MELO3C029750 (gene) Melon (DHL92) v4

Overview
NameMELO3C029750
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
Descriptioncysteine-rich and transmembrane domain-containing protein B-like
Locationchr02: 24738076 .. 24739885 (-)
RNA-Seq ExpressionMELO3C029750
SyntenyMELO3C029750
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACATTGCTCCTACATTTGACTTCATGGATATTGTTCCCCTTGAAGCAGTTGGGCGGTATTAAGAATGTATCTTGTTGTTATGCAGTTGGATTTACAAATTTGGTGGTCTTGCTGTGATGAAGCAGGTTACCTAAATTTCAAGAGAACTACTCATTTTCTTTCCTCACAAACAACTGCTAACATTGTATCTTTCTGTCAGTAGGTGTAGAAATTTACAAAGACAAGCAACTACTCCACAATCCATCCTTTTTTTTTTTTATATGCAAAGTGAACAACTTGAATCCTCACTCTGTTTTATATCTTGCCCTAATTCAATGCACATTCAACCTCCAGCCAATCAAAGTCAAAGAGTTCATAAACATGAAACAAAATTTTCAGAACCAACCTCAAGGTCATCTTTTTATCTTCTTCTATCAATAATTGTTCTTTAGTTGTAGCTACTTTTGCAAGAGATGATGTTGAAATAGGAAGGAAAATCCATTAAAGTAAAGAACTATCTGTGCCAGATGATTTGATTTCCATATAAAGTAATTAGTAACTTTTCAAAATTTTCATCTCTAGTTTTTCTTGTTCTCTGTAGTTTCTTTTGAAGGGAAAACAAAAGGAAAAAAAAAAAAAAGATTATAAATTATTGTCGGAAAGTATGTTCTGAATTTTTTGTCTGTAGCATAATTTTATAGATACTGGACCAGGTCCTTACCAAGTTGGCCCACCTAAGTGTGATCCAATGCAACATGGTCAGACTCAGCCATACCCTCCAATTGTACCTCCTCAAGGGGAAACTAAATCTAAAACTGTACCTCCTTCAATGAAAACTAAGTTTAGAGGTGATGGGTTTTGCAGAGGATTGTAAGTTCCCTCTCCCTTTCTCCCCTACCCCCCCCCCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAATTTATGCTATGGTTTGAATTTTTCTCTGTTGTGAATAGTTGTGCTGGCTTGTGTTGCTACTGCTGCCTAGATATCTGCTTCTAGGGATGGAGGGACCTTGGGAACGGCACTATGCCTCTGCACTGATAGTTTCTCTGACACAAGTTATCTTCTAGGTTCCCATAAACATGCAGTATGTTTCTCTGTAAACTACAGTTACCATCTGATTTCAGGTTCTGTATGTGAAATTTTCTATTCCCTATGTTGTTTTGTATAATATCCTAGTCAGAGTAAGAGAGATGAACTAATCCTAAAGAAGATCACAGGTTTTTTTAATCAGAAGTAGCTAGTTCCACAATACTGAATAAAATTTCACCTAGTAAGAGTTCAGTTCTTGGAGTAAACAGTTGAGAATTTAACTCTTCCTTATGACACTATTTTCTCATACATTTCTCTAAGAATTTCACTCTAAGTTAACAAATAGTTTCTACCATCTTTTCTTCAACGCTCTTCGACTAGCTAATTCTTAACAAAAGAGACGGGCTTTGCCATGTACTTGGGATGATCATCCCCAGCCATGATTACAGTTATACTTGGAGTAGTATCAAACTGCTCGCTTCCTTTGTGTTTGCTTGCTTTCTCTTTGTCGTTGTTGATAGAATTTCGCATCCATATTTGGTGAGAGCAAGCAAGGATAAAAAGAATAGCAGAAGTGATTCCGAAAACAACAGCAAGGCCTCCAAAGATATATGGGATGGGAGAGTTCCATTGCAAGAACTCTTTCCATATAACTGTCATCTCTCCCTTGCTTTGTTCTTAAGAAACGGAATTCACCTCAATTTATACCTAAGTATCCAACTAAGCAATAAATTGATACCGATGCTAGAAGATAAGAATCCTAAACATTGA

mRNA sequence

ATGAACATTGCTCCTACATTTGACTTCATGGATATTGTTCCCCTTGAAGCAGTTGGGCGTTGGATTTACAAATTTGGTGGTCTTGCTGTGATGAAGCAGCATAATTTTATAGATACTGGACCAGGTCCTTACCAAGTTGGCCCACCTAAGTGTGATCCAATGCAACATGGTCAGACTCAGCCATACCCTCCAATTGTACCTCCTCAAGGGGAAACTAAATCTAAAACTGTACCTCCTTCAATGAAAACTAAGTTTAGAGGTGATGGGTTTTGCAGAGGATTAATTTCGCATCCATATTTGGTGAGAGCAAGCAAGGATAAAAAGAATAGCAGAAGTGATTCCGAAAACAACAGCAAGGCCTCCAAAGATATATGGGATGGGAGAGTTCCATTGCAAGAACTCTTTCCATATAACTGTCATCTCTCCCTTGCTTTGTTCTTAAGAAACGGAATTCACCTCAATTTATACCTAAGTATCCAACTAAGCAATAAATTGATACCGATGCTAGAAGATAAGAATCCTAAACATTGA

Coding sequence (CDS)

ATGAACATTGCTCCTACATTTGACTTCATGGATATTGTTCCCCTTGAAGCAGTTGGGCGTTGGATTTACAAATTTGGTGGTCTTGCTGTGATGAAGCAGCATAATTTTATAGATACTGGACCAGGTCCTTACCAAGTTGGCCCACCTAAGTGTGATCCAATGCAACATGGTCAGACTCAGCCATACCCTCCAATTGTACCTCCTCAAGGGGAAACTAAATCTAAAACTGTACCTCCTTCAATGAAAACTAAGTTTAGAGGTGATGGGTTTTGCAGAGGATTAATTTCGCATCCATATTTGGTGAGAGCAAGCAAGGATAAAAAGAATAGCAGAAGTGATTCCGAAAACAACAGCAAGGCCTCCAAAGATATATGGGATGGGAGAGTTCCATTGCAAGAACTCTTTCCATATAACTGTCATCTCTCCCTTGCTTTGTTCTTAAGAAACGGAATTCACCTCAATTTATACCTAAGTATCCAACTAAGCAATAAATTGATACCGATGCTAGAAGATAAGAATCCTAAACATTGA

Protein sequence

MNIAPTFDFMDIVPLEAVGRWIYKFGGLAVMKQHNFIDTGPGPYQVGPPKCDPMQHGQTQPYPPIVPPQGETKSKTVPPSMKTKFRGDGFCRGLISHPYLVRASKDKKNSRSDSENNSKASKDIWDGRVPLQELFPYNCHLSLALFLRNGIHLNLYLSIQLSNKLIPMLEDKNPKH
Homology
[Close]
BLAST of MELO3C029750 vs. NCBI nr
Match: KAE8652444.1 (hypothetical protein Csa_013973 [Cucumis sativus])

HSP 1 Score: 184.1 bits (466), Expect = 1.0e-42
Identity = 86/104 (82.69%), Postives = 89/104 (85.58%), Query Frame = 0 

Query: 1   MNIAPTFDFMDIVPLEAVGR----------WIYKFGGLAVMKQHNFIDTGPGPYQVGPPK 60
           + IAP FDFMDI+PLEAVGR          WIY FGGLAVMKQHNFIDTGPGPYQV PP 
Sbjct: 22  IKIAPPFDFMDIIPLEAVGRYKECILLLCSWIYNFGGLAVMKQHNFIDTGPGPYQVAPPM 81

Query: 61  CDPMQHGQTQPYPPIVPPQGETKSKTVPPSMKTKFRGDGFCRGL 95
           CDPMQHGQTQPYPPIVPPQGETKS+TVPPSMKTKFRGDGFCRGL
Sbjct: 82  CDPMQHGQTQPYPPIVPPQGETKSETVPPSMKTKFRGDGFCRGL 125

[Close]
BLAST of MELO3C029750 vs. NCBI nr
Match: KAA0058026.1 (hypothetical protein E6C27_scaffold274G003310 [Cucumis melo var. makuwa])

HSP 1 Score: 127.5 bits (319), Expect = 1.1e-25
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0 

Query: 38 DTGPGPYQVGPPKCDPMQHGQTQPYPPIVPPQGETKSKTVPPSMKTKFRGDGFCRGL 95
          DTGPGPYQVGPPKCDPMQHGQTQPYPPIVPPQGETKSKTVPPSMKTKFRGDGFCRGL
Sbjct: 21 DTGPGPYQVGPPKCDPMQHGQTQPYPPIVPPQGETKSKTVPPSMKTKFRGDGFCRGL 77

[Close]
BLAST of MELO3C029750 vs. NCBI nr
Match: XP_022969088.1 (cysteine-rich and transmembrane domain-containing protein B-like [Cucurbita maxima])

HSP 1 Score: 94.4 bits (233), Expect = 1.1e-15
Identity = 42/62 (67.74%), Postives = 48/62 (77.42%), Query Frame = 0 

Query: 33 QHNFIDTGPGPYQVGPPKCDPMQHGQTQPYPPIVPPQGETKSKTVPPSMKTKFRGDGFCR 92
          Q+   DTGPGPY V PP CDPMQHGQ+QPY  I+PPQGETKS+ V P  +T  +GDGFCR
Sbjct: 6  QNQTQDTGPGPYPVAPPMCDPMQHGQSQPYSSIIPPQGETKSQIVTPPRETMSKGDGFCR 65

Query: 93 GL 95
          GL
Sbjct: 66 GL 67

[Close]
BLAST of MELO3C029750 vs. NCBI nr
Match: KAG7021578.1 (hypothetical protein SDJN02_15304 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 93.6 bits (231), Expect = 1.8e-15
Identity = 41/63 (65.08%), Postives = 48/63 (76.19%), Query Frame = 0 

Query: 33 QHNFIDTGPGPYQVGPPKCDPMQHGQTQPYPPIVPPQGETKSKTVPPSMKTKFRGDGFCR 92
          Q+   DTGPGPY V PP CDPMQHGQ+QPY  I+PPQGETK + V P  +T  +GDGFCR
Sbjct: 6  QNQTQDTGPGPYPVAPPMCDPMQHGQSQPYSSIIPPQGETKFQNVAPPRETMSKGDGFCR 65

Query: 93 GLI 96
          GL+
Sbjct: 66 GLL 68

[Close]
BLAST of MELO3C029750 vs. NCBI nr
Match: KAG6587617.1 (hypothetical protein SDJN03_16182, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 70.5 bits (171), Expect = 1.7e-08
Identity = 30/45 (66.67%), Postives = 36/45 (80.00%), Query Frame = 0 

Query: 51 CDPMQHGQTQPYPPIVPPQGETKSKTVPPSMKTKFRGDGFCRGLI 96
          CDPMQHGQ+QPY  I+PPQGETK + V P  +T  +GDGFCRGL+
Sbjct: 2  CDPMQHGQSQPYSSIIPPQGETKFQNVAPPRETMSKGDGFCRGLL 46

[Close]
BLAST of MELO3C029750 vs. ExPASy TrEMBL
Match: A0A0A0LPD8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G014520 PE=4 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 5.0e-43
Identity = 86/104 (82.69%), Postives = 89/104 (85.58%), Query Frame = 0 

Query: 1   MNIAPTFDFMDIVPLEAVGR----------WIYKFGGLAVMKQHNFIDTGPGPYQVGPPK 60
           + IAP FDFMDI+PLEAVGR          WIY FGGLAVMKQHNFIDTGPGPYQV PP 
Sbjct: 20  IKIAPPFDFMDIIPLEAVGRYKECILLLCSWIYNFGGLAVMKQHNFIDTGPGPYQVAPPM 79

Query: 61  CDPMQHGQTQPYPPIVPPQGETKSKTVPPSMKTKFRGDGFCRGL 95
           CDPMQHGQTQPYPPIVPPQGETKS+TVPPSMKTKFRGDGFCRGL
Sbjct: 80  CDPMQHGQTQPYPPIVPPQGETKSETVPPSMKTKFRGDGFCRGL 123

[Close]
BLAST of MELO3C029750 vs. ExPASy TrEMBL
Match: A0A5A7UV38 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G003310 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 5.6e-26
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0 

Query: 38 DTGPGPYQVGPPKCDPMQHGQTQPYPPIVPPQGETKSKTVPPSMKTKFRGDGFCRGL 95
          DTGPGPYQVGPPKCDPMQHGQTQPYPPIVPPQGETKSKTVPPSMKTKFRGDGFCRGL
Sbjct: 21 DTGPGPYQVGPPKCDPMQHGQTQPYPPIVPPQGETKSKTVPPSMKTKFRGDGFCRGL 77

[Close]
BLAST of MELO3C029750 vs. ExPASy TrEMBL
Match: A0A6J1HZZ2 (cysteine-rich and transmembrane domain-containing protein B-like OS=Cucurbita maxima OX=3661 GN=LOC111468187 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 5.2e-16
Identity = 42/62 (67.74%), Postives = 48/62 (77.42%), Query Frame = 0 

Query: 33 QHNFIDTGPGPYQVGPPKCDPMQHGQTQPYPPIVPPQGETKSKTVPPSMKTKFRGDGFCR 92
          Q+   DTGPGPY V PP CDPMQHGQ+QPY  I+PPQGETKS+ V P  +T  +GDGFCR
Sbjct: 6  QNQTQDTGPGPYPVAPPMCDPMQHGQSQPYSSIIPPQGETKSQIVTPPRETMSKGDGFCR 65

Query: 93 GL 95
          GL
Sbjct: 66 GL 67

The following BLAST results are available for this feature:
BLAST of MELO3C029750 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8652444.11.0e-4282.69hypothetical protein Csa_013973 [Cucumis sativus][more]
KAA0058026.11.1e-25100.00hypothetical protein E6C27_scaffold274G003310 [Cucumis melo var. makuwa][more]
XP_022969088.11.1e-1567.74cysteine-rich and transmembrane domain-containing protein B-like [Cucurbita maxi... [more]
KAG7021578.11.8e-1565.08hypothetical protein SDJN02_15304 [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG6587617.11.7e-0866.67hypothetical protein SDJN03_16182, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of MELO3C029750 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C029750 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LPD85.0e-4382.69Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G014520 PE=4 SV=1[more]
A0A5A7UV385.6e-26100.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A6J1HZZ25.2e-1667.74cysteine-rich and transmembrane domain-containing protein B-like OS=Cucurbita ma... [more]
BLAST of MELO3C029750 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C029750.1MELO3C029750.1mRNA