MELO3C029565.jh1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO3C029565.jh1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	Ribosomal protein L35A
Location	chr02: 24746707 .. 24747236 (-)
RNA-Seq Expression	MELO3C029565.jh1
Synteny	MELO3C029565.jh1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

TAGCTGAAGCAAAAAACCGCTGAAGATGGTGAAGGGAAGGCAGGGAGAGAGAGTCAGACTCTACACCAGGGGAACAATTTTCGGCTACAAGAGGTCGAAGTCGAACCTGTACCCAAACACTTCTTTACTCCAGATTGAGGGTGTTAATTCTAAGGATGAGGTTTCTTGGTACCAAGGGAAATGAGTGGCATATATATACAAGGCTAAAGTGAAGAAGAATGGATGCTATTATCGTTGCATTTGGGGCAAAGTAGCAAGACCTCATGGTATCAGTGGCATCGTTAGAGCGAAGTTCAAGCCTAATCTCCCACCAAAGTCCATGGGTGACAGGGTCAGAGTATTTATGTACCCCAGCAACATTTAAGCCTGAAGAACCGGATTGAAACAAGTGTTTGCTATATGAAGGAATTTATGTTTTTATTATATTTTGTGAGCTAAGATAGAAGCATTTTATGCTTCTGAACTGAGTCATTTTTTGCTGTTTAGGTAATGTCTAACACCAGAGTAGTTAAAACAGAATTTAAATAGAA

mRNA sequence

TAGCTGAAGCAAAAAACCGCTGAAGATGGTGAAGGGAAGGCAGGGAGAGAGAGTCAGACTCTACACCAGGGGAACAATTTTCGGCTACAAGAGGTCGAAGTCGAACCTGTACCCAAACACTTCTTTACTCCAGATTGAGGGTGTTAATTCTAAGGATGAGGTTTCTTGGTACCAAGGGAAATGAGTGGCATATATATACAAGGCTAAAGTGAAGAAGAATGGATGCTATTATCGTTGCATTTGGGGCAAAGTAGCAAGACCTCATGGTATCAGTGGCATCGTTAGAGCGAAGTTCAAGCCTAATCTCCCACCAAAGTCCATGGGTGACAGGGTCAGAGTATTTATGTACCCCAGCAACATTTAAGCCTGAAGAACCGGATTGAAACAAGTGTTTGCTATATGAAGGAATTTATGTTTTTATTATATTTTGTGAGCTAAGATAGAAGCATTTTATGCTTCTGAACTGAGTCATTTTTTGCTGTTTAGGTAATGTCTAACACCAGAGTAGTTAAAACAGAATTTAAATAGAA

Coding sequence (CDS)

ATGGTGAAGGGAAGGCAGGGAGAGAGAGTCAGACTCTACACCAGGGGAACAATTTTCGGCTACAAGAGGTCGAAGTCGAACCTGTACCCAAACACTTCTTTACTCCAGATTGAGGGTGTTAATTCTAAGGATGAGGTTTCTTGGTACCAAGGGAAATGA

Protein sequence

MVKGRQGERVRLYTRGTIFGYKRSKSNLYPNTSLLQIEGVNSKDEVSWYQGK

Homology

[Close]

BLAST of MELO3C029565.jh1 vs. NCBI nr
Match: XP_008463199.1 (PREDICTED: 60S ribosomal protein L35a-1 [Cucumis melo] >XP_011654980.1 60S ribosomal protein L35a-1 [Cucumis sativus] >KAA0037334.1 Ribosomal protein L35A [Cucumis melo var. makuwa] >KGN50623.1 hypothetical protein Csa_021400 [Cucumis sativus] >TYJ97573.1 Ribosomal protein L35A [Cucumis melo var. makuwa])

HSP 1 Score: 104 bits (259), Expect = 2.56e-27
Identity = 50/52 (96.15%), Postives = 50/52 (96.15%), Query Frame = 0


Query: 1  MVKGRQGERVRLYTRGTIFGYKRSKSNLYPNTSLLQIEGVNSKDEVSWYQGK 52
          MVKGRQGERVRLYTRGTI GYKRSKSN YPNTSLLQIEGVNSKDEVSWYQGK
Sbjct: 1  MVKGRQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGK 52

[Close]

BLAST of MELO3C029565.jh1 vs. NCBI nr
Match: XP_038891868.1 (60S ribosomal protein L35a-1 [Benincasa hispida])

HSP 1 Score: 104 bits (259), Expect = 2.56e-27
Identity = 50/52 (96.15%), Postives = 50/52 (96.15%), Query Frame = 0


Query: 1  MVKGRQGERVRLYTRGTIFGYKRSKSNLYPNTSLLQIEGVNSKDEVSWYQGK 52
          MVKGRQGERVRLYTRGTI GYKRSKSN YPNTSLLQIEGVNSKDEVSWYQGK
Sbjct: 1  MVKGRQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGK 52

[Close]

BLAST of MELO3C029565.jh1 vs. NCBI nr
Match: XP_022996736.1 (60S ribosomal protein L35a-1 [Cucurbita maxima] >XP_022996745.1 60S ribosomal protein L35a-1 [Cucurbita maxima])

HSP 1 Score: 102 bits (254), Expect = 1.48e-26
Identity = 49/52 (94.23%), Postives = 49/52 (94.23%), Query Frame = 0


Query: 1  MVKGRQGERVRLYTRGTIFGYKRSKSNLYPNTSLLQIEGVNSKDEVSWYQGK 52
          MVKGRQGERVRLY RGTI GYKRSKSN YPNTSLLQIEGVNSKDEVSWYQGK
Sbjct: 1  MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGK 52

[Close]

BLAST of MELO3C029565.jh1 vs. NCBI nr
Match: XP_022957040.1 (60S ribosomal protein L35a-1 [Cucurbita moschata] >XP_022978196.1 60S ribosomal protein L35a-1-like [Cucurbita maxima] >XP_023529930.1 60S ribosomal protein L35a-1 [Cucurbita pepo subsp. pepo] >KAG7031585.1 60S ribosomal protein L35a-1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 102 bits (253), Expect = 2.10e-26
Identity = 49/52 (94.23%), Postives = 49/52 (94.23%), Query Frame = 0


Query: 1  MVKGRQGERVRLYTRGTIFGYKRSKSNLYPNTSLLQIEGVNSKDEVSWYQGK 52
          MVKG QGERVRLYTRGTI GYKRSKSN YPNTSLLQIEGVNSKDEVSWYQGK
Sbjct: 1  MVKGSQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGK 52

[Close]

BLAST of MELO3C029565.jh1 vs. NCBI nr
Match: XP_023734154.1 (60S ribosomal protein L35a-1 [Lactuca sativa] >PLY73548.1 hypothetical protein LSAT_9X63160 [Lactuca sativa])

HSP 1 Score: 102 bits (253), Expect = 2.10e-26
Identity = 48/52 (92.31%), Postives = 50/52 (96.15%), Query Frame = 0


Query: 1  MVKGRQGERVRLYTRGTIFGYKRSKSNLYPNTSLLQIEGVNSKDEVSWYQGK 52
          MVKGRQGERVRLYTRGTI GYKRSKSN YPNTSL+QIEGVN+KDEVSWYQGK
Sbjct: 1  MVKGRQGERVRLYTRGTILGYKRSKSNQYPNTSLVQIEGVNTKDEVSWYQGK 52

[Close]

BLAST of MELO3C029565.jh1 vs. ExPASy Swiss-Prot
Match: Q9LMK0 (60S ribosomal protein L35a-1 OS=Arabidopsis thaliana OX=3702 GN=RPL35AA PE=3 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 3.2e-19
Identity = 43/52 (82.69%), Postives = 48/52 (92.31%), Query Frame = 0


Query: 1  MVKGRQGERVRLYTRGTIFGYKRSKSNLYPNTSLLQIEGVNSKDEVSWYQGK 53
          MVKGRQGERVRLY RGTI GYKRSKSN YPNTSL+Q+EGVN+ +EVSWY+GK
Sbjct: 1  MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLVQVEGVNTTEEVSWYKGK 52

[Close]

BLAST of MELO3C029565.jh1 vs. ExPASy Swiss-Prot
Match: Q9C912 (60S ribosomal protein L35a-3 OS=Arabidopsis thaliana OX=3702 GN=RPL35AC PE=3 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 3.2e-19
Identity = 43/52 (82.69%), Postives = 49/52 (94.23%), Query Frame = 0


Query: 1  MVKGRQGERVRLYTRGTIFGYKRSKSNLYPNTSLLQIEGVNSKDEVSWYQGK 53
          MVKGRQGERVRLY RGTI GYKRSKSN YPNTSL+QIEGVN+++EV+WY+GK
Sbjct: 1  MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLVQIEGVNTQEEVNWYKGK 52

[Close]

BLAST of MELO3C029565.jh1 vs. ExPASy Swiss-Prot
Match: Q9FZH0 (60S ribosomal protein L35a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL35AB PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 2.7e-18
Identity = 40/51 (78.43%), Postives = 48/51 (94.12%), Query Frame = 0


Query: 2  VKGRQGERVRLYTRGTIFGYKRSKSNLYPNTSLLQIEGVNSKDEVSWYQGK 53
          +KGRQGERVRLY RGT+ GYKRSKSN YPNTSL+QIEGVN+++EV+WY+GK
Sbjct: 1  MKGRQGERVRLYVRGTVLGYKRSKSNQYPNTSLIQIEGVNTQEEVNWYKGK 51

[Close]

BLAST of MELO3C029565.jh1 vs. ExPASy Swiss-Prot
Match: P51422 (60S ribosomal protein L35a-4 OS=Arabidopsis thaliana OX=3702 GN=RPL35AD PE=3 SV=2)

HSP 1 Score: 91.3 bits (225), Expect = 3.5e-18
Identity = 40/51 (78.43%), Postives = 48/51 (94.12%), Query Frame = 0


Query: 2  VKGRQGERVRLYTRGTIFGYKRSKSNLYPNTSLLQIEGVNSKDEVSWYQGK 53
          +KGRQGERVRLY RGT+ GYKRSKSN YPNTSL+QIEGVN+++EV+WY+GK
Sbjct: 1  MKGRQGERVRLYVRGTVLGYKRSKSNQYPNTSLVQIEGVNTQEEVNWYKGK 51

[Close]

BLAST of MELO3C029565.jh1 vs. ExPASy Swiss-Prot
Match: Q55BN7 (60S ribosomal protein L35a OS=Dictyostelium discoideum OX=44689 GN=rpl35a PE=3 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 6.9e-06
Identity = 19/42 (45.24%), Postives = 34/42 (80.95%), Query Frame = 0


Query: 11 RLYTRGTIFGYKRSKSNLYPNTSLLQIEGVNSKDEVSWYQGK 53
          ++Y++G + GY+RS++  YPN SL++IEGV S+++ ++Y GK
Sbjct: 3  KIYSKGVVLGYRRSQATQYPNISLIKIEGVVSREDSTFYLGK 44

[Close]

BLAST of MELO3C029565.jh1 vs. ExPASy TrEMBL
Match: A0A5A7T1I6 (Ribosomal protein L35A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold85G00970 PE=3 SV=1)

HSP 1 Score: 104 bits (259), Expect = 1.24e-27
Identity = 50/52 (96.15%), Postives = 50/52 (96.15%), Query Frame = 0


Query: 1  MVKGRQGERVRLYTRGTIFGYKRSKSNLYPNTSLLQIEGVNSKDEVSWYQGK 52
          MVKGRQGERVRLYTRGTI GYKRSKSN YPNTSLLQIEGVNSKDEVSWYQGK
Sbjct: 1  MVKGRQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGK 52

[Close]

BLAST of MELO3C029565.jh1 vs. ExPASy TrEMBL
Match: A0A0A0KM11 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G198130 PE=3 SV=1)

HSP 1 Score: 104 bits (259), Expect = 1.24e-27
Identity = 50/52 (96.15%), Postives = 50/52 (96.15%), Query Frame = 0


Query: 1  MVKGRQGERVRLYTRGTIFGYKRSKSNLYPNTSLLQIEGVNSKDEVSWYQGK 52
          MVKGRQGERVRLYTRGTI GYKRSKSN YPNTSLLQIEGVNSKDEVSWYQGK
Sbjct: 1  MVKGRQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGK 52

[Close]

BLAST of MELO3C029565.jh1 vs. ExPASy TrEMBL
Match: A0A1S3CIN8 (60S ribosomal protein L35a-1 OS=Cucumis melo OX=3656 GN=LOC103501409 PE=3 SV=1)

HSP 1 Score: 104 bits (259), Expect = 1.24e-27
Identity = 50/52 (96.15%), Postives = 50/52 (96.15%), Query Frame = 0


Query: 1  MVKGRQGERVRLYTRGTIFGYKRSKSNLYPNTSLLQIEGVNSKDEVSWYQGK 52
          MVKGRQGERVRLYTRGTI GYKRSKSN YPNTSLLQIEGVNSKDEVSWYQGK
Sbjct: 1  MVKGRQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGK 52

[Close]

BLAST of MELO3C029565.jh1 vs. ExPASy TrEMBL
Match: A0A6J1K7M6 (60S ribosomal protein L35a-1 OS=Cucurbita maxima OX=3661 GN=LOC111491886 PE=3 SV=1)

HSP 1 Score: 102 bits (254), Expect = 7.15e-27
Identity = 49/52 (94.23%), Postives = 49/52 (94.23%), Query Frame = 0


Query: 1  MVKGRQGERVRLYTRGTIFGYKRSKSNLYPNTSLLQIEGVNSKDEVSWYQGK 52
          MVKGRQGERVRLY RGTI GYKRSKSN YPNTSLLQIEGVNSKDEVSWYQGK
Sbjct: 1  MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGK 52

[Close]

BLAST of MELO3C029565.jh1 vs. ExPASy TrEMBL
Match: A0A6J1IM24 (60S ribosomal protein L35a-1-like OS=Cucurbita maxima OX=3661 GN=LOC111478250 PE=3 SV=1)

HSP 1 Score: 102 bits (253), Expect = 1.01e-26
Identity = 49/52 (94.23%), Postives = 49/52 (94.23%), Query Frame = 0


Query: 1  MVKGRQGERVRLYTRGTIFGYKRSKSNLYPNTSLLQIEGVNSKDEVSWYQGK 52
          MVKG QGERVRLYTRGTI GYKRSKSN YPNTSLLQIEGVNSKDEVSWYQGK
Sbjct: 1  MVKGSQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGK 52

[Close]

BLAST of MELO3C029565.jh1 vs. TAIR 10
Match: AT1G07070.1 (Ribosomal protein L35Ae family protein )

HSP 1 Score: 94.7 bits (234), Expect = 2.3e-20
Identity = 43/52 (82.69%), Postives = 48/52 (92.31%), Query Frame = 0


Query: 1  MVKGRQGERVRLYTRGTIFGYKRSKSNLYPNTSLLQIEGVNSKDEVSWYQGK 53
          MVKGRQGERVRLY RGTI GYKRSKSN YPNTSL+Q+EGVN+ +EVSWY+GK
Sbjct: 1  MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLVQVEGVNTTEEVSWYKGK 52

[Close]

BLAST of MELO3C029565.jh1 vs. TAIR 10
Match: AT1G74270.1 (Ribosomal protein L35Ae family protein )

HSP 1 Score: 94.7 bits (234), Expect = 2.3e-20
Identity = 43/52 (82.69%), Postives = 49/52 (94.23%), Query Frame = 0


Query: 1  MVKGRQGERVRLYTRGTIFGYKRSKSNLYPNTSLLQIEGVNSKDEVSWYQGK 53
          MVKGRQGERVRLY RGTI GYKRSKSN YPNTSL+QIEGVN+++EV+WY+GK
Sbjct: 1  MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLVQIEGVNTQEEVNWYKGK 52

[Close]

BLAST of MELO3C029565.jh1 vs. TAIR 10
Match: AT1G41880.1 (Ribosomal protein L35Ae family protein )

HSP 1 Score: 91.7 bits (226), Expect = 1.9e-19
Identity = 40/51 (78.43%), Postives = 48/51 (94.12%), Query Frame = 0


Query: 2  VKGRQGERVRLYTRGTIFGYKRSKSNLYPNTSLLQIEGVNSKDEVSWYQGK 53
          +KGRQGERVRLY RGT+ GYKRSKSN YPNTSL+QIEGVN+++EV+WY+GK
Sbjct: 1  MKGRQGERVRLYVRGTVLGYKRSKSNQYPNTSLIQIEGVNTQEEVNWYKGK 51

[Close]

BLAST of MELO3C029565.jh1 vs. TAIR 10
Match: AT3G55750.1 (Ribosomal protein L35Ae family protein )

HSP 1 Score: 91.3 bits (225), Expect = 2.5e-19
Identity = 40/51 (78.43%), Postives = 48/51 (94.12%), Query Frame = 0


Query: 2  VKGRQGERVRLYTRGTIFGYKRSKSNLYPNTSLLQIEGVNSKDEVSWYQGK 53
          +KGRQGERVRLY RGT+ GYKRSKSN YPNTSL+QIEGVN+++EV+WY+GK
Sbjct: 1  MKGRQGERVRLYVRGTVLGYKRSKSNQYPNTSLVQIEGVNTQEEVNWYKGK 51

The following BLAST results are available for this feature:

BLAST of MELO3C029565.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008463199.1	2.56e-27	96.15	PREDICTED: 60S ribosomal protein L35a-1 [Cucumis melo] >XP_011654980.1 60S ribos...	[more]
XP_038891868.1	2.56e-27	96.15	60S ribosomal protein L35a-1 [Benincasa hispida]	[more]
XP_022996736.1	1.48e-26	94.23	60S ribosomal protein L35a-1 [Cucurbita maxima] >XP_022996745.1 60S ribosomal pr...	[more]
XP_022957040.1	2.10e-26	94.23	60S ribosomal protein L35a-1 [Cucurbita moschata] >XP_022978196.1 60S ribosomal ...	[more]
XP_023734154.1	2.10e-26	92.31	60S ribosomal protein L35a-1 [Lactuca sativa] >PLY73548.1 hypothetical protein L...	[more]

BLAST of MELO3C029565.jh1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LMK0	3.2e-19	82.69	60S ribosomal protein L35a-1 OS=Arabidopsis thaliana OX=3702 GN=RPL35AA PE=3 SV=...	[more]
Q9C912	3.2e-19	82.69	60S ribosomal protein L35a-3 OS=Arabidopsis thaliana OX=3702 GN=RPL35AC PE=3 SV=...	[more]
Q9FZH0	2.7e-18	78.43	60S ribosomal protein L35a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL35AB PE=3 SV=...	[more]
P51422	3.5e-18	78.43	60S ribosomal protein L35a-4 OS=Arabidopsis thaliana OX=3702 GN=RPL35AD PE=3 SV=...	[more]
Q55BN7	6.9e-06	45.24	60S ribosomal protein L35a OS=Dictyostelium discoideum OX=44689 GN=rpl35a PE=3 S...	[more]

BLAST of MELO3C029565.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T1I6	1.24e-27	96.15	Ribosomal protein L35A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold8...	[more]
A0A0A0KM11	1.24e-27	96.15	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G198130 PE=3 SV=1	[more]
A0A1S3CIN8	1.24e-27	96.15	60S ribosomal protein L35a-1 OS=Cucumis melo OX=3656 GN=LOC103501409 PE=3 SV=1	[more]
A0A6J1K7M6	7.15e-27	94.23	60S ribosomal protein L35a-1 OS=Cucurbita maxima OX=3661 GN=LOC111491886 PE=3 SV...	[more]
A0A6J1IM24	1.01e-26	94.23	60S ribosomal protein L35a-1-like OS=Cucurbita maxima OX=3661 GN=LOC111478250 PE...	[more]

BLAST of MELO3C029565.jh1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G07070.1	2.3e-20	82.69	Ribosomal protein L35Ae family protein	[more]
AT1G74270.1	2.3e-20	82.69	Ribosomal protein L35Ae family protein	[more]
AT1G41880.1	1.9e-19	78.43	Ribosomal protein L35Ae family protein	[more]
AT3G55750.1	2.5e-19	78.43	Ribosomal protein L35Ae family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038661	Ribosomal protein L35A superfamily	GENE3D	2.40.10.190	translation elongation factor selb, chain A, domain 4	coord: 1..52 e-value: 1.2E-14 score: 55.9
IPR001780	Ribosomal protein L35A	PFAM	PF01247	Ribosomal_L35Ae	coord: 12..52 e-value: 5.3E-13 score: 49.0
IPR001780	Ribosomal protein L35A	PANTHER	PTHR10902	60S RIBOSOMAL PROTEIN L35A	coord: 1..52
None	No IPR available	PANTHER	PTHR10902:SF20	60S RIBOSOMAL PROTEIN L35A-1	coord: 1..52
IPR009000	Translation protein, beta-barrel domain superfamily	SUPERFAMILY	50447	Translation proteins	coord: 12..52

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C029565.jh1.t1	MELO3C029565.jh1.t1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome