MELO3C029530 (gene) Melon (DHL92) v4

Overview
NameMELO3C029530
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionCharged multivesicular body protein 7 isoform X1
Locationchr02: 16445559 .. 16445798 (+)
RNA-Seq ExpressionMELO3C029530
SyntenyMELO3C029530
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GCGACATCCGAATCTGAAGCGAGTGGATTGTGTCTGCTCCAACCGGTGTTTGTCCATGAAGCTCCGACCGCCGTTGTCGCATCTCCACGAACCCAGCCGCCGTCACGATCTCCCATTCGCATGAAGCTTGTTGCACCATCCATCCTTCTCCATAGCACGCTGCCGCACCAGGGCGTGCTCTCCTCGCCATTAAAGAAGCCTCCGTCCTCGAGCAGTCATGTCCCAAGTATGGGTGCATAG

mRNA sequence

GCGACATCCGAATCTGAAGCGAGTGGATTGTGTCTGCTCCAACCGGTGTTTGTCCATGAAGCTCCGACCGCCGTTGTCGCATCTCCACGAACCCAGCCGCCGTCACGATCTCCCATTCGCATGAAGCTTGTTGCACCATCCATCCTTCTCCATAGCACGCTGCCGCACCAGGGCGTGCTCTCCTCGCCATTAAAGAAGCCTCCGTCCTCGAGCAGTCATGTCCCAAGTATGGGTGCATAG

Coding sequence (CDS)

GCGACATCCGAATCTGAAGCGAGTGGATTGTGTCTGCTCCAACCGGTGTTTGTCCATGAAGCTCCGACCGCCGTTGTCGCATCTCCACGAACCCAGCCGCCGTCACGATCTCCCATTCGCATGAAGCTTGTTGCACCATCCATCCTTCTCCATAGCACGCTGCCGCACCAGGGCGTGCTCTCCTCGCCATTAAAGAAGCCTCCGTCCTCGAGCAGTCATGTCCCAAGTATGGGTGCATAG

Protein sequence

ATSESEASGLCLLQPVFVHEAPTAVVASPRTQPPSRSPIRMKLVAPSILLHSTLPHQGVLSSPLKKPPSSSSHVPSMGA
Homology
BLAST of MELO3C029530 vs. NCBI nr
Match: TYK03645.1 (charged multivesicular body protein 7 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 119.8 bits (299), Expect = 1.1e-23
Identity = 62/75 (82.67%), Postives = 69/75 (92.00%), Query Frame = 0

Query: 6   EASGLCLLQPVFVHEAPTAVVASPRTQP-PSRSPIRMKLVAPSILLHSTLPHQGVLSSPL 65
           +ASGLCLLQP+FV+E PT V+ SPRTQP PSRSPIRM+L+APSILL STLPHQGVLSSPL
Sbjct: 107 KASGLCLLQPMFVYEVPTVVLTSPRTQPMPSRSPIRMELIAPSILLRSTLPHQGVLSSPL 166

Query: 66  KKPPSSSSHVPSMGA 80
           KKPPSSSSHVPS+ A
Sbjct: 167 KKPPSSSSHVPSVDA 181

BLAST of MELO3C029530 vs. NCBI nr
Match: KAA0062299.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 119.8 bits (299), Expect = 1.1e-23
Identity = 65/80 (81.25%), Postives = 70/80 (87.50%), Query Frame = 0

Query: 1    ATSESEASGLCLLQPVFVHEAPTAVVASPRTQ-PPSRSPIRMKLVAPSILLHSTLPHQGV 60
            ATSESE SGLCLLQPVF+HEA   VV SPRT+ PPSRSPI M+LVAPSILL STL HQG+
Sbjct: 966  ATSESEVSGLCLLQPVFIHEASIVVVTSPRTKPPPSRSPICMELVAPSILLRSTLLHQGM 1025

Query: 61   LSSPLKKPPSSSSHVPSMGA 80
            LS PLKKPPSSSSHVPS+GA
Sbjct: 1026 LSLPLKKPPSSSSHVPSVGA 1045

BLAST of MELO3C029530 vs. NCBI nr
Match: KAA0050041.1 (charged multivesicular body protein 7 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 115.2 bits (287), Expect = 2.6e-22
Identity = 60/75 (80.00%), Postives = 68/75 (90.67%), Query Frame = 0

Query: 6   EASGLCLLQPVFVHEAPTAVVASPRTQP-PSRSPIRMKLVAPSILLHSTLPHQGVLSSPL 65
           +ASGLCLLQP+FV+E+PT V+  PRTQP  SRSPIRM+L+APSILL STLPHQGVLSSPL
Sbjct: 107 KASGLCLLQPMFVYESPTVVLTPPRTQPMSSRSPIRMELIAPSILLRSTLPHQGVLSSPL 166

Query: 66  KKPPSSSSHVPSMGA 80
           KKPPSSSSHVPS+ A
Sbjct: 167 KKPPSSSSHVPSVDA 181

BLAST of MELO3C029530 vs. NCBI nr
Match: KAA0059932.1 (GPI mannosyltransferase 1-like isoform X1 [Cucumis melo var. makuwa] >TYK24878.1 GPI mannosyltransferase 1-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 97.1 bits (240), Expect = 7.5e-17
Identity = 58/79 (73.42%), Postives = 64/79 (81.01%), Query Frame = 0

Query: 2   TSESEASGLCLLQPVFVHEAPTAVVASPRTQ-PPSRSPIRMKLVAPSILLHSTLPHQGVL 61
           T  S+ASGLCLLQP+FVHEA TAVVASPRTQ PPSRSPIRM++VAPSILL STL HQ VL
Sbjct: 244 TFGSKASGLCLLQPMFVHEASTAVVASPRTQLPPSRSPIRMEIVAPSILLCSTLSHQDVL 303

Query: 62  SSPLKKPPSSSSHVPSMGA 80
                   SSSS+VPS+GA
Sbjct: 304 --------SSSSYVPSVGA 314

BLAST of MELO3C029530 vs. NCBI nr
Match: KAA0047344.1 (zinc finger protein ZAT11 [Cucumis melo var. makuwa])

HSP 1 Score: 77.4 bits (189), Expect = 6.1e-11
Identity = 49/72 (68.06%), Postives = 55/72 (76.39%), Query Frame = 0

Query: 6   EASGLCLLQPVFVHEAPTAVVASPRTQPP-SRSPIRMKLVAPSILLHSTLPHQGVLSSPL 65
           +ASGL LLQ          VVAS RTQ P SRSPI ++LVAPSI+L STLPHQGVL+SPL
Sbjct: 162 KASGLRLLQ---------LVVASLRTQSPLSRSPICVELVAPSIILRSTLPHQGVLTSPL 221

Query: 66  KKPPSSSSHVPS 77
           KKP SSS+HVPS
Sbjct: 222 KKPSSSSNHVPS 224

BLAST of MELO3C029530 vs. ExPASy TrEMBL
Match: A0A5A7V9C3 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold154G00450 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 5.2e-24
Identity = 65/80 (81.25%), Postives = 70/80 (87.50%), Query Frame = 0

Query: 1    ATSESEASGLCLLQPVFVHEAPTAVVASPRTQ-PPSRSPIRMKLVAPSILLHSTLPHQGV 60
            ATSESE SGLCLLQPVF+HEA   VV SPRT+ PPSRSPI M+LVAPSILL STL HQG+
Sbjct: 966  ATSESEVSGLCLLQPVFIHEASIVVVTSPRTKPPPSRSPICMELVAPSILLRSTLLHQGM 1025

Query: 61   LSSPLKKPPSSSSHVPSMGA 80
            LS PLKKPPSSSSHVPS+GA
Sbjct: 1026 LSLPLKKPPSSSSHVPSVGA 1045

BLAST of MELO3C029530 vs. ExPASy TrEMBL
Match: A0A5D3BX22 (Charged multivesicular body protein 7 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1369G00750 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 5.2e-24
Identity = 62/75 (82.67%), Postives = 69/75 (92.00%), Query Frame = 0

Query: 6   EASGLCLLQPVFVHEAPTAVVASPRTQP-PSRSPIRMKLVAPSILLHSTLPHQGVLSSPL 65
           +ASGLCLLQP+FV+E PT V+ SPRTQP PSRSPIRM+L+APSILL STLPHQGVLSSPL
Sbjct: 107 KASGLCLLQPMFVYEVPTVVLTSPRTQPMPSRSPIRMELIAPSILLRSTLPHQGVLSSPL 166

Query: 66  KKPPSSSSHVPSMGA 80
           KKPPSSSSHVPS+ A
Sbjct: 167 KKPPSSSSHVPSVDA 181

BLAST of MELO3C029530 vs. ExPASy TrEMBL
Match: A0A5A7U8W2 (Charged multivesicular body protein 7 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G00170 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 1.3e-22
Identity = 60/75 (80.00%), Postives = 68/75 (90.67%), Query Frame = 0

Query: 6   EASGLCLLQPVFVHEAPTAVVASPRTQP-PSRSPIRMKLVAPSILLHSTLPHQGVLSSPL 65
           +ASGLCLLQP+FV+E+PT V+  PRTQP  SRSPIRM+L+APSILL STLPHQGVLSSPL
Sbjct: 107 KASGLCLLQPMFVYESPTVVLTPPRTQPMSSRSPIRMELIAPSILLRSTLPHQGVLSSPL 166

Query: 66  KKPPSSSSHVPSMGA 80
           KKPPSSSSHVPS+ A
Sbjct: 167 KKPPSSSSHVPSVDA 181

BLAST of MELO3C029530 vs. ExPASy TrEMBL
Match: A0A5D3DMR1 (GPI mannosyltransferase 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold184G001490 PE=3 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 3.6e-17
Identity = 58/79 (73.42%), Postives = 64/79 (81.01%), Query Frame = 0

Query: 2   TSESEASGLCLLQPVFVHEAPTAVVASPRTQ-PPSRSPIRMKLVAPSILLHSTLPHQGVL 61
           T  S+ASGLCLLQP+FVHEA TAVVASPRTQ PPSRSPIRM++VAPSILL STL HQ VL
Sbjct: 244 TFGSKASGLCLLQPMFVHEASTAVVASPRTQLPPSRSPIRMEIVAPSILLCSTLSHQDVL 303

Query: 62  SSPLKKPPSSSSHVPSMGA 80
                   SSSS+VPS+GA
Sbjct: 304 --------SSSSYVPSVGA 314

BLAST of MELO3C029530 vs. ExPASy TrEMBL
Match: A0A5A7TWK4 (Zinc finger protein ZAT11 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold908G001660 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 3.0e-11
Identity = 49/72 (68.06%), Postives = 55/72 (76.39%), Query Frame = 0

Query: 6   EASGLCLLQPVFVHEAPTAVVASPRTQPP-SRSPIRMKLVAPSILLHSTLPHQGVLSSPL 65
           +ASGL LLQ          VVAS RTQ P SRSPI ++LVAPSI+L STLPHQGVL+SPL
Sbjct: 162 KASGLRLLQ---------LVVASLRTQSPLSRSPICVELVAPSIILRSTLPHQGVLTSPL 221

Query: 66  KKPPSSSSHVPS 77
           KKP SSS+HVPS
Sbjct: 222 KKPSSSSNHVPS 224

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TYK03645.11.1e-2382.67charged multivesicular body protein 7 isoform X1 [Cucumis melo var. makuwa][more]
KAA0062299.11.1e-2381.25pol protein [Cucumis melo var. makuwa][more]
KAA0050041.12.6e-2280.00charged multivesicular body protein 7 isoform X1 [Cucumis melo var. makuwa][more]
KAA0059932.17.5e-1773.42GPI mannosyltransferase 1-like isoform X1 [Cucumis melo var. makuwa] >TYK24878.1... [more]
KAA0047344.16.1e-1168.06zinc finger protein ZAT11 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7V9C35.2e-2481.25Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold154G00450 PE... [more]
A0A5D3BX225.2e-2482.67Charged multivesicular body protein 7 isoform X1 OS=Cucumis melo var. makuwa OX=... [more]
A0A5A7U8W21.3e-2280.00Charged multivesicular body protein 7 isoform X1 OS=Cucumis melo var. makuwa OX=... [more]
A0A5D3DMR13.6e-1773.42GPI mannosyltransferase 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo... [more]
A0A5A7TWK43.0e-1168.06Zinc finger protein ZAT11 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffo... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 58..79

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C029530.1MELO3C029530.1mRNA