MELO3C029422 (gene) Melon (DHL92) v4

Overview
NameMELO3C029422
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionRetrotransposon protein
Locationchr02: 4061398 .. 4064052 (-)
RNA-Seq ExpressionMELO3C029422
SyntenyMELO3C029422
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAACCCCGTTTTGTCGTTCATCAAGCTGACTTCACTATCTGTGTCACTCATCCACATTGTCTAGCATCCACGGCACACCCTTTATTCATCTATTGTTGTTGTGCCACATCACACGTCGTTAACGAAGAGACCTCAGCCATGATGCCTTCAGTCACGACGTTGCTCACCGACGCCCAATTTGATCGTTGTCGCACCGTCCATCTAACCGATTGACAGCCACCCTATGTCGAACTCTTCACGGGTTACACAAATTTGAAGTCTTTAGGCTTGATTGAAGTCGTTCTACAAGCTGAATCACTGCCAACTTCCTTCTTTTCCAACTCCTTATCGTTAGATCTAAGTTTTGGGTAAATCTTCTTTATTTTAGTTGGATTTCTTGATGTGTTTCAATTACCCATTAAAATTCAACTTGGTTTTCACAATACCCATTACATTTTAATGCTAGATTTGAATATTAAAAGAGTTTGAGTCGCTGTCTAGCCATTCAAAAACTTGAAATTAGGCGTTTCGACACAACTTTGGTAAGTTTCTAAGTTTTTTGGAGCAGTTATTGAATACCCATTTGTTTCTAGTGTTAAAATTGAATAGCCCATGATGTTGAAAGCTAGATTTCGAAGTTAGAAGGTAGTATTGGTGCTGTCCATTGAAGTTTAGGTTACTTGGTTAACTTCTTGATAAGTTTTGGAGCAATTTTGTTGAGTTTTTCTAGAGTTCTTGAATGCCCATTAAGTTTAAGCGTTAAAACTGAATAGACCATGATGGTGGATGCTTGTTTTCGAAGTAGAAAGTCGATAGGATGTTGTTCATTAGGATTAAGGCTACTTTAATAATTGTTCGATAAGATTTTAGGTAATTTTAGTAAGTTTCGTGAATACCCATTTAGTTTTAGCATGAACTTGATTTTCCTCATATTTTTATGTATGAAAGATTGAAGATTTGAAGGACTTAGAAACATTGATCAAAATGTTTAAAGTCGTTTAGGACAAGTGTAGGTAATCTCTTAAGTTATATATTGACTTGTTAGTTTGGTTTTGAGATTGTTAATGGATCTAAACCTCTAAGGTACGGTATGGATATTGGGTATAAGAGCATATGGTTTTAAAGACGACTTAATCTTGTTTGTTTATGACGTTAGGAGTTTAAGTTGAAGTTTAAGGGCCCAAAAGTGAAATATTTAGCCTAAATTAAAGCATGTGGTGAATGATACCAATATACCACAATTATTTCTAAAATATTTAATCGTGATCACGATTAAATATTTTAGAGATAACTGTGGTATCTTGATATGCGAATATAACTAAGGGTCATTGATCGTTATTTCAGGTCAAATTGAAGTAGAAAAAGCGTATAACCCGAGGGATAGAGTTACTGATTGTGAGTGGCTTATTTTCAAGATTTCTTTATACTTATACATGTTGTCTCATGATATTGCTTGAAAACTACCATGATGTAAACTTTTTATGATCACATTTTTGTTTATGTTTAAACAATGTATTTACACATCGAAATTTTCAAAATGTTTATGACTCGAATTTTATAAAAGCGGGTTCAAGTTCCTATTTCATTTACACTTAAACAATGTGTTTGTTCATCACAGTTTTAAACATGCACATGGTTTGAACTCTATAAATTTGAGTTTCAAGTTTTGATTATACTTGGTTTGAAATATGTTTAACCGATATTTATGGTAAACGAGAAGGTGATTTTCCTAAGGCTACGTGAATGTGTTTCTGTAGTGCCACCTATGGTTGTTAGAGGATTTCGAGGCTGAAAGAGACCGTGATCGGAGATTCGGGAACCTGAATCTAGGTGAGGATGTGGATGGAGGATTGCGATGTGGCTTCGGGCCTAGCTTGACCCGTGGTGGATGGCTCTATGTGCACATAGGAGCGGTATGTTGTTATTGTGGTAGATGCCAAATATGCGTGAGCTTCGTCTGGCCGTGTGTTTTCTTATAGATGTAGATCACATGTGAGCTATTTTGGGCCGTGTATTTAGTATGCTATCATGGTTGGATTGGATTAGATAGATGTTATTACTGTGGTAGGTGCTAAGTATACGTGAGCTCCATTTTGTCGCGTGTTTTCTTGTGGATATGGAGCACCTGTGAGCTATTCCCAGTCGTATACTTAGTATGTTATCATGGTTGGATTGGATTGGTTGGAGGTTGATATCGTGGCGGATACTAAAGATGCATGAGCTAGTTTTGGTCGCATGACACTTTGTCATATGCGAGCTATCTTTAGCCCTATTTTTAGAAGTCTTGCCATTGTTGGATTGACTACAGGTTTGTTGGTGGACTAATGGCTATGAGTTAATGACGTTTTTAACTAATATTTCATTACGAATGCATATTTATAGATTTTCTATTTAAGCATGCTTTACGAGTTTTACTTCTAAGAAACTTGCCATTCACTAAGTTTTCAACTTACATTTTCATTGTTTTCTGCCTCTCCCCCTCCCCTCAAGTAGCGATCAAGGGCCAAGTGTTGGTTGAACTCTCATTATCGATTGTAGATCTCCATTATTCTTTTTGTATGTATATAGTTATCTTTTGTAATGAATCATGGAGTGGTTAGATGTAGCGAGAGTGAGGTTGTGAACTTGTGTTTGGGGAGATCTCTCATTAAATTGAAACTATTTTGTACGTAA

mRNA sequence

ATGCAACCCCGTTTTGTCGTTCATCAAGCTGACTTCACTATCTGTGTCACTCATCCACATTGTCTAGCATCCACGGCACACCCTTTATTCATCTATTGTTGTTGTGCCACATCACACGTCGTTAACGAAGAGACCTCAGCCATGATGCCTTCAGTCACGACGTTGCTCACCGACGCCCAATTTGATCGTTGTCGCACCAGTTTGAGTCGCTGTCTAGCCATTCAAAAACTTGAAATTAGGCGTTTCGACACAACTTTGTGCCACCTATGGTTGTTAGAGGATTTCGAGGCTGAAAGAGACCGTGATCGGAGATTCGGGAACCTGAATCTAGGTGAGGATGTGGATGGAGGATTGCGATGTGGCTTCGGGCCTAGCTTGACCCGTGGTGGATGGCTCTATGTGCACATAGGAGCGTTATCTTTTGTAATGAATCATGGAGTGGTTAGATGTAGCGAGAGTGAGGTTGTGAACTTGTGTTTGGGGAGATCTCTCATTAAATTGAAACTATTTTGTACGTAA

Coding sequence (CDS)

ATGCAACCCCGTTTTGTCGTTCATCAAGCTGACTTCACTATCTGTGTCACTCATCCACATTGTCTAGCATCCACGGCACACCCTTTATTCATCTATTGTTGTTGTGCCACATCACACGTCGTTAACGAAGAGACCTCAGCCATGATGCCTTCAGTCACGACGTTGCTCACCGACGCCCAATTTGATCGTTGTCGCACCAGTTTGAGTCGCTGTCTAGCCATTCAAAAACTTGAAATTAGGCGTTTCGACACAACTTTGTGCCACCTATGGTTGTTAGAGGATTTCGAGGCTGAAAGAGACCGTGATCGGAGATTCGGGAACCTGAATCTAGGTGAGGATGTGGATGGAGGATTGCGATGTGGCTTCGGGCCTAGCTTGACCCGTGGTGGATGGCTCTATGTGCACATAGGAGCGTTATCTTTTGTAATGAATCATGGAGTGGTTAGATGTAGCGAGAGTGAGGTTGTGAACTTGTGTTTGGGGAGATCTCTCATTAAATTGAAACTATTTTGTACGTAA

Protein sequence

MQPRFVVHQADFTICVTHPHCLASTAHPLFIYCCCATSHVVNEETSAMMPSVTTLLTDAQFDRCRTSLSRCLAIQKLEIRRFDTTLCHLWLLEDFEAERDRDRRFGNLNLGEDVDGGLRCGFGPSLTRGGWLYVHIGALSFVMNHGVVRCSESEVVNLCLGRSLIKLKLFCT
Homology
[Close]
BLAST of MELO3C029422 vs. NCBI nr
Match: XP_031740114.1 (uncharacterized protein LOC105435219 [Cucumis sativus])

HSP 1 Score: 87.4 bits (215), Expect = 1.3e-13
Identity = 46/70 (65.71%), Postives = 51/70 (72.86%), Query Frame = 0 

Query: 69  SRCLAIQKLEIRRFDTTLCHLWLLEDFEAERDRDRRFGNLNLGEDVDGGLRCGFGPSLTR 128
           S C A +KL I  F TT  +L L EDF AERDRD+R  NL+L ED+DGGLR GF PSLT 
Sbjct: 28  SCCPAFRKLGIGSFRTTWHYLRLSEDFGAERDRDQRSENLSLSEDMDGGLRYGFRPSLTH 87

Query: 129 GGWLYVHIGA 139
            GWLYVHIGA
Sbjct: 88  CGWLYVHIGA 97

[Close]
BLAST of MELO3C029422 vs. NCBI nr
Match: TYK25868.1 (hypothetical protein E5676_scaffold436G00840 [Cucumis melo var. makuwa])

HSP 1 Score: 78.6 bits (192), Expect = 6.0e-11
Identity = 36/51 (70.59%), Postives = 40/51 (78.43%), Query Frame = 0 

Query: 88  HLWLLEDFEAERDRDRRFGNLNLGEDVDGGLRCGFGPSLTRGGWLYVHIGA 139
           HLWLL D EA+R  +RR  NL+LGED+DGGLR G GPSL  G WLYVHIGA
Sbjct: 38  HLWLLGDSEAKRGHNRRSENLSLGEDMDGGLRYGIGPSLIHGAWLYVHIGA 88

[Close]
BLAST of MELO3C029422 vs. NCBI nr
Match: KAA0058838.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK11255.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 67.8 bits (164), Expect = 1.1e-07
Identity = 37/76 (48.68%), Postives = 49/76 (64.47%), Query Frame = 0 

Query: 89  LWLLEDFEAERDRDRRFGNLNLGEDVDGGLRCGFGPSLTRGGWLYVHIGA----LSFVMN 148
           L ++  F  ER  D R  NL+LGED+DGGLR GFGP+LT G WLYVHIGA    ++ V++
Sbjct: 22  LKVVSGFGTERGYDWRSENLSLGEDMDGGLRYGFGPNLTHGQWLYVHIGADMEIVTVVVS 81

Query: 149 HGVVRCSESEVVNLCL 161
             +   SE+ V  L +
Sbjct: 82  RYLAMASENIVTILTI 97

[Close]
BLAST of MELO3C029422 vs. ExPASy TrEMBL
Match: A0A5D3DQP8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold436G00840 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 2.9e-11
Identity = 36/51 (70.59%), Postives = 40/51 (78.43%), Query Frame = 0 

Query: 88  HLWLLEDFEAERDRDRRFGNLNLGEDVDGGLRCGFGPSLTRGGWLYVHIGA 139
           HLWLL D EA+R  +RR  NL+LGED+DGGLR G GPSL  G WLYVHIGA
Sbjct: 38  HLWLLGDSEAKRGHNRRSENLSLGEDMDGGLRYGIGPSLIHGAWLYVHIGA 88

[Close]
BLAST of MELO3C029422 vs. ExPASy TrEMBL
Match: A0A5A7UUF7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold227G001110 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 5.1e-08
Identity = 37/76 (48.68%), Postives = 49/76 (64.47%), Query Frame = 0 

Query: 89  LWLLEDFEAERDRDRRFGNLNLGEDVDGGLRCGFGPSLTRGGWLYVHIGA----LSFVMN 148
           L ++  F  ER  D R  NL+LGED+DGGLR GFGP+LT G WLYVHIGA    ++ V++
Sbjct: 22  LKVVSGFGTERGYDWRSENLSLGEDMDGGLRYGFGPNLTHGQWLYVHIGADMEIVTVVVS 81

Query: 149 HGVVRCSESEVVNLCL 161
             +   SE+ V  L +
Sbjct: 82  RYLAMASENIVTILTI 97

The following BLAST results are available for this feature:
BLAST of MELO3C029422 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_031740114.11.3e-1365.71uncharacterized protein LOC105435219 [Cucumis sativus][more]
TYK25868.16.0e-1170.59hypothetical protein E5676_scaffold436G00840 [Cucumis melo var. makuwa][more]
KAA0058838.11.1e-0748.68retrotransposon protein [Cucumis melo var. makuwa] >TYK11255.1 retrotransposon p... [more]
BLAST of MELO3C029422 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C029422 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3DQP82.9e-1170.59Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7UUF75.1e-0848.68Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of MELO3C029422 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C029422.1MELO3C029422.1mRNA