MELO3C029495 (gene) Melon (DHL92) v4

Overview


Name	MELO3C029495
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Cytochrome b559 subunit alpha
Location	chr07: 16663170 .. 16663372 (+)
RNA-Seq Expression	MELO3C029495
Synteny	MELO3C029495

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTGGAAGCACAGGAGAACGTTCTTTTGCTGATATTATCACCAGTATTCGATACTGGGTCATTCATAGCATTACTATACCTTCTCTATTCATTGCAGGTTGGTTATTCGTCAGCACGGGTTTAGCTTACGATGTTTTTGGAAGCCCTCGTCCAAATGAGTATTATACAGAGAGTCGACAAGGAATTCCATTAATAACTGG

mRNA sequence

ATGTCTGGAAGCACAGGAGAACGTTCTTTTGCTGATATTATCACCAGTATTCGATACTGGGTCATTCATAGCATTACTATACCTTCTCTATTCATTGCAGGTTGGTTATTCGTCAGCACGGGTTTAGCTTACGATGTTTTTGGAAGCCCTCGTCCAAATGAGTATTATACAGAGAGTCGACAAGGAATTCCATTAATAACTGG

Coding sequence (CDS)

ATGTCTGGAAGCACAGGAGAACGTTCTTTTGCTGATATTATCACCAGTATTCGATACTGGGTCATTCATAGCATTACTATACCTTCTCTATTCATTGCAGGTTGGTTATTCGTCAGCACGGGTTTAGCTTACGATGTTTTTGGAAGCCCTCGTCCAAATGAGTATTATACAGAGAGTCGACAAGGAATTCCATTAATAACT

Protein sequence

MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYYTESRQGIPLIT

Homology

[Close]

BLAST of MELO3C029495 vs. NCBI nr
Match: YP_009427831.1 (photosystem II protein V [Circaeaster agrestis] >ASV47707.1 photosystem II protein V [Circaeaster agrestis] >QKI32424.1 photosystem II cytochrome b559 alpha subunit [Circaeaster agrestis] >QKI32509.1 photosystem II cytochrome b559 alpha subunit [Circaeaster agrestis] >QKI32594.1 photosystem II cytochrome b559 alpha subunit [Circaeaster agrestis] >QKI32679.1 photosystem II cytochrome b559 alpha subunit [Circaeaster agrestis])

HSP 1 Score: 139.4 bits (350), Expect = 1.1e-29
Identity = 66/67 (98.51%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 1  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYYTESR 60
          MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEY+TESR
Sbjct: 1  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR 60

Query: 61 QGIPLIT 68
          QGIPLIT
Sbjct: 61 QGIPLIT 67

[Close]

BLAST of MELO3C029495 vs. NCBI nr
Match: YP_009993699.1 (photosystem II protein V [Phaleria macrocarpa] >AWI71761.1 photosystem II protein V [Strempeliopsis strempelioides] >KAG9460138.1 hypothetical protein H6P81_chloro000070 [Aristolochia fimbriata] >QNO35448.1 photosystem II protein V [Phaleria macrocarpa])

HSP 1 Score: 139.4 bits (350), Expect = 1.1e-29
Identity = 66/67 (98.51%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 1  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYYTESR 60
          MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEY+TESR
Sbjct: 1  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR 60

Query: 61 QGIPLIT 68
          QGIPLIT
Sbjct: 61 QGIPLIT 67

[Close]

BLAST of MELO3C029495 vs. NCBI nr
Match: YP_009574933.1 (cytochrome b559 subunit alpha [Aristolochia macrophylla] >QBI76414.1 cytochrome b559 subunit alpha [Aristolochia macrophylla])

HSP 1 Score: 139.4 bits (350), Expect = 1.1e-29
Identity = 66/67 (98.51%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 1  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYYTESR 60
          MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEY+TESR
Sbjct: 1  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR 60

Query: 61 QGIPLIT 68
          QGIPLIT
Sbjct: 61 QGIPLIT 67

[Close]

BLAST of MELO3C029495 vs. NCBI nr
Match: YP_009708662.1 (photosystem II protein V [Elytranthe albida] >QEV86271.1 photosystem II protein V [Elytranthe albida])

HSP 1 Score: 139.4 bits (350), Expect = 1.1e-29
Identity = 66/67 (98.51%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 1  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYYTESR 60
          MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEY+TESR
Sbjct: 1  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR 60

Query: 61 QGIPLIT 68
          QGIPLIT
Sbjct: 61 QGIPLIT 67

[Close]

BLAST of MELO3C029495 vs. NCBI nr
Match: YP_009417545.1 (photosystem II cytochrome b559 alpha subunit [Erythronium sibiricum] >AQD17403.1 photosystem II cytochrome b559 alpha subunit [Erythronium sibiricum])

HSP 1 Score: 139.4 bits (350), Expect = 1.1e-29
Identity = 66/67 (98.51%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 1  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYYTESR 60
          MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEY+TESR
Sbjct: 1  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR 60

Query: 61 QGIPLIT 68
          QGIPLIT
Sbjct: 61 QGIPLIT 67

[Close]

BLAST of MELO3C029495 vs. ExPASy Swiss-Prot
Match: Q3V518 (Cytochrome b559 subunit alpha OS=Acorus calamus OX=4465 GN=psbE PE=3 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 1.5e-32
Identity = 66/67 (98.51%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 1  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYYTESR 60
          MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEY+TESR
Sbjct: 1  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR 60

Query: 61 QGIPLIT 68
          QGIPLIT
Sbjct: 61 QGIPLIT 67

[Close]

BLAST of MELO3C029495 vs. ExPASy Swiss-Prot
Match: A1EA25 (Cytochrome b559 subunit alpha OS=Agrostis stolonifera OX=63632 GN=psbE PE=3 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 1.5e-32
Identity = 66/67 (98.51%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 1  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYYTESR 60
          MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEY+TESR
Sbjct: 1  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR 60

Query: 61 QGIPLIT 68
          QGIPLIT
Sbjct: 61 QGIPLIT 67

[Close]

BLAST of MELO3C029495 vs. ExPASy Swiss-Prot
Match: Q70XY9 (Cytochrome b559 subunit alpha OS=Amborella trichopoda OX=13333 GN=psbE PE=3 SV=3)

HSP 1 Score: 139.4 bits (350), Expect = 1.5e-32
Identity = 66/67 (98.51%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 1  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYYTESR 60
          MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEY+TESR
Sbjct: 1  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR 60

Query: 61 QGIPLIT 68
          QGIPLIT
Sbjct: 61 QGIPLIT 67

[Close]

BLAST of MELO3C029495 vs. ExPASy Swiss-Prot
Match: P56779 (Cytochrome b559 subunit alpha OS=Arabidopsis thaliana OX=3702 GN=psbE PE=1 SV=4)

HSP 1 Score: 139.4 bits (350), Expect = 1.5e-32
Identity = 66/67 (98.51%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 1  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYYTESR 60
          MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEY+TESR
Sbjct: 1  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR 60

Query: 61 QGIPLIT 68
          QGIPLIT
Sbjct: 61 QGIPLIT 67

[Close]

BLAST of MELO3C029495 vs. ExPASy Swiss-Prot
Match: P59702 (Cytochrome b559 subunit alpha OS=Atropa belladonna OX=33113 GN=psbE PE=3 SV=3)

HSP 1 Score: 139.4 bits (350), Expect = 1.5e-32
Identity = 66/67 (98.51%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 1  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYYTESR 60
          MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEY+TESR
Sbjct: 1  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR 60

Query: 61 QGIPLIT 68
          QGIPLIT
Sbjct: 61 QGIPLIT 67

[Close]

BLAST of MELO3C029495 vs. ExPASy TrEMBL
Match: A0A218LS32 (Cytochrome b559 subunit alpha OS=Elymus tauri OX=417392 GN=psbE PE=3 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 5.4e-30
Identity = 66/67 (98.51%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 1  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYYTESR 60
          MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEY+TESR
Sbjct: 1  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR 60

Query: 61 QGIPLIT 68
          QGIPLIT
Sbjct: 61 QGIPLIT 67

[Close]

BLAST of MELO3C029495 vs. ExPASy TrEMBL
Match: A0A1W5HYY9 (Cytochrome b559 subunit alpha OS=Oryza grandiglumis OX=29690 GN=psbE PE=3 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 5.4e-30
Identity = 66/67 (98.51%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 1  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYYTESR 60
          MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEY+TESR
Sbjct: 1  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR 60

Query: 61 QGIPLIT 68
          QGIPLIT
Sbjct: 61 QGIPLIT 67

[Close]

BLAST of MELO3C029495 vs. ExPASy TrEMBL
Match: A0A343UJT0 (Cytochrome b559 subunit alpha OS=Asarum sieboldii OX=76098 GN=psbE PE=3 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 5.4e-30
Identity = 66/67 (98.51%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 1  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYYTESR 60
          MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEY+TESR
Sbjct: 1  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR 60

Query: 61 QGIPLIT 68
          QGIPLIT
Sbjct: 61 QGIPLIT 67

[Close]

BLAST of MELO3C029495 vs. ExPASy TrEMBL
Match: F1KLD9 (Cytochrome b559 subunit alpha OS=Fragaria vesca subsp. vesca OX=101020 GN=psbE PE=3 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 5.4e-30
Identity = 66/67 (98.51%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 1  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYYTESR 60
          MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEY+TESR
Sbjct: 1  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR 60

Query: 61 QGIPLIT 68
          QGIPLIT
Sbjct: 61 QGIPLIT 67

[Close]

BLAST of MELO3C029495 vs. ExPASy TrEMBL
Match: A0A1Y0AS34 (Cytochrome b559 subunit alpha OS=Polytoca digitata OX=798336 GN=psbE PE=3 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 5.4e-30
Identity = 66/67 (98.51%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 1  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYYTESR 60
          MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEY+TESR
Sbjct: 1  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR 60

Query: 61 QGIPLIT 68
          QGIPLIT
Sbjct: 61 QGIPLIT 67

[Close]

BLAST of MELO3C029495 vs. TAIR 10
Match: ATCG00580.1 (photosystem II reaction center protein E )

HSP 1 Score: 139.4 bits (350), Expect = 1.0e-33
Identity = 66/67 (98.51%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 1  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYYTESR 60
          MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEY+TESR
Sbjct: 1  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR 60

Query: 61 QGIPLIT 68
          QGIPLIT
Sbjct: 61 QGIPLIT 67

The following BLAST results are available for this feature:

BLAST of MELO3C029495 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_009427831.1	1.1e-29	98.51	photosystem II protein V [Circaeaster agrestis] >ASV47707.1 photosystem II prote...	[more]
YP_009993699.1	1.1e-29	98.51	photosystem II protein V [Phaleria macrocarpa] >AWI71761.1 photosystem II protei...	[more]
YP_009574933.1	1.1e-29	98.51	cytochrome b559 subunit alpha [Aristolochia macrophylla] >QBI76414.1 cytochrome ...	[more]
YP_009708662.1	1.1e-29	98.51	photosystem II protein V [Elytranthe albida] >QEV86271.1 photosystem II protein ...	[more]
YP_009417545.1	1.1e-29	98.51	photosystem II cytochrome b559 alpha subunit [Erythronium sibiricum] >AQD17403.1...	[more]

BLAST of MELO3C029495 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q3V518	1.5e-32	98.51	Cytochrome b559 subunit alpha OS=Acorus calamus OX=4465 GN=psbE PE=3 SV=1	[more]
A1EA25	1.5e-32	98.51	Cytochrome b559 subunit alpha OS=Agrostis stolonifera OX=63632 GN=psbE PE=3 SV=1	[more]
Q70XY9	1.5e-32	98.51	Cytochrome b559 subunit alpha OS=Amborella trichopoda OX=13333 GN=psbE PE=3 SV=3	[more]
P56779	1.5e-32	98.51	Cytochrome b559 subunit alpha OS=Arabidopsis thaliana OX=3702 GN=psbE PE=1 SV=4	[more]
P59702	1.5e-32	98.51	Cytochrome b559 subunit alpha OS=Atropa belladonna OX=33113 GN=psbE PE=3 SV=3	[more]

BLAST of MELO3C029495 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A218LS32	5.4e-30	98.51	Cytochrome b559 subunit alpha OS=Elymus tauri OX=417392 GN=psbE PE=3 SV=1	[more]
A0A1W5HYY9	5.4e-30	98.51	Cytochrome b559 subunit alpha OS=Oryza grandiglumis OX=29690 GN=psbE PE=3 SV=1	[more]
A0A343UJT0	5.4e-30	98.51	Cytochrome b559 subunit alpha OS=Asarum sieboldii OX=76098 GN=psbE PE=3 SV=1	[more]
F1KLD9	5.4e-30	98.51	Cytochrome b559 subunit alpha OS=Fragaria vesca subsp. vesca OX=101020 GN=psbE P...	[more]
A0A1Y0AS34	5.4e-30	98.51	Cytochrome b559 subunit alpha OS=Polytoca digitata OX=798336 GN=psbE PE=3 SV=1	[more]

BLAST of MELO3C029495 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00580.1	1.0e-33	98.51	photosystem II reaction center protein E	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR037025	Photosystem II cytochrome b559, alpha subunit superfamily	GENE3D	1.20.5.860	Photosystem II cytochrome b559, alpha subunit	coord: 1..67 e-value: 3.2E-41 score: 141.0
IPR006217	Photosystem II cytochrome b559, alpha subunit	TIGRFAM	TIGR01332	TIGR01332	coord: 2..67 e-value: 3.0E-42 score: 140.5
IPR006217	Photosystem II cytochrome b559, alpha subunit	PIRSF	PIRSF000036	Cytochrome_PsbE	coord: 1..67 e-value: 4.1E-45 score: 149.5
IPR013081	Photosystem II cytochrome b559, N-terminal	PFAM	PF00283	Cytochrom_B559	coord: 6..34 e-value: 9.0E-16 score: 57.0
IPR013082	Photosystem II cytochrome b559, alpha subunit, lumenal region	PFAM	PF00284	Cytochrom_B559a	coord: 42..67 e-value: 1.0E-14 score: 54.0
None	No IPR available	PANTHER	PTHR33391	CYTOCHROME B559 SUBUNIT BETA-RELATED	coord: 1..67
None	No IPR available	PANTHER	PTHR33391:SF15	CYTOCHROME B559 SUBUNIT ALPHA	coord: 1..67
None	No IPR available	SUPERFAMILY	161045	Cytochrome b559 subunits	coord: 3..67
IPR006216	Photosystem II cytochrome b559, conserved site	PROSITE	PS00537	CYTOCHROME_B559	coord: 14..28

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C029495.1	MELO3C029495.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
biological_process	GO:0019684	photosynthesis, light reaction
biological_process	GO:0009767	photosynthetic electron transport chain
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0009539	photosystem II reaction center
molecular_function	GO:0020037	heme binding
molecular_function	GO:0046872	metal ion binding