Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAGAAGCAGTACATTGCCATAGCAGAGATGATGGGGCCAGCTTGTAGTGGGTTTGGCTGGAATGAGGAACGAAAGTGCATTGAGGCAGAGAAATCCGTGTTTGATGATTGGGTTAAAGTAAGAAGATGAATATAATTCATACTTTCTATAAAAGTAAAATATAATATACTTACATATGTTAACTCCATGTAGGGACACCCCAATGCTCGATGCCTACTAAATAAACCATTTCCTTACTTTTATGATTTGGAAGTTGTGTTTGGTAGAGATAGGGCTACTGGTGGTAGATGTAAGACACCTGTTGAAATGGGCTCATAGACTGCAAGAGATATTGAGGAAGATGACATGGACATTAATCTTGAAGACTTTGATATTCCAAATCCACATGGACTCGAGCCACCTTCGGGGGAGGACATGCCATCCACTCCAACAAGTATGGCACATGATGCGGGATCATCTAGGCCAAGTAAGAAAAGACGGTCATATTCAGGGGACCTCATGGACACATTTCGTGCAAGTATGCGAGAAACTTCCAAGGAAATTGGAAAGATTGCTGCATGGCAGAGAGAAAAAATGGAAATAGAATCATCCCTACACAAACGATTATATGTTGATTTACAGACTATTCCTGGAATGGACGTGGATGATTGTTTAATTGTAGCCGAGTCTCTATTACCTGATCCCACGATGTTGCACGCATTCCTTGACTACCCAGCAGAATGGAAGTATAGAAAATGCATGCGTATCTTAGGAAGGCAACCATAA
mRNA sequence
AAGAAGCAGTACATTGCCATAGCAGAGATGATGGGGCCAGCTTGTAGTGGGTTTGGCTGGAATGAGGAACGAAAGTGCATTGAGGCAGAGAAATCCGTGTTTGATGATTGGGTTAAAACTGCAAGAGATATTGAGGAAGATGACATGGACATTAATCTTGAAGACTTTGATATTCCAAATCCACATGGACTCGAGCCACCTTCGGGGGAGGACATGCCATCCACTCCAACAAGTATGGCACATGATGCGGGATCATCTAGGCCAAGTAAGAAAAGACGGTCATATTCAGGGGACCTCATGGACACATTTCGTGCAAGTATGCGAGAAACTTCCAAGGAAATTGGAAAGATTGCTGCATGGCAGAGAGAAAAAATGGAAATAGAATCATCCCTACACAAACGATTATATGTTGATTTACAGACTATTCCTGGAATGGACGTGGATGATTGTTTAATTGTAGCCGAGTCTCTATTACCTGATCCCACGATGTTGCACGCATTCCTTGACTACCCAGCAGAATGGAAGTATAGAAAATGCATGCGTATCTTAGGAAGGCAACCATAA
Coding sequence (CDS)
ATGATGGGGCCAGCTTGTAGTGGGTTTGGCTGGAATGAGGAACGAAAGTGCATTGAGGCAGAGAAATCCGTGTTTGATGATTGGGTTAAAACTGCAAGAGATATTGAGGAAGATGACATGGACATTAATCTTGAAGACTTTGATATTCCAAATCCACATGGACTCGAGCCACCTTCGGGGGAGGACATGCCATCCACTCCAACAAGTATGGCACATGATGCGGGATCATCTAGGCCAAGTAAGAAAAGACGGTCATATTCAGGGGACCTCATGGACACATTTCGTGCAAGTATGCGAGAAACTTCCAAGGAAATTGGAAAGATTGCTGCATGGCAGAGAGAAAAAATGGAAATAGAATCATCCCTACACAAACGATTATATGTTGATTTACAGACTATTCCTGGAATGGACGTGGATGATTGTTTAATTGTAGCCGAGTCTCTATTACCTGATCCCACGATGTTGCACGCATTCCTTGACTACCCAGCAGAATGGAAGTATAGAAAATGCATGCGTATCTTAGGAAGGCAACCATAA
Protein sequence
MMGPACSGFGWNEERKCIEAEKSVFDDWVKTARDIEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPTSMAHDAGSSRPSKKRRSYSGDLMDTFRASMRETSKEIGKIAAWQREKMEIESSLHKRLYVDLQTIPGMDVDDCLIVAESLLPDPTMLHAFLDYPAEWKYRKCMRILGRQP
Homology
BLAST of MELO3C029646 vs. NCBI nr
Match:
KAA0050106.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 368.2 bits (944), Expect = 3.9e-98
Identity = 178/178 (100.00%), Postives = 178/178 (100.00%), Query Frame = 0
Query: 1 MMGPACSGFGWNEERKCIEAEKSVFDDWVKTARDIEEDDMDINLEDFDIPNPHGLEPPSG 60
MMGPACSGFGWNEERKCIEAEKSVFDDWVKTARDIEEDDMDINLEDFDIPNPHGLEPPSG
Sbjct: 84 MMGPACSGFGWNEERKCIEAEKSVFDDWVKTARDIEEDDMDINLEDFDIPNPHGLEPPSG 143
Query: 61 EDMPSTPTSMAHDAGSSRPSKKRRSYSGDLMDTFRASMRETSKEIGKIAAWQREKMEIES 120
EDMPSTPTSMAHDAGSSRPSKKRRSYSGDLMDTFRASMRETSKEIGKIAAWQREKMEIES
Sbjct: 144 EDMPSTPTSMAHDAGSSRPSKKRRSYSGDLMDTFRASMRETSKEIGKIAAWQREKMEIES 203
Query: 121 SLHKRLYVDLQTIPGMDVDDCLIVAESLLPDPTMLHAFLDYPAEWKYRKCMRILGRQP 179
SLHKRLYVDLQTIPGMDVDDCLIVAESLLPDPTMLHAFLDYPAEWKYRKCMRILGRQP
Sbjct: 204 SLHKRLYVDLQTIPGMDVDDCLIVAESLLPDPTMLHAFLDYPAEWKYRKCMRILGRQP 261
BLAST of MELO3C029646 vs. NCBI nr
Match:
KAA0065306.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 317.8 bits (813), Expect = 6.1e-83
Identity = 158/179 (88.27%), Postives = 162/179 (90.50%), Query Frame = 0
Query: 1 MMGPACSGFGWNEERKCIEAE-KSVFDDWVKTARDIEEDDMDINLEDFDIPNPHGLEPPS 60
MMGPACS FGWNEERK K+ + +TARD EEDDMDINLEDFDIPNPHGLEPPS
Sbjct: 369 MMGPACSEFGWNEERKATGGRCKTPVEIGSQTARDTEEDDMDINLEDFDIPNPHGLEPPS 428
Query: 61 GEDMPSTPTSMAHDAGSSRPSKKRRSYSGDLMDTFRASMRETSKEIGKIAAWQREKMEIE 120
GEDMPSTPTSMAHDAG RPSKKRR YSGDLMDTFRASMRETSKEIGKIAAWQREKMEIE
Sbjct: 429 GEDMPSTPTSMAHDAGLCRPSKKRRPYSGDLMDTFRASMRETSKEIGKIAAWQREKMEIE 488
Query: 121 SSLHKRLYVDLQTIPGMDVDDCLIVAESLLPDPTMLHAFLDYPAEWKYRKCMRILGRQP 179
SSLHKRLY +LQTIPGMDVDDCLIVAESLLPDPTMLHAFLDYPAEWKYRKCMRILGRQP
Sbjct: 489 SSLHKRLYTELQTIPGMDVDDCLIVAESLLPDPTMLHAFLDYPAEWKYRKCMRILGRQP 547
BLAST of MELO3C029646 vs. NCBI nr
Match:
TYK07921.1 (hypothetical protein E5676_scaffold265G00330 [Cucumis melo var. makuwa])
HSP 1 Score: 295.8 bits (756), Expect = 2.5e-76
Identity = 153/204 (75.00%), Postives = 155/204 (75.98%), Query Frame = 0
Query: 1 MMGPACSGFGWNEERKCIEAEKSVFDDWVK------------------------------ 60
MMGPACSGFGWNE +KCIE EK VFDDWVK
Sbjct: 192 MMGPACSGFGWNEGQKCIEVEKPVFDDWVKGHPNAQGLLNKPFPYFYDLEVVFGRDRATG 251
Query: 61 ------------TARDIEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPTSMAHDAGSSR 120
TARD EEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPTSM HDAGSSR
Sbjct: 252 GRCKTPVEMSSQTARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPTSMTHDAGSSR 311
Query: 121 PSKKRRSYSGDLMDTFRASMRETSKEIGKIAAWQREKMEIESSLHKRLYVDLQTIPGMDV 163
PSKKRRSYSGDLMDTFRASMRETSKEIGKIA WQREKMEIESSLHKRLY +LQTIPGMDV
Sbjct: 312 PSKKRRSYSGDLMDTFRASMRETSKEIGKIATWQREKMEIESSLHKRLYAELQTIPGMDV 371
BLAST of MELO3C029646 vs. NCBI nr
Match:
KAA0067273.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 282.0 bits (720), Expect = 3.7e-72
Identity = 147/205 (71.71%), Postives = 152/205 (74.15%), Query Frame = 0
Query: 1 MMGPACSGFGWNEERKCIEAEKSVFDDWVK------------------------------ 60
MMGPACS FGWNEE+KCIEA+KSVFDDWVK
Sbjct: 1 MMGPACSRFGWNEEQKCIEAQKSVFDDWVKGHPNARGLLNKSFPYFYDLKIMFGRDRATG 60
Query: 61 ------------TARDIEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPTSMAHDAGSSR 120
ARD EEDDMDINLEDFDIPNPHGLEPPSGEDM STPTSMAHD GSS+
Sbjct: 61 GRCKTPIEMGLQIARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMSSTPTSMAHDVGSSK 120
Query: 121 PSKKRRSYSGDLMDTFRASMRETSKEIGKIAAWQREKMEIESSLHKRLYVDLQTIPGMDV 164
PSKKRRSYS DLMDTFRASMRETSKEI KIAAWQREKMEIESS+HKRLY +LQTIPGMDV
Sbjct: 121 PSKKRRSYSEDLMDTFRASMRETSKEIRKIAAWQREKMEIESSIHKRLYAELQTIPGMDV 180
BLAST of MELO3C029646 vs. NCBI nr
Match:
XP_008460440.1 (PREDICTED: uncharacterized protein LOC103499248 [Cucumis melo])
HSP 1 Score: 279.6 bits (714), Expect = 1.8e-71
Identity = 146/204 (71.57%), Postives = 151/204 (74.02%), Query Frame = 0
Query: 2 MGPACSGFGWNEERKCIEAEKSVFDDWVK------------------------------- 61
MGPACS FGWNEE+KCIEA+KSVFDDWVK
Sbjct: 1 MGPACSRFGWNEEQKCIEAQKSVFDDWVKGHPNARGLLNKSFPYFYDLKIMFGRDRATGG 60
Query: 62 -----------TARDIEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPTSMAHDAGSSRP 121
ARD EEDDMDINLEDFDIPNPHGLEPPSGEDM STPTSMAHD GSS+P
Sbjct: 61 RCKTPIEMGLQIARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMSSTPTSMAHDVGSSKP 120
Query: 122 SKKRRSYSGDLMDTFRASMRETSKEIGKIAAWQREKMEIESSLHKRLYVDLQTIPGMDVD 164
SKKRRSYS DLMDTFRASMRETSKEI KIAAWQREKMEIESS+HKRLY +LQTIPGMDVD
Sbjct: 121 SKKRRSYSEDLMDTFRASMRETSKEIRKIAAWQREKMEIESSIHKRLYAELQTIPGMDVD 180
BLAST of MELO3C029646 vs. ExPASy TrEMBL
Match:
A0A5A7U7F7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G001200 PE=4 SV=1)
HSP 1 Score: 368.2 bits (944), Expect = 1.9e-98
Identity = 178/178 (100.00%), Postives = 178/178 (100.00%), Query Frame = 0
Query: 1 MMGPACSGFGWNEERKCIEAEKSVFDDWVKTARDIEEDDMDINLEDFDIPNPHGLEPPSG 60
MMGPACSGFGWNEERKCIEAEKSVFDDWVKTARDIEEDDMDINLEDFDIPNPHGLEPPSG
Sbjct: 84 MMGPACSGFGWNEERKCIEAEKSVFDDWVKTARDIEEDDMDINLEDFDIPNPHGLEPPSG 143
Query: 61 EDMPSTPTSMAHDAGSSRPSKKRRSYSGDLMDTFRASMRETSKEIGKIAAWQREKMEIES 120
EDMPSTPTSMAHDAGSSRPSKKRRSYSGDLMDTFRASMRETSKEIGKIAAWQREKMEIES
Sbjct: 144 EDMPSTPTSMAHDAGSSRPSKKRRSYSGDLMDTFRASMRETSKEIGKIAAWQREKMEIES 203
Query: 121 SLHKRLYVDLQTIPGMDVDDCLIVAESLLPDPTMLHAFLDYPAEWKYRKCMRILGRQP 179
SLHKRLYVDLQTIPGMDVDDCLIVAESLLPDPTMLHAFLDYPAEWKYRKCMRILGRQP
Sbjct: 204 SLHKRLYVDLQTIPGMDVDDCLIVAESLLPDPTMLHAFLDYPAEWKYRKCMRILGRQP 261
BLAST of MELO3C029646 vs. ExPASy TrEMBL
Match:
A0A5A7VG45 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1023G00220 PE=3 SV=1)
HSP 1 Score: 317.8 bits (813), Expect = 2.9e-83
Identity = 158/179 (88.27%), Postives = 162/179 (90.50%), Query Frame = 0
Query: 1 MMGPACSGFGWNEERKCIEAE-KSVFDDWVKTARDIEEDDMDINLEDFDIPNPHGLEPPS 60
MMGPACS FGWNEERK K+ + +TARD EEDDMDINLEDFDIPNPHGLEPPS
Sbjct: 369 MMGPACSEFGWNEERKATGGRCKTPVEIGSQTARDTEEDDMDINLEDFDIPNPHGLEPPS 428
Query: 61 GEDMPSTPTSMAHDAGSSRPSKKRRSYSGDLMDTFRASMRETSKEIGKIAAWQREKMEIE 120
GEDMPSTPTSMAHDAG RPSKKRR YSGDLMDTFRASMRETSKEIGKIAAWQREKMEIE
Sbjct: 429 GEDMPSTPTSMAHDAGLCRPSKKRRPYSGDLMDTFRASMRETSKEIGKIAAWQREKMEIE 488
Query: 121 SSLHKRLYVDLQTIPGMDVDDCLIVAESLLPDPTMLHAFLDYPAEWKYRKCMRILGRQP 179
SSLHKRLY +LQTIPGMDVDDCLIVAESLLPDPTMLHAFLDYPAEWKYRKCMRILGRQP
Sbjct: 489 SSLHKRLYTELQTIPGMDVDDCLIVAESLLPDPTMLHAFLDYPAEWKYRKCMRILGRQP 547
BLAST of MELO3C029646 vs. ExPASy TrEMBL
Match:
A0A5D3C7T4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G00330 PE=4 SV=1)
HSP 1 Score: 295.8 bits (756), Expect = 1.2e-76
Identity = 153/204 (75.00%), Postives = 155/204 (75.98%), Query Frame = 0
Query: 1 MMGPACSGFGWNEERKCIEAEKSVFDDWVK------------------------------ 60
MMGPACSGFGWNE +KCIE EK VFDDWVK
Sbjct: 192 MMGPACSGFGWNEGQKCIEVEKPVFDDWVKGHPNAQGLLNKPFPYFYDLEVVFGRDRATG 251
Query: 61 ------------TARDIEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPTSMAHDAGSSR 120
TARD EEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPTSM HDAGSSR
Sbjct: 252 GRCKTPVEMSSQTARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPTSMTHDAGSSR 311
Query: 121 PSKKRRSYSGDLMDTFRASMRETSKEIGKIAAWQREKMEIESSLHKRLYVDLQTIPGMDV 163
PSKKRRSYSGDLMDTFRASMRETSKEIGKIA WQREKMEIESSLHKRLY +LQTIPGMDV
Sbjct: 312 PSKKRRSYSGDLMDTFRASMRETSKEIGKIATWQREKMEIESSLHKRLYAELQTIPGMDV 371
BLAST of MELO3C029646 vs. ExPASy TrEMBL
Match:
A0A5A7VGQ0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold418G00930 PE=4 SV=1)
HSP 1 Score: 282.0 bits (720), Expect = 1.8e-72
Identity = 147/205 (71.71%), Postives = 152/205 (74.15%), Query Frame = 0
Query: 1 MMGPACSGFGWNEERKCIEAEKSVFDDWVK------------------------------ 60
MMGPACS FGWNEE+KCIEA+KSVFDDWVK
Sbjct: 1 MMGPACSRFGWNEEQKCIEAQKSVFDDWVKGHPNARGLLNKSFPYFYDLKIMFGRDRATG 60
Query: 61 ------------TARDIEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPTSMAHDAGSSR 120
ARD EEDDMDINLEDFDIPNPHGLEPPSGEDM STPTSMAHD GSS+
Sbjct: 61 GRCKTPIEMGLQIARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMSSTPTSMAHDVGSSK 120
Query: 121 PSKKRRSYSGDLMDTFRASMRETSKEIGKIAAWQREKMEIESSLHKRLYVDLQTIPGMDV 164
PSKKRRSYS DLMDTFRASMRETSKEI KIAAWQREKMEIESS+HKRLY +LQTIPGMDV
Sbjct: 121 PSKKRRSYSEDLMDTFRASMRETSKEIRKIAAWQREKMEIESSIHKRLYAELQTIPGMDV 180
BLAST of MELO3C029646 vs. ExPASy TrEMBL
Match:
A0A1S3CC17 (uncharacterized protein LOC103499248 OS=Cucumis melo OX=3656 GN=LOC103499248 PE=4 SV=1)
HSP 1 Score: 279.6 bits (714), Expect = 8.8e-72
Identity = 146/204 (71.57%), Postives = 151/204 (74.02%), Query Frame = 0
Query: 2 MGPACSGFGWNEERKCIEAEKSVFDDWVK------------------------------- 61
MGPACS FGWNEE+KCIEA+KSVFDDWVK
Sbjct: 1 MGPACSRFGWNEEQKCIEAQKSVFDDWVKGHPNARGLLNKSFPYFYDLKIMFGRDRATGG 60
Query: 62 -----------TARDIEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPTSMAHDAGSSRP 121
ARD EEDDMDINLEDFDIPNPHGLEPPSGEDM STPTSMAHD GSS+P
Sbjct: 61 RCKTPIEMGLQIARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMSSTPTSMAHDVGSSKP 120
Query: 122 SKKRRSYSGDLMDTFRASMRETSKEIGKIAAWQREKMEIESSLHKRLYVDLQTIPGMDVD 164
SKKRRSYS DLMDTFRASMRETSKEI KIAAWQREKMEIESS+HKRLY +LQTIPGMDVD
Sbjct: 121 SKKRRSYSEDLMDTFRASMRETSKEIRKIAAWQREKMEIESSIHKRLYAELQTIPGMDVD 180
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAA0050106.1 | 3.9e-98 | 100.00 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
KAA0065306.1 | 6.1e-83 | 88.27 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
TYK07921.1 | 2.5e-76 | 75.00 | hypothetical protein E5676_scaffold265G00330 [Cucumis melo var. makuwa] | [more] |
KAA0067273.1 | 3.7e-72 | 71.71 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
XP_008460440.1 | 1.8e-71 | 71.57 | PREDICTED: uncharacterized protein LOC103499248 [Cucumis melo] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7U7F7 | 1.9e-98 | 100.00 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
A0A5A7VG45 | 2.9e-83 | 88.27 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
A0A5D3C7T4 | 1.2e-76 | 75.00 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5A7VGQ0 | 1.8e-72 | 71.71 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
A0A1S3CC17 | 8.8e-72 | 71.57 | uncharacterized protein LOC103499248 OS=Cucumis melo OX=3656 GN=LOC103499248 PE=... | [more] |
Match Name | E-value | Identity | Description | |