 378 MYSQGLNMSPDELMGTRTARVSEGRYVSSGSKRKRGGQATDSGDVLRTTIEYGNEQLNRI 437

Query: 61  AE 63
           AE
Sbjct: 438 AE 439

[Close]

BLAST of MELO3C029897 vs. ExPASy TrEMBL
Match: A0A5D3BSM9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G00470 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 4.0e-19
Identity = 52/62 (83.87%), Postives = 57/62 (91.94%), Query Frame = 0


Query: 1   MYNQGLNTSLDELMGTRTTRVSEGRYVLSGSKRKRRGQATDSGEVIRTAIEYGNEQLNRI 60
           MY+QGLN S DELMGTRT RVS+ RYV SGSKRKRRGQA+DSGEVIRTAIE+GNEQLNRI
Sbjct: 171 MYSQGLNMSPDELMGTRTVRVSKSRYVSSGSKRKRRGQASDSGEVIRTAIEFGNEQLNRI 230

Query: 61  AE 63
           A+
Sbjct: 231 AD 232

[Close]

BLAST of MELO3C029897 vs. ExPASy TrEMBL
Match: A0A5A7SXX8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold862G00320 PE=3 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 5.7e-18
Identity = 50/62 (80.65%), Postives = 55/62 (88.71%), Query Frame = 0


Query: 1   MYNQGLNTSLDELMGTRTTRVSEGRYVLSGSKRKRRGQATDSGEVIRTAIEYGNEQLNRI 60
           MY+QGLN S DELMG R  +VSEGRYV SGSKRKR+GQATDSG+V+RTAIEYGNEQLN I
Sbjct: 256 MYSQGLNMSPDELMGIRNAQVSEGRYVSSGSKRKRKGQATDSGDVLRTAIEYGNEQLNCI 315

Query: 61  AE 63
           AE
Sbjct: 316 AE 317

[Close]

BLAST of MELO3C029897 vs. ExPASy TrEMBL
Match: A0A5A7U7R0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold180G00810 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.3e-17
Identity = 49/62 (79.03%), Postives = 55/62 (88.71%), Query Frame = 0


Query: 1   MYNQGLNTSLDELMGTRTTRVSEGRYVLSGSKRKRRGQATDSGEVIRTAIEYGNEQLNRI 60
           MY+QGLN S D+LMGTRT RVSE R VLSGSKRKR G ATDSG+++RTAIEYGNEQ+NRI
Sbjct: 81  MYSQGLNMSPDDLMGTRTARVSERRNVLSGSKRKRPGHATDSGDIVRTAIEYGNEQVNRI 140

Query: 61  AE 63
           AE
Sbjct: 141 AE 142

[Close]

BLAST of MELO3C029897 vs. ExPASy TrEMBL
Match: A0A5A7TZA5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1871G00090 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 2.2e-17
Identity = 48/62 (77.42%), Postives = 54/62 (87.10%), Query Frame = 0


Query: 1   MYNQGLNTSLDELMGTRTTRVSEGRYVLSGSKRKRRGQATDSGEVIRTAIEYGNEQLNRI 60
           MY++GLN S DELMGTRT RVSEGRYV SGSK+KR G   DSG+++RTAIEYGNEQLNRI
Sbjct: 146 MYSRGLNMSPDELMGTRTARVSEGRYVSSGSKQKRGGSTIDSGDILRTAIEYGNEQLNRI 205

Query: 61  AE 63
           AE
Sbjct: 206 AE 207

The following BLAST results are available for this feature:

BLAST of MELO3C029897 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0060558.1	2.1e-19	85.48	retrotransposon protein [Cucumis melo var. makuwa] >TYK02311.1 retrotransposon p...	[more]
KAA0052248.1	8.2e-19	83.87	retrotransposon protein [Cucumis melo var. makuwa] >TYK01812.1 retrotransposon p...	[more]
KAA0035413.1	1.2e-17	80.65	retrotransposon protein [Cucumis melo var. makuwa] >TYK25738.1 retrotransposon p...	[more]
KAA0050216.1	2.6e-17	79.03	retrotransposon protein [Cucumis melo var. makuwa] >TYJ98192.1 retrotransposon p...	[more]
KAA0048374.1	4.5e-17	77.42	retrotransposon protein [Cucumis melo var. makuwa] >TYK04074.1 retrotransposon p...	[more]

BLAST of MELO3C029897 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C029897 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BRF0	1.0e-19	85.48	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BSM9	4.0e-19	83.87	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7SXX8	5.7e-18	80.65	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7U7R0	1.3e-17	79.03	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TZA5	2.2e-17	77.42	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of MELO3C029897 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C029897.1	MELO3C029897.1	mRNA