MELO3C029782 (gene) Melon (DHL92) v4

Overview
NameMELO3C029782
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Locationchr07: 5331179 .. 5331409 (+)
RNA-Seq ExpressionMELO3C029782
SyntenyMELO3C029782
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATCTCAATGAGGCGAGGTGGAACCACACAGGCTGCCCTTTGGTCACGCCTCCTACGCTTACCACTCACCTACGCTCTTGCAGCATGCCCCGGCAAGACTATCATAATAATACGCGAAGCAGCTGAGCGGCTCGACCAAAGAGGAATTTGCGATAGGGAAGGCGTGGTTGAGACTGAGAGAGAAAGTCGATGCGAAGGTTCAGATCTTCTCTCTTCGCGAGACGGCCCATGA

mRNA sequence

ATCTCAATGAGGCGAGGTGGAACCACACAGGCTGCCCTTTGGTCACGCCTCCTACGCTTACCACTCACCTACGCTCTTGCAGCATGCCCCGGCAAGACTATCATAATAATACGCGAAGCAGCTGAGCGGCTCGACCAAAGAGGAATTTGCGATAGGGAAGGCGTGGTTGAGACTGAGAGAGAAAGTCGATGCGAAGGTTCAGATCTTCTCTCTTCGCGAGACGGCCCATGA

Coding sequence (CDS)

ATGAGGCGAGGTGGAACCACACAGGCTGCCCTTTGGTCACGCCTCCTACGCTTACCACTCACCTACGCTCTTGCAGCATGCCCCGGCAAGACTATCATAATAATACGCGAAGCAGCTGAGCGGCTCGACCAAAGAGGAATTTGCGATAGGGAAGGCGTGGTTGAGACTGAGAGAGAAAGTCGATGCGAAGGTTCAGATCTTCTCTCTTCGCGAGACGGCCCATGA

Protein sequence

MRRGGTTQAALWSRLLRLPLTYALAACPGKTIIIIREAAERLDQRGICDREGVVETERESRCEGSDLLSSRDGP
Homology
BLAST of MELO3C029782 vs. NCBI nr
Match: KAA0042227.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 110.9 bits (276), Expect = 4.7e-21
Identity = 55/65 (84.62%), Postives = 59/65 (90.77%), Query Frame = 0

Query: 1  MRRGGTTQAALWSRLLRLPLTYALAACPGKTIIIIREAAERLDQRGICDREGVVETERES 60
          M RGGTTQAALWS LL LPLTYALAACP KTIIIIREAAE LDQRGICD+EGV+ETER+S
Sbjct: 1  MMRGGTTQAALWSCLLHLPLTYALAACPDKTIIIIREAAEWLDQRGICDKEGVIETERKS 60

Query: 61 RCEGS 66
          RCE +
Sbjct: 61 RCEAA 65

BLAST of MELO3C029782 vs. NCBI nr
Match: KAA0064098.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 110.5 bits (275), Expect = 6.1e-21
Identity = 55/65 (84.62%), Postives = 59/65 (90.77%), Query Frame = 0

Query: 1  MRRGGTTQAALWSRLLRLPLTYALAACPGKTIIIIREAAERLDQRGICDREGVVETERES 60
          M RGGTTQAALWS LL LPLTYALAACP KTIIII EAAERLDQRGICD+EGV+ETER+S
Sbjct: 1  MIRGGTTQAALWSCLLHLPLTYALAACPDKTIIIIGEAAERLDQRGICDKEGVIETERKS 60

Query: 61 RCEGS 66
          RCE +
Sbjct: 61 RCEAA 65

BLAST of MELO3C029782 vs. NCBI nr
Match: KAA0056231.1 (hypothetical protein E6C27_scaffold967G00180 [Cucumis melo var. makuwa])

HSP 1 Score: 109.8 bits (273), Expect = 1.0e-20
Identity = 55/65 (84.62%), Postives = 58/65 (89.23%), Query Frame = 0

Query: 1  MRRGGTTQAALWSRLLRLPLTYALAACPGKTIIIIREAAERLDQRGICDREGVVETERES 60
          M RGGTTQAALWS LL LPLTYAL AC  KTIIIIREAAERLDQRGICDREGV+ETER+S
Sbjct: 1  MMRGGTTQAALWSCLLHLPLTYALVACLDKTIIIIREAAERLDQRGICDREGVIETERKS 60

Query: 61 RCEGS 66
          RCE +
Sbjct: 61 RCEAA 65

BLAST of MELO3C029782 vs. NCBI nr
Match: KAG6590352.1 (hypothetical protein SDJN03_15775, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 60.5 bits (145), Expect = 7.2e-06
Identity = 41/76 (53.95%), Postives = 43/76 (56.58%), Query Frame = 0

Query: 6   TTQAALWSRLLRLPLTYALAACPGKTIIIIREAAERL---DQRGIC-----DREGVVETE 65
           T  AALW+RLL LPLT ALAACP  +              D   I      D EGVVET 
Sbjct: 100 TAAAALWARLLGLPLTSALAACPLPSPSFGEYGFHNTGSSDSYSIAMLYSFDSEGVVETL 159

Query: 66  RESRCEGSDLLSSRDG 74
           RESRCEGSD  SSRDG
Sbjct: 160 RESRCEGSDRRSSRDG 175

BLAST of MELO3C029782 vs. NCBI nr
Match: KAG6585891.1 (hypothetical protein SDJN03_18624, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 59.3 bits (142), Expect = 1.6e-05
Identity = 39/74 (52.70%), Postives = 45/74 (60.81%), Query Frame = 0

Query: 9   AALWSRLLRLPLTYALAACP------GKTIIIIREAAERLDQRGI--CDREGVVETERES 68
           AALW+RLL LPLT ALAACP      G+       +++      +   D EGVVET RES
Sbjct: 81  AALWARLLGLPLTSALAACPLPSPSFGEYSFHNTRSSDSYSIAMLYSFDNEGVVETLRES 140

Query: 69  RCEGSDLLSSRDGP 75
           RCEGSD  SS DGP
Sbjct: 141 RCEGSDRRSSGDGP 154

BLAST of MELO3C029782 vs. ExPASy TrEMBL
Match: A0A5A7TKL6 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold129G00170 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 2.3e-21
Identity = 55/65 (84.62%), Postives = 59/65 (90.77%), Query Frame = 0

Query: 1  MRRGGTTQAALWSRLLRLPLTYALAACPGKTIIIIREAAERLDQRGICDREGVVETERES 60
          M RGGTTQAALWS LL LPLTYALAACP KTIIIIREAAE LDQRGICD+EGV+ETER+S
Sbjct: 1  MMRGGTTQAALWSCLLHLPLTYALAACPDKTIIIIREAAEWLDQRGICDKEGVIETERKS 60

Query: 61 RCEGS 66
          RCE +
Sbjct: 61 RCEAA 65

BLAST of MELO3C029782 vs. ExPASy TrEMBL
Match: A0A5A7V903 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2613G00020 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 3.0e-21
Identity = 55/65 (84.62%), Postives = 59/65 (90.77%), Query Frame = 0

Query: 1  MRRGGTTQAALWSRLLRLPLTYALAACPGKTIIIIREAAERLDQRGICDREGVVETERES 60
          M RGGTTQAALWS LL LPLTYALAACP KTIIII EAAERLDQRGICD+EGV+ETER+S
Sbjct: 1  MIRGGTTQAALWSCLLHLPLTYALAACPDKTIIIIGEAAERLDQRGICDKEGVIETERKS 60

Query: 61 RCEGS 66
          RCE +
Sbjct: 61 RCEAA 65

BLAST of MELO3C029782 vs. ExPASy TrEMBL
Match: A0A5A7URS5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold967G00180 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 5.0e-21
Identity = 55/65 (84.62%), Postives = 58/65 (89.23%), Query Frame = 0

Query: 1  MRRGGTTQAALWSRLLRLPLTYALAACPGKTIIIIREAAERLDQRGICDREGVVETERES 60
          M RGGTTQAALWS LL LPLTYAL AC  KTIIIIREAAERLDQRGICDREGV+ETER+S
Sbjct: 1  MMRGGTTQAALWSCLLHLPLTYALVACLDKTIIIIREAAERLDQRGICDREGVIETERKS 60

Query: 61 RCEGS 66
          RCE +
Sbjct: 61 RCEAA 65

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0042227.14.7e-2184.62Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... [more]
KAA0064098.16.1e-2184.62Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... [more]
KAA0056231.11.0e-2084.62hypothetical protein E6C27_scaffold967G00180 [Cucumis melo var. makuwa][more]
KAG6590352.17.2e-0653.95hypothetical protein SDJN03_15775, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6585891.11.6e-0552.70hypothetical protein SDJN03_18624, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7TKL62.3e-2184.62Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
A0A5A7V9033.0e-2184.62Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
A0A5A7URS55.0e-2184.62Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C029782.1MELO3C029782.1mRNA