MELO3C029478 (gene) Melon (DHL92) v4

Overview


Name	MELO3C029478
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Unknown protein
Location	chr01: 4912555 .. 4912752 (+)
RNA-Seq Expression	MELO3C029478
Synteny	MELO3C029478

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAGCGAAACACCCAGCCGCAAAAATGGAACCTCGAGCGGCAAGGAGGGAGATTTGAGGGGATTTGATGAGGGAGAACACAGAACGAAATGGTTTCGCATGAACACGAGTTGAGGGAAAAGCCTGAACACGGGTTGAAGACGATAAGGCAGGGGAGGGTTTCGCCCGTTTGATGGGAGAATGAAACTGTGTTAA

mRNA sequence

ATGGCAAGCGAAACACCCAGCCGCAAAAATGGAACCTCGAGCGGCAAGGAGGGAGATTTGAGGGGATTTGATGAGGGAGAACACAGAACGAAATGGTTTCGCATGAACACGAGTTGAGGGAAAAGCCTGAACACGGGTTGAAGACGATAAGGCAGGGGAGGGTTTCGCCCGTTTGATGGGAGAATGAAACTGTGTTAA

Coding sequence (CDS)

ATGGCAAGCGAAACACCCAGCCGCAAAAATGGAACCTCGAGCGGCAAGGAGGGAGATTTGAGGGGATTTGATGAGGGAGAACACAGAACGAAATGGTTTCGCATGAACACGAGTTGA

Protein sequence

MASETPSRKNGTSSGKEGDLRGFDEGEHRTKWFRMNTS

Homology

[Close]

BLAST of MELO3C029478 vs. NCBI nr
Match: TYK28155.1 (hypothetical protein E5676_scaffold289G00690 [Cucumis melo var. makuwa])

HSP 1 Score: 58.9 bits (141), Expect = 1.1e-05
Identity = 29/35 (82.86%), Postives = 30/35 (85.71%), Query Frame = 0


Query: 1  MASETPSRKNGTSSGKEGDLRGFDEGEHRTKWFRM 36
          MASETPSR NGTSSGKEGDLRGFDEGEH  K  R+
Sbjct: 1  MASETPSRNNGTSSGKEGDLRGFDEGEHTMKGKRV 35

[Close]

BLAST of MELO3C029478 vs. NCBI nr
Match: TYK01078.1 (hypothetical protein E5676_scaffold264G00950 [Cucumis melo var. makuwa])

HSP 1 Score: 58.5 bits (140), Expect = 1.4e-05
Identity = 29/36 (80.56%), Postives = 31/36 (86.11%), Query Frame = 0


Query: 1  MASETPSRKNGTSSGKEGDLRGFDEGEHRTKWFRMN 37
          MASETPSR NGTSS KEGDLR FDEGEHRTK  R++
Sbjct: 1  MASETPSRNNGTSSAKEGDLRRFDEGEHRTKGKRVS 36

[Close]

BLAST of MELO3C029478 vs. NCBI nr
Match: KAA0047776.1 (hypothetical protein E6C27_scaffold133G00090 [Cucumis melo var. makuwa])

HSP 1 Score: 58.5 bits (140), Expect = 1.4e-05
Identity = 29/36 (80.56%), Postives = 31/36 (86.11%), Query Frame = 0


Query: 1  MASETPSRKNGTSSGKEGDLRGFDEGEHRTKWFRMN 37
          MASETPSR NGTSS KEGDLR FDEGEHRTK  R++
Sbjct: 1  MASETPSRNNGTSSAKEGDLRRFDEGEHRTKGKRVS 36

[Close]

BLAST of MELO3C029478 vs. NCBI nr
Match: TYK04868.1 (hypothetical protein E5676_scaffold143G00590 [Cucumis melo var. makuwa])

HSP 1 Score: 57.8 bits (138), Expect = 2.4e-05
Identity = 28/36 (77.78%), Postives = 31/36 (86.11%), Query Frame = 0


Query: 1  MASETPSRKNGTSSGKEGDLRGFDEGEHRTKWFRMN 37
          MASETPS  NGTSS KEGDLRGFD+GEHRTK  R++
Sbjct: 1  MASETPSPNNGTSSNKEGDLRGFDDGEHRTKGKRVS 36

[Close]

BLAST of MELO3C029478 vs. NCBI nr
Match: KAA0061239.1 (hypothetical protein E6C27_scaffold455G00740 [Cucumis melo var. makuwa] >TYJ99958.1 hypothetical protein E5676_scaffold5168G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 57.8 bits (138), Expect = 2.4e-05
Identity = 28/31 (90.32%), Postives = 28/31 (90.32%), Query Frame = 0


Query: 1  MASETPSRKNGTSSGKEGDLRGFDEGEHRTK 32
          MASETPSR NGTSS KEGDLRGFDEGEHR K
Sbjct: 1  MASETPSRNNGTSSDKEGDLRGFDEGEHRMK 31

[Close]

BLAST of MELO3C029478 vs. ExPASy TrEMBL
Match: A0A5D3DXU4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold289G00690 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 5.2e-06
Identity = 29/35 (82.86%), Postives = 30/35 (85.71%), Query Frame = 0


Query: 1  MASETPSRKNGTSSGKEGDLRGFDEGEHRTKWFRM 36
          MASETPSR NGTSSGKEGDLRGFDEGEH  K  R+
Sbjct: 1  MASETPSRNNGTSSGKEGDLRGFDEGEHTMKGKRV 35

[Close]

BLAST of MELO3C029478 vs. ExPASy TrEMBL
Match: A0A5A7U0L7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G00090 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 6.8e-06
Identity = 29/36 (80.56%), Postives = 31/36 (86.11%), Query Frame = 0


Query: 1  MASETPSRKNGTSSGKEGDLRGFDEGEHRTKWFRMN 37
          MASETPSR NGTSS KEGDLR FDEGEHRTK  R++
Sbjct: 1  MASETPSRNNGTSSAKEGDLRRFDEGEHRTKGKRVS 36

[Close]

BLAST of MELO3C029478 vs. ExPASy TrEMBL
Match: A0A5D3BPU2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold264G00950 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 6.8e-06
Identity = 29/36 (80.56%), Postives = 31/36 (86.11%), Query Frame = 0


Query: 1  MASETPSRKNGTSSGKEGDLRGFDEGEHRTKWFRMN 37
          MASETPSR NGTSS KEGDLR FDEGEHRTK  R++
Sbjct: 1  MASETPSRNNGTSSAKEGDLRRFDEGEHRTKGKRVS 36

[Close]

BLAST of MELO3C029478 vs. ExPASy TrEMBL
Match: A0A5A7V6A8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold5168G00010 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.2e-05
Identity = 28/31 (90.32%), Postives = 28/31 (90.32%), Query Frame = 0


Query: 1  MASETPSRKNGTSSGKEGDLRGFDEGEHRTK 32
          MASETPSR NGTSS KEGDLRGFDEGEHR K
Sbjct: 1  MASETPSRNNGTSSDKEGDLRGFDEGEHRMK 31

[Close]

BLAST of MELO3C029478 vs. ExPASy TrEMBL
Match: A0A5D3C0R8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold143G00590 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.2e-05
Identity = 28/36 (77.78%), Postives = 31/36 (86.11%), Query Frame = 0


Query: 1  MASETPSRKNGTSSGKEGDLRGFDEGEHRTKWFRMN 37
          MASETPS  NGTSS KEGDLRGFD+GEHRTK  R++
Sbjct: 1  MASETPSPNNGTSSNKEGDLRGFDDGEHRTKGKRVS 36

The following BLAST results are available for this feature:

BLAST of MELO3C029478 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK28155.1	1.1e-05	82.86	hypothetical protein E5676_scaffold289G00690 [Cucumis melo var. makuwa]	[more]
TYK01078.1	1.4e-05	80.56	hypothetical protein E5676_scaffold264G00950 [Cucumis melo var. makuwa]	[more]
KAA0047776.1	1.4e-05	80.56	hypothetical protein E6C27_scaffold133G00090 [Cucumis melo var. makuwa]	[more]
TYK04868.1	2.4e-05	77.78	hypothetical protein E5676_scaffold143G00590 [Cucumis melo var. makuwa]	[more]
KAA0061239.1	2.4e-05	90.32	hypothetical protein E6C27_scaffold455G00740 [Cucumis melo var. makuwa] >TYJ9995...	[more]

BLAST of MELO3C029478 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C029478 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DXU4	5.2e-06	82.86	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7U0L7	6.8e-06	80.56	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3BPU2	6.8e-06	80.56	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7V6A8	1.2e-05	90.32	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3C0R8	1.2e-05	77.78	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of MELO3C029478 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..38
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 14..32

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C029478.1	MELO3C029478.1	mRNA