MELO3C029646 (gene) Melon (DHL92) v4

Overview
NameMELO3C029646
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionRetrotransposon protein
Locationchr02: 16634967 .. 16635731 (-)
RNA-Seq ExpressionMELO3C029646
SyntenyMELO3C029646
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAGAAGCAGTACATTGCCATAGCAGAGATGATGGGGCCAGCTTGTAGTGGGTTTGGCTGGAATGAGGAACGAAAGTGCATTGAGGCAGAGAAATCCGTGTTTGATGATTGGGTTAAAGTAAGAAGATGAATATAATTCATACTTTCTATAAAAGTAAAATATAATATACTTACATATGTTAACTCCATGTAGGGACACCCCAATGCTCGATGCCTACTAAATAAACCATTTCCTTACTTTTATGATTTGGAAGTTGTGTTTGGTAGAGATAGGGCTACTGGTGGTAGATGTAAGACACCTGTTGAAATGGGCTCATAGACTGCAAGAGATATTGAGGAAGATGACATGGACATTAATCTTGAAGACTTTGATATTCCAAATCCACATGGACTCGAGCCACCTTCGGGGGAGGACATGCCATCCACTCCAACAAGTATGGCACATGATGCGGGATCATCTAGGCCAAGTAAGAAAAGACGGTCATATTCAGGGGACCTCATGGACACATTTCGTGCAAGTATGCGAGAAACTTCCAAGGAAATTGGAAAGATTGCTGCATGGCAGAGAGAAAAAATGGAAATAGAATCATCCCTACACAAACGATTATATGTTGATTTACAGACTATTCCTGGAATGGACGTGGATGATTGTTTAATTGTAGCCGAGTCTCTATTACCTGATCCCACGATGTTGCACGCATTCCTTGACTACCCAGCAGAATGGAAGTATAGAAAATGCATGCGTATCTTAGGAAGGCAACCATAA

mRNA sequence

AAGAAGCAGTACATTGCCATAGCAGAGATGATGGGGCCAGCTTGTAGTGGGTTTGGCTGGAATGAGGAACGAAAGTGCATTGAGGCAGAGAAATCCGTGTTTGATGATTGGGTTAAAACTGCAAGAGATATTGAGGAAGATGACATGGACATTAATCTTGAAGACTTTGATATTCCAAATCCACATGGACTCGAGCCACCTTCGGGGGAGGACATGCCATCCACTCCAACAAGTATGGCACATGATGCGGGATCATCTAGGCCAAGTAAGAAAAGACGGTCATATTCAGGGGACCTCATGGACACATTTCGTGCAAGTATGCGAGAAACTTCCAAGGAAATTGGAAAGATTGCTGCATGGCAGAGAGAAAAAATGGAAATAGAATCATCCCTACACAAACGATTATATGTTGATTTACAGACTATTCCTGGAATGGACGTGGATGATTGTTTAATTGTAGCCGAGTCTCTATTACCTGATCCCACGATGTTGCACGCATTCCTTGACTACCCAGCAGAATGGAAGTATAGAAAATGCATGCGTATCTTAGGAAGGCAACCATAA

Coding sequence (CDS)

ATGATGGGGCCAGCTTGTAGTGGGTTTGGCTGGAATGAGGAACGAAAGTGCATTGAGGCAGAGAAATCCGTGTTTGATGATTGGGTTAAAACTGCAAGAGATATTGAGGAAGATGACATGGACATTAATCTTGAAGACTTTGATATTCCAAATCCACATGGACTCGAGCCACCTTCGGGGGAGGACATGCCATCCACTCCAACAAGTATGGCACATGATGCGGGATCATCTAGGCCAAGTAAGAAAAGACGGTCATATTCAGGGGACCTCATGGACACATTTCGTGCAAGTATGCGAGAAACTTCCAAGGAAATTGGAAAGATTGCTGCATGGCAGAGAGAAAAAATGGAAATAGAATCATCCCTACACAAACGATTATATGTTGATTTACAGACTATTCCTGGAATGGACGTGGATGATTGTTTAATTGTAGCCGAGTCTCTATTACCTGATCCCACGATGTTGCACGCATTCCTTGACTACCCAGCAGAATGGAAGTATAGAAAATGCATGCGTATCTTAGGAAGGCAACCATAA

Protein sequence

MMGPACSGFGWNEERKCIEAEKSVFDDWVKTARDIEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPTSMAHDAGSSRPSKKRRSYSGDLMDTFRASMRETSKEIGKIAAWQREKMEIESSLHKRLYVDLQTIPGMDVDDCLIVAESLLPDPTMLHAFLDYPAEWKYRKCMRILGRQP
Homology
BLAST of MELO3C029646 vs. NCBI nr
Match: KAA0050106.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 368.2 bits (944), Expect = 3.9e-98
Identity = 178/178 (100.00%), Postives = 178/178 (100.00%), Query Frame = 0

Query: 1   MMGPACSGFGWNEERKCIEAEKSVFDDWVKTARDIEEDDMDINLEDFDIPNPHGLEPPSG 60
           MMGPACSGFGWNEERKCIEAEKSVFDDWVKTARDIEEDDMDINLEDFDIPNPHGLEPPSG
Sbjct: 84  MMGPACSGFGWNEERKCIEAEKSVFDDWVKTARDIEEDDMDINLEDFDIPNPHGLEPPSG 143

Query: 61  EDMPSTPTSMAHDAGSSRPSKKRRSYSGDLMDTFRASMRETSKEIGKIAAWQREKMEIES 120
           EDMPSTPTSMAHDAGSSRPSKKRRSYSGDLMDTFRASMRETSKEIGKIAAWQREKMEIES
Sbjct: 144 EDMPSTPTSMAHDAGSSRPSKKRRSYSGDLMDTFRASMRETSKEIGKIAAWQREKMEIES 203

Query: 121 SLHKRLYVDLQTIPGMDVDDCLIVAESLLPDPTMLHAFLDYPAEWKYRKCMRILGRQP 179
           SLHKRLYVDLQTIPGMDVDDCLIVAESLLPDPTMLHAFLDYPAEWKYRKCMRILGRQP
Sbjct: 204 SLHKRLYVDLQTIPGMDVDDCLIVAESLLPDPTMLHAFLDYPAEWKYRKCMRILGRQP 261

BLAST of MELO3C029646 vs. NCBI nr
Match: KAA0065306.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 317.8 bits (813), Expect = 6.1e-83
Identity = 158/179 (88.27%), Postives = 162/179 (90.50%), Query Frame = 0

Query: 1   MMGPACSGFGWNEERKCIEAE-KSVFDDWVKTARDIEEDDMDINLEDFDIPNPHGLEPPS 60
           MMGPACS FGWNEERK      K+  +   +TARD EEDDMDINLEDFDIPNPHGLEPPS
Sbjct: 369 MMGPACSEFGWNEERKATGGRCKTPVEIGSQTARDTEEDDMDINLEDFDIPNPHGLEPPS 428

Query: 61  GEDMPSTPTSMAHDAGSSRPSKKRRSYSGDLMDTFRASMRETSKEIGKIAAWQREKMEIE 120
           GEDMPSTPTSMAHDAG  RPSKKRR YSGDLMDTFRASMRETSKEIGKIAAWQREKMEIE
Sbjct: 429 GEDMPSTPTSMAHDAGLCRPSKKRRPYSGDLMDTFRASMRETSKEIGKIAAWQREKMEIE 488

Query: 121 SSLHKRLYVDLQTIPGMDVDDCLIVAESLLPDPTMLHAFLDYPAEWKYRKCMRILGRQP 179
           SSLHKRLY +LQTIPGMDVDDCLIVAESLLPDPTMLHAFLDYPAEWKYRKCMRILGRQP
Sbjct: 489 SSLHKRLYTELQTIPGMDVDDCLIVAESLLPDPTMLHAFLDYPAEWKYRKCMRILGRQP 547

BLAST of MELO3C029646 vs. NCBI nr
Match: TYK07921.1 (hypothetical protein E5676_scaffold265G00330 [Cucumis melo var. makuwa])

HSP 1 Score: 295.8 bits (756), Expect = 2.5e-76
Identity = 153/204 (75.00%), Postives = 155/204 (75.98%), Query Frame = 0

Query: 1   MMGPACSGFGWNEERKCIEAEKSVFDDWVK------------------------------ 60
           MMGPACSGFGWNE +KCIE EK VFDDWVK                              
Sbjct: 192 MMGPACSGFGWNEGQKCIEVEKPVFDDWVKGHPNAQGLLNKPFPYFYDLEVVFGRDRATG 251

Query: 61  ------------TARDIEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPTSMAHDAGSSR 120
                       TARD EEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPTSM HDAGSSR
Sbjct: 252 GRCKTPVEMSSQTARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPTSMTHDAGSSR 311

Query: 121 PSKKRRSYSGDLMDTFRASMRETSKEIGKIAAWQREKMEIESSLHKRLYVDLQTIPGMDV 163
           PSKKRRSYSGDLMDTFRASMRETSKEIGKIA WQREKMEIESSLHKRLY +LQTIPGMDV
Sbjct: 312 PSKKRRSYSGDLMDTFRASMRETSKEIGKIATWQREKMEIESSLHKRLYAELQTIPGMDV 371

BLAST of MELO3C029646 vs. NCBI nr
Match: KAA0067273.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 282.0 bits (720), Expect = 3.7e-72
Identity = 147/205 (71.71%), Postives = 152/205 (74.15%), Query Frame = 0

Query: 1   MMGPACSGFGWNEERKCIEAEKSVFDDWVK------------------------------ 60
           MMGPACS FGWNEE+KCIEA+KSVFDDWVK                              
Sbjct: 1   MMGPACSRFGWNEEQKCIEAQKSVFDDWVKGHPNARGLLNKSFPYFYDLKIMFGRDRATG 60

Query: 61  ------------TARDIEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPTSMAHDAGSSR 120
                        ARD EEDDMDINLEDFDIPNPHGLEPPSGEDM STPTSMAHD GSS+
Sbjct: 61  GRCKTPIEMGLQIARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMSSTPTSMAHDVGSSK 120

Query: 121 PSKKRRSYSGDLMDTFRASMRETSKEIGKIAAWQREKMEIESSLHKRLYVDLQTIPGMDV 164
           PSKKRRSYS DLMDTFRASMRETSKEI KIAAWQREKMEIESS+HKRLY +LQTIPGMDV
Sbjct: 121 PSKKRRSYSEDLMDTFRASMRETSKEIRKIAAWQREKMEIESSIHKRLYAELQTIPGMDV 180

BLAST of MELO3C029646 vs. NCBI nr
Match: XP_008460440.1 (PREDICTED: uncharacterized protein LOC103499248 [Cucumis melo])

HSP 1 Score: 279.6 bits (714), Expect = 1.8e-71
Identity = 146/204 (71.57%), Postives = 151/204 (74.02%), Query Frame = 0

Query: 2   MGPACSGFGWNEERKCIEAEKSVFDDWVK------------------------------- 61
           MGPACS FGWNEE+KCIEA+KSVFDDWVK                               
Sbjct: 1   MGPACSRFGWNEEQKCIEAQKSVFDDWVKGHPNARGLLNKSFPYFYDLKIMFGRDRATGG 60

Query: 62  -----------TARDIEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPTSMAHDAGSSRP 121
                       ARD EEDDMDINLEDFDIPNPHGLEPPSGEDM STPTSMAHD GSS+P
Sbjct: 61  RCKTPIEMGLQIARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMSSTPTSMAHDVGSSKP 120

Query: 122 SKKRRSYSGDLMDTFRASMRETSKEIGKIAAWQREKMEIESSLHKRLYVDLQTIPGMDVD 164
           SKKRRSYS DLMDTFRASMRETSKEI KIAAWQREKMEIESS+HKRLY +LQTIPGMDVD
Sbjct: 121 SKKRRSYSEDLMDTFRASMRETSKEIRKIAAWQREKMEIESSIHKRLYAELQTIPGMDVD 180

BLAST of MELO3C029646 vs. ExPASy TrEMBL
Match: A0A5A7U7F7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G001200 PE=4 SV=1)

HSP 1 Score: 368.2 bits (944), Expect = 1.9e-98
Identity = 178/178 (100.00%), Postives = 178/178 (100.00%), Query Frame = 0

Query: 1   MMGPACSGFGWNEERKCIEAEKSVFDDWVKTARDIEEDDMDINLEDFDIPNPHGLEPPSG 60
           MMGPACSGFGWNEERKCIEAEKSVFDDWVKTARDIEEDDMDINLEDFDIPNPHGLEPPSG
Sbjct: 84  MMGPACSGFGWNEERKCIEAEKSVFDDWVKTARDIEEDDMDINLEDFDIPNPHGLEPPSG 143

Query: 61  EDMPSTPTSMAHDAGSSRPSKKRRSYSGDLMDTFRASMRETSKEIGKIAAWQREKMEIES 120
           EDMPSTPTSMAHDAGSSRPSKKRRSYSGDLMDTFRASMRETSKEIGKIAAWQREKMEIES
Sbjct: 144 EDMPSTPTSMAHDAGSSRPSKKRRSYSGDLMDTFRASMRETSKEIGKIAAWQREKMEIES 203

Query: 121 SLHKRLYVDLQTIPGMDVDDCLIVAESLLPDPTMLHAFLDYPAEWKYRKCMRILGRQP 179
           SLHKRLYVDLQTIPGMDVDDCLIVAESLLPDPTMLHAFLDYPAEWKYRKCMRILGRQP
Sbjct: 204 SLHKRLYVDLQTIPGMDVDDCLIVAESLLPDPTMLHAFLDYPAEWKYRKCMRILGRQP 261

BLAST of MELO3C029646 vs. ExPASy TrEMBL
Match: A0A5A7VG45 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1023G00220 PE=3 SV=1)

HSP 1 Score: 317.8 bits (813), Expect = 2.9e-83
Identity = 158/179 (88.27%), Postives = 162/179 (90.50%), Query Frame = 0

Query: 1   MMGPACSGFGWNEERKCIEAE-KSVFDDWVKTARDIEEDDMDINLEDFDIPNPHGLEPPS 60
           MMGPACS FGWNEERK      K+  +   +TARD EEDDMDINLEDFDIPNPHGLEPPS
Sbjct: 369 MMGPACSEFGWNEERKATGGRCKTPVEIGSQTARDTEEDDMDINLEDFDIPNPHGLEPPS 428

Query: 61  GEDMPSTPTSMAHDAGSSRPSKKRRSYSGDLMDTFRASMRETSKEIGKIAAWQREKMEIE 120
           GEDMPSTPTSMAHDAG  RPSKKRR YSGDLMDTFRASMRETSKEIGKIAAWQREKMEIE
Sbjct: 429 GEDMPSTPTSMAHDAGLCRPSKKRRPYSGDLMDTFRASMRETSKEIGKIAAWQREKMEIE 488

Query: 121 SSLHKRLYVDLQTIPGMDVDDCLIVAESLLPDPTMLHAFLDYPAEWKYRKCMRILGRQP 179
           SSLHKRLY +LQTIPGMDVDDCLIVAESLLPDPTMLHAFLDYPAEWKYRKCMRILGRQP
Sbjct: 489 SSLHKRLYTELQTIPGMDVDDCLIVAESLLPDPTMLHAFLDYPAEWKYRKCMRILGRQP 547

BLAST of MELO3C029646 vs. ExPASy TrEMBL
Match: A0A5D3C7T4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G00330 PE=4 SV=1)

HSP 1 Score: 295.8 bits (756), Expect = 1.2e-76
Identity = 153/204 (75.00%), Postives = 155/204 (75.98%), Query Frame = 0

Query: 1   MMGPACSGFGWNEERKCIEAEKSVFDDWVK------------------------------ 60
           MMGPACSGFGWNE +KCIE EK VFDDWVK                              
Sbjct: 192 MMGPACSGFGWNEGQKCIEVEKPVFDDWVKGHPNAQGLLNKPFPYFYDLEVVFGRDRATG 251

Query: 61  ------------TARDIEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPTSMAHDAGSSR 120
                       TARD EEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPTSM HDAGSSR
Sbjct: 252 GRCKTPVEMSSQTARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPTSMTHDAGSSR 311

Query: 121 PSKKRRSYSGDLMDTFRASMRETSKEIGKIAAWQREKMEIESSLHKRLYVDLQTIPGMDV 163
           PSKKRRSYSGDLMDTFRASMRETSKEIGKIA WQREKMEIESSLHKRLY +LQTIPGMDV
Sbjct: 312 PSKKRRSYSGDLMDTFRASMRETSKEIGKIATWQREKMEIESSLHKRLYAELQTIPGMDV 371

BLAST of MELO3C029646 vs. ExPASy TrEMBL
Match: A0A5A7VGQ0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold418G00930 PE=4 SV=1)

HSP 1 Score: 282.0 bits (720), Expect = 1.8e-72
Identity = 147/205 (71.71%), Postives = 152/205 (74.15%), Query Frame = 0

Query: 1   MMGPACSGFGWNEERKCIEAEKSVFDDWVK------------------------------ 60
           MMGPACS FGWNEE+KCIEA+KSVFDDWVK                              
Sbjct: 1   MMGPACSRFGWNEEQKCIEAQKSVFDDWVKGHPNARGLLNKSFPYFYDLKIMFGRDRATG 60

Query: 61  ------------TARDIEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPTSMAHDAGSSR 120
                        ARD EEDDMDINLEDFDIPNPHGLEPPSGEDM STPTSMAHD GSS+
Sbjct: 61  GRCKTPIEMGLQIARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMSSTPTSMAHDVGSSK 120

Query: 121 PSKKRRSYSGDLMDTFRASMRETSKEIGKIAAWQREKMEIESSLHKRLYVDLQTIPGMDV 164
           PSKKRRSYS DLMDTFRASMRETSKEI KIAAWQREKMEIESS+HKRLY +LQTIPGMDV
Sbjct: 121 PSKKRRSYSEDLMDTFRASMRETSKEIRKIAAWQREKMEIESSIHKRLYAELQTIPGMDV 180

BLAST of MELO3C029646 vs. ExPASy TrEMBL
Match: A0A1S3CC17 (uncharacterized protein LOC103499248 OS=Cucumis melo OX=3656 GN=LOC103499248 PE=4 SV=1)

HSP 1 Score: 279.6 bits (714), Expect = 8.8e-72
Identity = 146/204 (71.57%), Postives = 151/204 (74.02%), Query Frame = 0

Query: 2   MGPACSGFGWNEERKCIEAEKSVFDDWVK------------------------------- 61
           MGPACS FGWNEE+KCIEA+KSVFDDWVK                               
Sbjct: 1   MGPACSRFGWNEEQKCIEAQKSVFDDWVKGHPNARGLLNKSFPYFYDLKIMFGRDRATGG 60

Query: 62  -----------TARDIEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPTSMAHDAGSSRP 121
                       ARD EEDDMDINLEDFDIPNPHGLEPPSGEDM STPTSMAHD GSS+P
Sbjct: 61  RCKTPIEMGLQIARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMSSTPTSMAHDVGSSKP 120

Query: 122 SKKRRSYSGDLMDTFRASMRETSKEIGKIAAWQREKMEIESSLHKRLYVDLQTIPGMDVD 164
           SKKRRSYS DLMDTFRASMRETSKEI KIAAWQREKMEIESS+HKRLY +LQTIPGMDVD
Sbjct: 121 SKKRRSYSEDLMDTFRASMRETSKEIRKIAAWQREKMEIESSIHKRLYAELQTIPGMDVD 180

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0050106.13.9e-98100.00retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0065306.16.1e-8388.27retrotransposon protein [Cucumis melo var. makuwa][more]
TYK07921.12.5e-7675.00hypothetical protein E5676_scaffold265G00330 [Cucumis melo var. makuwa][more]
KAA0067273.13.7e-7271.71retrotransposon protein [Cucumis melo var. makuwa][more]
XP_008460440.11.8e-7171.57PREDICTED: uncharacterized protein LOC103499248 [Cucumis melo][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7U7F71.9e-98100.00Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7VG452.9e-8388.27Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3C7T41.2e-7675.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7VGQ01.8e-7271.71Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A1S3CC178.8e-7271.57uncharacterized protein LOC103499248 OS=Cucumis melo OX=3656 GN=LOC103499248 PE=... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 39..87
NoneNo IPR availablePANTHERPTHR46250MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATEDcoord: 1..31
NoneNo IPR availablePANTHERPTHR46250MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATEDcoord: 35..172
NoneNo IPR availablePANTHERPTHR46250:SF3MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEINcoord: 1..31
NoneNo IPR availablePANTHERPTHR46250:SF3MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEINcoord: 35..172

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C029646.1MELO3C029646.1mRNA