MELO3C029842 (gene) Melon (DHL92) v4

Overview


Name	MELO3C029842
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	CACTA en-spm transposon protein
Location	chr05: 4649086 .. 4651007 (-)
RNA-Seq Expression	MELO3C029842
Synteny	MELO3C029842

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGGATGACACTTTATGCAGAAATGACGTTGATCCCACAATCGTTGAAAGACCGGTTGTGCGTCATGTCACTGACGACTTCATCGACGATGTGGATGAACACTTGTCACATGCAAGCGATGAGGAATTATAGTGACAAATTAAACCACGTATGCACATATTTATATCTAGTTTATATATTTTGATTCTAGCTATGCGTTTGTATTTGGTTATTGAATGTTTGTTTTTTATATGTCCATAGTCATTATGTCATATCGACGATCAAATTTTATGGAGACGGACGATATGTTCCTCCAGTTTGAGGAGGATTTAGATAACATTGCGGGAGGGTCGTCATCTGTGGGCGACAATACGGGTGAGTCTAAGAATTTTATTCATTTTTAACTTACAAATATTTCATGTAGGGGTTCCTAACTTTATATGTTATTGTCTATTTATTGAGCAGGATCTTCTTCTCAACAAACGACTCCGACTCCTAGGAGACGTGCGCAGTCTCGACTCTTGGAGTTAGAGCGCCACGTTGCAATAAATGGGTGCATTCCGATGACGATCGCCCCTGGAGCGGAGAAGCCTATTTCTCCACACGCCATTCGCTTCAGCCAAGCGATAGGCGTGTGCGTGCGAAAGACATTTCCCGTCCGCTGTCTTAAGTGGGCGGATGTTGGGAGAGAATACATTGAGGTCGTCAAGGGCGACCTCTAGGTAATTAAATGCACTACACATTTATATATGATTTCATTTGAAACATATCTAACTTTAACCAATCTAATGTGTTATGTTTGTAATATGCAGCGATTGTTTGTGATTGATTTCAATGATCAAGCAATGAACAGGTTTGTTGAGCATCAGATGCTCACGACCTTTAAAAAGTTCCGGGCCGACTGTCATAGACATTTCAAAAAGTACAGCGACCCGGAGGAGGCTCGTGCCAACCCACCAAACGCATTGGTTGGACGTGATGAGGATTGGCACTTCCTCTGCGACCATTATATCAGCCGTGCATTCCAGGTAATTTGTCATGATTAATAATGATAACAAGTTTTAATAATGATAACAAGTTTTAATAATGATAACCAGGCTACTCAAAAGGCCTTGGTTGGGGACCCAAGCCGAAGGCTCGCAGAACAGCAAGTGCAAGCAGTTCGTCGACATCTTGTTCGCAGTCCACACAAAAAAGAGATTGAATTACAAGCTAAACTTCATGAAGCTTTGGAACGGATTGAAGTACAAGATAGAAATCACCAAGCATTAGCTTCACAAGTGGAAGCTATGAAAAAGATGATTGAAGACCTAACTCGTGCACAACAGGGACCACCACATGATCCCTAGCTCTGCGGTACGTCATATATGTCTCTATTATTCTTAAGTTTTTGCAATATATGATTATGTATTAAACTTAGTTATTTTTATACCATTTTTAGGACCGAAGGTGTAGAATGACGCGCATACGCACCTCGTTGGGAGATTGGGTCTTATGTTTATGTTTTTTCTATATTGAGAACTATATTTTCTTGTAGTCAACTTATTCGTATTATTAATTTTAATTCTATTTTTTTAATTTGTGTTTGTATATTTATTAATTTATTTTAATTTAATCCAAAATGTCACGAAATTTTTTTGAGCAATCCGAACATTATTGTGAATGTTTGAGCAAAATATTATAAGGAAAAAAGTAAAAATAAAATATTTAAAAAAATATATAAAAAATATTTCCCGACGTTCATTACGTCGGGAAAAAAACGTCGGAAAACAGGTTTTCCCGACGCCGTCGATGCCGACGCATCTCCCGGCGTCGGGAAAGCCTCTCGCGACGCATTTCTCCCGACGTCGTTTTGTACGTCGAGATATCCTTTCCCGACGTACTTTGCATTTTCGCCGACGTATTTGTGCGTCGGGAGTACCCACGTCTCTTGTAGTGCTATAA

mRNA sequence

AGGATGACACTTTATGCAGAAATGACGTTGATCCCACAATCGTTGAAAGACCGGTTGTGCGTCATGTCACTGACGACTTCATCGACGATGTGGATGAACACTTGTCACATGCAAGCGATGAGGAATTATAGTGACAAATTAAACCACTCATTATGTCATATCGACGATCAAATTTTATGGAGACGGACGATATGTTCCTCCAGTTTGAGGAGGATTTAGATAACATTGCGGGAGGGTCGTCATCTGTGGGCGACAATACGGGATCTTCTTCTCAACAAACGACTCCGACTCCTAGGAGACGTGCGCAGTCTCGACTCTTGGAGTTAGAGCGCCACGTTGCAATAAATGGGTGCATTCCGATGACGATCGCCCCTGGAGCGGAGAAGCCTATTTCTCCACACGCCATTCGCTTCAGCCAAGCGATAGGCGTGTGCGTCGGGAAAAAAACGTCGGAAAACAGGTTTTCCCGACGCCGTCGATGCCGACGCATCTCCCGGCGTCGGGAAAGCCTCTCGCGACGCATTTCTCCCGACGTCGTTTTGTACGTCGAGATATCCTTTCCCGACGTACTTTGCATTTTCGCCGACGTATTTGTGCGTCGGGAGTACCCACGTCTCTTGTAGTGCTATAA

Coding sequence (CDS)

ATGTCATATCGACGATCAAATTTTATGGAGACGGACGATATGTTCCTCCAGTTTGAGGAGGATTTAGATAACATTGCGGGAGGGTCGTCATCTGTGGGCGACAATACGGGATCTTCTTCTCAACAAACGACTCCGACTCCTAGGAGACGTGCGCAGTCTCGACTCTTGGAGTTAGAGCGCCACGTTGCAATAAATGGGTGCATTCCGATGACGATCGCCCCTGGAGCGGAGAAGCCTATTTCTCCACACGCCATTCGCTTCAGCCAAGCGATAGGCGTGTGCGTCGGGAAAAAAACGTCGGAAAACAGGTTTTCCCGACGCCGTCGATGCCGACGCATCTCCCGGCGTCGGGAAAGCCTCTCGCGACGCATTTCTCCCGACGTCGTTTTGTACGTCGAGATATCCTTTCCCGACGTACTTTGCATTTTCGCCGACGTATTTGTGCGTCGGGAGTACCCACGTCTCTTGTAG

Protein sequence

MSYRRSNFMETDDMFLQFEEDLDNIAGGSSSVGDNTGSSSQQTTPTPRRRAQSRLLELERHVAINGCIPMTIAPGAEKPISPHAIRFSQAIGVCVGKKTSENRFSRRRRCRRISRRRESLSRRISPDVVLYVEISFPDVLCIFADVFVRREYPRLL

Homology

[Close]

BLAST of MELO3C029842 vs. NCBI nr
Match: TYK14413.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 218.0 bits (554), Expect = 5.7e-53
Identity = 132/190 (69.47%), Postives = 136/190 (71.58%), Query Frame = 0


Query: 9   METDDMFLQFEEDLD-NIAGGSSSVGDNTGSSSQQTTPTPRRRAQSRLLELERHVAINGC 68
           METDDMFLQFE+DLD NIAGGSSSVGDNTGSSSQQTTPTPRRRAQSRLLELERHVAING 
Sbjct: 1   METDDMFLQFEDDLDNNIAGGSSSVGDNTGSSSQQTTPTPRRRAQSRLLELERHVAINGR 60

Query: 69  IPMTIAPGAEKPISPHAIRFSQAIGVCVGK-------------------------KTSEN 128
           IPMTIAPGAEKPISPHA+RFSQAIGVCV K                           S  
Sbjct: 61  IPMTIAPGAEKPISPHAVRFSQAIGVCVRKTFPVRCLKWTDVGREYIEVVKGDLQTASGI 120

Query: 129 RFSRRRRC------------RRISRRRESLSRRIS----PDVVLYVEISFPDVLCIFADV 157
           RFSRRR                + RRRESLSRRIS    PDVVL+V ISFPDVLCIFADV
Sbjct: 121 RFSRRRHADASPGVGKGFPDADLVRRRESLSRRISPDVLPDVVLFVGISFPDVLCIFADV 180

[Close]

BLAST of MELO3C029842 vs. NCBI nr
Match: KAA0046834.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 184.1 bits (466), Expect = 9.2e-43
Identity = 93/97 (95.88%), Postives = 94/97 (96.91%), Query Frame = 0


Query: 1   MSYRRSNFMETDDMFLQFEEDLDNIAGGSSSVGDNTGSSSQQTTPTPRRRAQSRLLELER 60
           MSYRRSNFMETDDMFLQFEEDLDNIAGGSSSVGDNT SSSQQTTPTPRRRAQSRLLELER
Sbjct: 255 MSYRRSNFMETDDMFLQFEEDLDNIAGGSSSVGDNTRSSSQQTTPTPRRRAQSRLLELER 314

Query: 61  HVAINGCIPMTIAPGAEKPISPHAIRFSQAIGVCVGK 98
           HVAING IPMTIAPGAEKPISPHA+RFSQAIGVCV K
Sbjct: 315 HVAINGRIPMTIAPGAEKPISPHAVRFSQAIGVCVRK 351

[Close]

BLAST of MELO3C029842 vs. NCBI nr
Match: TYJ99698.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 180.6 bits (457), Expect = 1.0e-41
Identity = 93/98 (94.90%), Postives = 95/98 (96.94%), Query Frame = 0


Query: 1   MSYRRSNFMETDDMFLQFEEDLDNIAGGSSSVGDNT-GSSSQQTTPTPRRRAQSRLLELE 60
           MSYRRS+FMETDDMFLQFEEDLDNIAGGSSSVGDNT GSSSQQTTPTPRRRAQSRLLELE
Sbjct: 94  MSYRRSSFMETDDMFLQFEEDLDNIAGGSSSVGDNTAGSSSQQTTPTPRRRAQSRLLELE 153

Query: 61  RHVAINGCIPMTIAPGAEKPISPHAIRFSQAIGVCVGK 98
           RHVAING IPMTIAPGAEKPISPHA+RFSQAIGVCV K
Sbjct: 154 RHVAINGRIPMTIAPGAEKPISPHAVRFSQAIGVCVRK 191

[Close]

BLAST of MELO3C029842 vs. NCBI nr
Match: TYJ96549.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 179.1 bits (453), Expect = 2.9e-41
Identity = 93/98 (94.90%), Postives = 94/98 (95.92%), Query Frame = 0


Query: 1   MSYRRSNFMETDDMFLQFEEDLD-NIAGGSSSVGDNTGSSSQQTTPTPRRRAQSRLLELE 60
           MSYRRSNFMETDDMFLQFE+DLD NIAGGSSSVGDNTGSSSQQTTPTPRRRAQSRLLELE
Sbjct: 196 MSYRRSNFMETDDMFLQFEDDLDNNIAGGSSSVGDNTGSSSQQTTPTPRRRAQSRLLELE 255

Query: 61  RHVAINGCIPMTIAPGAEKPISPHAIRFSQAIGVCVGK 98
           RHVAING IPMTIAPGAEKPISPHA RFSQAIGVCV K
Sbjct: 256 RHVAINGRIPMTIAPGAEKPISPHANRFSQAIGVCVRK 293

[Close]

BLAST of MELO3C029842 vs. NCBI nr
Match: TYK11476.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 178.7 bits (452), Expect = 3.8e-41
Identity = 92/98 (93.88%), Postives = 94/98 (95.92%), Query Frame = 0


Query: 1   MSYRRSNFMETDDMFLQFEEDLD-NIAGGSSSVGDNTGSSSQQTTPTPRRRAQSRLLELE 60
           MSYR SNFMETDDMFLQFE+DLD NIAGGSSSVGDNTGSSSQQTTPTPRRRAQSRLLELE
Sbjct: 145 MSYRPSNFMETDDMFLQFEDDLDNNIAGGSSSVGDNTGSSSQQTTPTPRRRAQSRLLELE 204

Query: 61  RHVAINGCIPMTIAPGAEKPISPHAIRFSQAIGVCVGK 98
           RHVAING IPMTIAPGAEKPISPHA+RFSQAIGVCV K
Sbjct: 205 RHVAINGRIPMTIAPGAEKPISPHAVRFSQAIGVCVRK 242

[Close]

BLAST of MELO3C029842 vs. ExPASy TrEMBL
Match: A0A5D3CRC0 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold186G00660 PE=4 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 2.8e-53
Identity = 132/190 (69.47%), Postives = 136/190 (71.58%), Query Frame = 0


Query: 9   METDDMFLQFEEDLD-NIAGGSSSVGDNTGSSSQQTTPTPRRRAQSRLLELERHVAINGC 68
           METDDMFLQFE+DLD NIAGGSSSVGDNTGSSSQQTTPTPRRRAQSRLLELERHVAING 
Sbjct: 1   METDDMFLQFEDDLDNNIAGGSSSVGDNTGSSSQQTTPTPRRRAQSRLLELERHVAINGR 60

Query: 69  IPMTIAPGAEKPISPHAIRFSQAIGVCVGK-------------------------KTSEN 128
           IPMTIAPGAEKPISPHA+RFSQAIGVCV K                           S  
Sbjct: 61  IPMTIAPGAEKPISPHAVRFSQAIGVCVRKTFPVRCLKWTDVGREYIEVVKGDLQTASGI 120

Query: 129 RFSRRRRC------------RRISRRRESLSRRIS----PDVVLYVEISFPDVLCIFADV 157
           RFSRRR                + RRRESLSRRIS    PDVVL+V ISFPDVLCIFADV
Sbjct: 121 RFSRRRHADASPGVGKGFPDADLVRRRESLSRRISPDVLPDVVLFVGISFPDVLCIFADV 180

[Close]

BLAST of MELO3C029842 vs. ExPASy TrEMBL
Match: A0A5A7TUT1 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold216G001310 PE=4 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 4.4e-43
Identity = 93/97 (95.88%), Postives = 94/97 (96.91%), Query Frame = 0


Query: 1   MSYRRSNFMETDDMFLQFEEDLDNIAGGSSSVGDNTGSSSQQTTPTPRRRAQSRLLELER 60
           MSYRRSNFMETDDMFLQFEEDLDNIAGGSSSVGDNT SSSQQTTPTPRRRAQSRLLELER
Sbjct: 255 MSYRRSNFMETDDMFLQFEEDLDNIAGGSSSVGDNTRSSSQQTTPTPRRRAQSRLLELER 314

Query: 61  HVAINGCIPMTIAPGAEKPISPHAIRFSQAIGVCVGK 98
           HVAING IPMTIAPGAEKPISPHA+RFSQAIGVCV K
Sbjct: 315 HVAINGRIPMTIAPGAEKPISPHAVRFSQAIGVCVRK 351

[Close]

BLAST of MELO3C029842 vs. ExPASy TrEMBL
Match: A0A5D3BNG3 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold562G00960 PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 4.9e-42
Identity = 93/98 (94.90%), Postives = 95/98 (96.94%), Query Frame = 0


Query: 1   MSYRRSNFMETDDMFLQFEEDLDNIAGGSSSVGDNT-GSSSQQTTPTPRRRAQSRLLELE 60
           MSYRRS+FMETDDMFLQFEEDLDNIAGGSSSVGDNT GSSSQQTTPTPRRRAQSRLLELE
Sbjct: 94  MSYRRSSFMETDDMFLQFEEDLDNIAGGSSSVGDNTAGSSSQQTTPTPRRRAQSRLLELE 153

Query: 61  RHVAINGCIPMTIAPGAEKPISPHAIRFSQAIGVCVGK 98
           RHVAING IPMTIAPGAEKPISPHA+RFSQAIGVCV K
Sbjct: 154 RHVAINGRIPMTIAPGAEKPISPHAVRFSQAIGVCVRK 191

[Close]

BLAST of MELO3C029842 vs. ExPASy TrEMBL
Match: A0A5D3BBZ9 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold546G002070 PE=4 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 1.4e-41
Identity = 93/98 (94.90%), Postives = 94/98 (95.92%), Query Frame = 0


Query: 1   MSYRRSNFMETDDMFLQFEEDLD-NIAGGSSSVGDNTGSSSQQTTPTPRRRAQSRLLELE 60
           MSYRRSNFMETDDMFLQFE+DLD NIAGGSSSVGDNTGSSSQQTTPTPRRRAQSRLLELE
Sbjct: 196 MSYRRSNFMETDDMFLQFEDDLDNNIAGGSSSVGDNTGSSSQQTTPTPRRRAQSRLLELE 255

Query: 61  RHVAINGCIPMTIAPGAEKPISPHAIRFSQAIGVCVGK 98
           RHVAING IPMTIAPGAEKPISPHA RFSQAIGVCV K
Sbjct: 256 RHVAINGRIPMTIAPGAEKPISPHANRFSQAIGVCVRK 293

[Close]

BLAST of MELO3C029842 vs. ExPASy TrEMBL
Match: A0A5D3CM32 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G001360 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 1.9e-41
Identity = 92/98 (93.88%), Postives = 94/98 (95.92%), Query Frame = 0


Query: 1   MSYRRSNFMETDDMFLQFEEDLD-NIAGGSSSVGDNTGSSSQQTTPTPRRRAQSRLLELE 60
           MSYR SNFMETDDMFLQFE+DLD NIAGGSSSVGDNTGSSSQQTTPTPRRRAQSRLLELE
Sbjct: 145 MSYRPSNFMETDDMFLQFEDDLDNNIAGGSSSVGDNTGSSSQQTTPTPRRRAQSRLLELE 204

Query: 61  RHVAINGCIPMTIAPGAEKPISPHAIRFSQAIGVCVGK 98
           RHVAING IPMTIAPGAEKPISPHA+RFSQAIGVCV K
Sbjct: 205 RHVAINGRIPMTIAPGAEKPISPHAVRFSQAIGVCVRK 242

The following BLAST results are available for this feature:

BLAST of MELO3C029842 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK14413.1	5.7e-53	69.47	CACTA en-spm transposon protein [Cucumis melo var. makuwa]	[more]
KAA0046834.1	9.2e-43	95.88	CACTA en-spm transposon protein [Cucumis melo var. makuwa]	[more]
TYJ99698.1	1.0e-41	94.90	CACTA en-spm transposon protein [Cucumis melo var. makuwa]	[more]
TYJ96549.1	2.9e-41	94.90	CACTA en-spm transposon protein [Cucumis melo var. makuwa]	[more]
TYK11476.1	3.8e-41	93.88	CACTA en-spm transposon protein [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C029842 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C029842 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CRC0	2.8e-53	69.47	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A5A7TUT1	4.4e-43	95.88	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A5D3BNG3	4.9e-42	94.90	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A5D3BBZ9	1.4e-41	94.90	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A5D3CM32	1.9e-41	93.88	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]

BLAST of MELO3C029842 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 26..52
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 28..50

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C029842.1	MELO3C029842.1	mRNA