MELO3C029343 (gene) Melon (DHL92) v4

Overview
NameMELO3C029343
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionRep-A_N domain-containing protein
Locationchr02: 2372490 .. 2372879 (-)
RNA-Seq ExpressionMELO3C029343
SyntenyMELO3C029343
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACCGCCCCAAATATCGCCACCACCACCGCTCCGCCTGCCGCAATACTTAGCAAGAAGTTCTTCAACGAAGGCGACACTCCGGATCCGGCAGCCTCGGCAACCTCTGGGATCACCATCGACGCGGCCAGAGCAGCAGCCGTGATTCCAGCAACAGCCTTCTCCTTCAACGACGATCGAACGGCGACGATCCTTCCGTTGGAAATGGGAGCAGCAGCGATGGGCTTGCGGGACTTAAAAGAAGGCAATGGGTTGAAGAAAGCGTCGTTGGAGAGTGGTTTGTGGGTGGCGTGGGTGAATGGTAAGGCCATTGAAACAGCGGAAGTGGAAGCCATTGATGGGATGAAATGGATGGAGGTGAAGGGAATTGAGGATTTTGTGGAAAATTGA

mRNA sequence

ATGACCGCCCCAAATATCGCCACCACCACCGCTCCGCCTGCCGCAATACTTAGCAAGAAGTTCTTCAACGAAGGCGACACTCCGGATCCGGCAGCCTCGGCAACCTCTGGGATCACCATCGACGCGGCCAGAGCAGCAGCCGTGATTCCAGCAACAGCCTTCTCCTTCAACGACGATCGAACGGCGACGATCCTTCCGTTGGAAATGGGAGCAGCAGCGATGGGCTTGCGGGACTTAAAAGAAGGCAATGGGTTGAAGAAAGCGTCGTTGGAGAGTGGTTTGTGGGTGGCGTGGGTGAATGGTAAGGCCATTGAAACAGCGGAAGTGGAAGCCATTGATGGGATGAAATGGATGGAGGTGAAGGGAATTGAGGATTTTGTGGAAAATTGA

Coding sequence (CDS)

ATGACCGCCCCAAATATCGCCACCACCACCGCTCCGCCTGCCGCAATACTTAGCAAGAAGTTCTTCAACGAAGGCGACACTCCGGATCCGGCAGCCTCGGCAACCTCTGGGATCACCATCGACGCGGCCAGAGCAGCAGCCGTGATTCCAGCAACAGCCTTCTCCTTCAACGACGATCGAACGGCGACGATCCTTCCGTTGGAAATGGGAGCAGCAGCGATGGGCTTGCGGGACTTAAAAGAAGGCAATGGGTTGAAGAAAGCGTCGTTGGAGAGTGGTTTGTGGGTGGCGTGGGTGAATGGTAAGGCCATTGAAACAGCGGAAGTGGAAGCCATTGATGGGATGAAATGGATGGAGGTGAAGGGAATTGAGGATTTTGTGGAAAATTGA

Protein sequence

MTAPNIATTTAPPAAILSKKFFNEGDTPDPAASATSGITIDAARAAAVIPATAFSFNDDRTATILPLEMGAAAMGLRDLKEGNGLKKASLESGLWVAWVNGKAIETAEVEAIDGMKWMEVKGIEDFVEN
Homology
BLAST of MELO3C029343 vs. NCBI nr
Match: KAA0055792.1 (Replication protein A 70 kDa DNA-binding subunit [Cucumis melo var. makuwa] >TYK10043.1 Replication protein A 70 kDa DNA-binding subunit [Cucumis melo var. makuwa])

HSP 1 Score: 249.2 bits (635), Expect = 1.9e-62
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 0

Query: 1   MTAPNIATTTAPPAAILSKKFFNEGDTPDPAASATSGITIDAARAAAVIPATAFSFNDDR 60
           MTAPNIATTTAPPAAILSKKFFNEGDTPDPAASATSGITIDAARAAAVIPATAFSFNDDR
Sbjct: 1   MTAPNIATTTAPPAAILSKKFFNEGDTPDPAASATSGITIDAARAAAVIPATAFSFNDDR 60

Query: 61  TATILPLEMGAAAMGLRDLKEGNGLKKASLESGLWVAWVNGKAIETAEVEAIDGMKWMEV 120
           TATILPLEMGAAAMGLRDLKEGNGLKKASLESGLWVAWVNGKAIETAEVEAIDGMKWMEV
Sbjct: 61  TATILPLEMGAAAMGLRDLKEGNGLKKASLESGLWVAWVNGKAIETAEVEAIDGMKWMEV 120

Query: 121 KGIEDFVEN 130
           KGIEDFVEN
Sbjct: 121 KGIEDFVEN 129

BLAST of MELO3C029343 vs. NCBI nr
Match: KAG6590026.1 (hypothetical protein SDJN03_15449, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 152.5 bits (384), Expect = 2.4e-33
Identity = 84/111 (75.68%), Postives = 94/111 (84.68%), Query Frame = 0

Query: 6   IATTTAPPAAILSKKFFNEGDTPDPAASATSGITIDAARAAAVIPATAFSFNDDRTATIL 65
           +ATTT PPAA+LSKKFF++G+TP PAASATSGITIDA RAAAV P  AFSF DDRTAT L
Sbjct: 1   MATTTVPPAAMLSKKFFSDGETPGPAASATSGITIDAVRAAAVSPVMAFSFKDDRTATSL 60

Query: 66  PLEMGAAAMGLRDLKE---GNGLKKASLESGLWVAWVNGKAIETAEVEAID 114
           PL++GAAAM LRDL+E   GNGLKKA L+S LWVA VNG+A ET EVEAID
Sbjct: 61  PLDVGAAAMALRDLEEEEAGNGLKKAWLDSLLWVALVNGRASETVEVEAID 111

BLAST of MELO3C029343 vs. NCBI nr
Match: DAD44309.1 (TPA_asm: hypothetical protein HUJ06_002539 [Nelumbo nucifera])

HSP 1 Score: 114.8 bits (286), Expect = 5.6e-22
Identity = 70/114 (61.40%), Postives = 81/114 (71.05%), Query Frame = 0

Query: 1   MTAPNIATTTAPPAAILSKKFFNEGDTPDPAASATSGITIDAARAAAVIPATAFSFNDDR 60
           MTAP I  +T PPA +LSKKF  EG+ P PAASATSGIT++A RAAAV P TAFS +DDR
Sbjct: 1   MTAPTITPSTTPPATMLSKKFLREGEIPGPAASATSGITMEAVRAAAVNPVTAFSLSDDR 60

Query: 61  TATILPLEMGAAAMGLRDLKEGNGLKKASLESG--LWVAWVNGKAIETAEVEAI 113
           T +        A++ L DLK G GLKKAS   G  LW+A VNG AIETAEV+AI
Sbjct: 61  TWSFALALDEVASIALEDLK-GKGLKKASELGGSLLWLAEVNGVAIETAEVDAI 113

BLAST of MELO3C029343 vs. NCBI nr
Match: RXH74777.1 (hypothetical protein DVH24_029498 [Malus domestica])

HSP 1 Score: 104.8 bits (260), Expect = 5.8e-19
Identity = 71/115 (61.74%), Postives = 80/115 (69.57%), Query Frame = 0

Query: 2   TAPNIATTTAPPAAILSKKFFNEGDTPDPAASATSGITIDAARAAAVIPATAFSFNDDRT 61
           TAP I T T PPAAILSKKFF EG+TP+ AASATSGITI+A  AAAVIP TAFSFN+  T
Sbjct: 140 TAPMITTATTPPAAILSKKFFREGETPE-AASATSGITIEAVSAAAVIPVTAFSFNEALT 199

Query: 62  ATILPLEMGAA-AMGLRDLK-EGNGLKKASLESGL--WVAWVNGKAIETAEVEAI 113
            + LPL+  AA A     L   G+GLKK   E  +  WVA VNG AI TA V+AI
Sbjct: 200 RS-LPLDFDAAGASAFEGLSGSGSGLKKHPAEDWILFWVALVNGMAIVTAVVDAI 252

BLAST of MELO3C029343 vs. NCBI nr
Match: RXI06133.1 (hypothetical protein DVH24_018175 [Malus domestica])

HSP 1 Score: 102.4 bits (254), Expect = 2.9e-18
Identity = 67/113 (59.29%), Postives = 76/113 (67.26%), Query Frame = 0

Query: 2   TAPNIATTTAPPAAILSKKFFNEGDTPDPAASATSGITIDAARAAAVIPATAFSFNDDRT 61
           TAP I TTT PPAA+LSKKF  EG+TP+ AASATSGITI+A  AAAVIP TAFSF +  T
Sbjct: 193 TAPTITTTTTPPAAMLSKKFLREGETPE-AASATSGITIEAVSAAAVIPVTAFSFKEALT 252

Query: 62  ATILPLEMGAAAMGLRDLKEGNGLKKASLESGL--WVAWVNGKAIETAEVEAI 113
            + LPL+  AA     +   G GL K S E  +  WVA VNG AI TA V AI
Sbjct: 253 WS-LPLDFDAAGANAFEGLSGIGLNKLSAEDWILFWVALVNGMAIVTAAVAAI 303

BLAST of MELO3C029343 vs. ExPASy TrEMBL
Match: A0A5A7UIW0 (Replication protein A 70 kDa DNA-binding subunit OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G001760 PE=4 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 9.3e-63
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 0

Query: 1   MTAPNIATTTAPPAAILSKKFFNEGDTPDPAASATSGITIDAARAAAVIPATAFSFNDDR 60
           MTAPNIATTTAPPAAILSKKFFNEGDTPDPAASATSGITIDAARAAAVIPATAFSFNDDR
Sbjct: 1   MTAPNIATTTAPPAAILSKKFFNEGDTPDPAASATSGITIDAARAAAVIPATAFSFNDDR 60

Query: 61  TATILPLEMGAAAMGLRDLKEGNGLKKASLESGLWVAWVNGKAIETAEVEAIDGMKWMEV 120
           TATILPLEMGAAAMGLRDLKEGNGLKKASLESGLWVAWVNGKAIETAEVEAIDGMKWMEV
Sbjct: 61  TATILPLEMGAAAMGLRDLKEGNGLKKASLESGLWVAWVNGKAIETAEVEAIDGMKWMEV 120

Query: 121 KGIEDFVEN 130
           KGIEDFVEN
Sbjct: 121 KGIEDFVEN 129

BLAST of MELO3C029343 vs. ExPASy TrEMBL
Match: A0A498HYV1 (Rep-A_N domain-containing protein OS=Malus domestica OX=3750 GN=DVH24_029498 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 2.8e-19
Identity = 71/115 (61.74%), Postives = 80/115 (69.57%), Query Frame = 0

Query: 2   TAPNIATTTAPPAAILSKKFFNEGDTPDPAASATSGITIDAARAAAVIPATAFSFNDDRT 61
           TAP I T T PPAAILSKKFF EG+TP+ AASATSGITI+A  AAAVIP TAFSFN+  T
Sbjct: 140 TAPMITTATTPPAAILSKKFFREGETPE-AASATSGITIEAVSAAAVIPVTAFSFNEALT 199

Query: 62  ATILPLEMGAA-AMGLRDLK-EGNGLKKASLESGL--WVAWVNGKAIETAEVEAI 113
            + LPL+  AA A     L   G+GLKK   E  +  WVA VNG AI TA V+AI
Sbjct: 200 RS-LPLDFDAAGASAFEGLSGSGSGLKKHPAEDWILFWVALVNGMAIVTAVVDAI 252

BLAST of MELO3C029343 vs. ExPASy TrEMBL
Match: A0A498KLC5 (Rep-A_N domain-containing protein OS=Malus domestica OX=3750 GN=DVH24_018175 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 1.4e-18
Identity = 67/113 (59.29%), Postives = 76/113 (67.26%), Query Frame = 0

Query: 2   TAPNIATTTAPPAAILSKKFFNEGDTPDPAASATSGITIDAARAAAVIPATAFSFNDDRT 61
           TAP I TTT PPAA+LSKKF  EG+TP+ AASATSGITI+A  AAAVIP TAFSF +  T
Sbjct: 193 TAPTITTTTTPPAAMLSKKFLREGETPE-AASATSGITIEAVSAAAVIPVTAFSFKEALT 252

Query: 62  ATILPLEMGAAAMGLRDLKEGNGLKKASLESGL--WVAWVNGKAIETAEVEAI 113
            + LPL+  AA     +   G GL K S E  +  WVA VNG AI TA V AI
Sbjct: 253 WS-LPLDFDAAGANAFEGLSGIGLNKLSAEDWILFWVALVNGMAIVTAAVAAI 303

BLAST of MELO3C029343 vs. ExPASy TrEMBL
Match: A0A218WXK4 (Rep-A_N domain-containing protein OS=Punica granatum OX=22663 GN=CDL15_Pgr028923 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 1.3e-16
Identity = 66/116 (56.90%), Postives = 75/116 (64.66%), Query Frame = 0

Query: 1   MTAPNIATTTAPPAAILSKKFFNEGDTPDPAASATSGITIDAARAAAVIPATAFSFNDDR 60
           +TAP I  +T PPA IL +KF  EGDTPDPAASATSGITI+A RAAAV P  AFS  +  
Sbjct: 173 ITAPTITPSTTPPATILRRKFLREGDTPDPAASATSGITIEAVRAAAVSPVMAFSLREAL 232

Query: 61  TATILPLEMGAAAMGL-RDLKEGNGLKKASLESGLWV---AWVNGKAIETAEVEAI 113
           T+   P +  A   GL  D   G+GLKK S  +G      A VNG AIETAEVEAI
Sbjct: 233 TSN-FPPDFDAPTKGLFFDSLAGSGLKKHS--AGFLCAEEAVVNGIAIETAEVEAI 285

BLAST of MELO3C029343 vs. ExPASy TrEMBL
Match: A0A7J7G758 (Replication protein A subunit OS=Camellia sinensis OX=4442 GN=HYC85_026397 PE=3 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 5.5e-15
Identity = 57/112 (50.89%), Postives = 72/112 (64.29%), Query Frame = 0

Query: 2   TAPNIATTTAPPAAILSKKFFNEGDTPDPAASATSGITIDAARAAAVIPATAFSFNDDRT 61
           T P +  +T PPA +LSKKF  EG+TPDPAASATSGIT++A  AAAV P T FSF +  T
Sbjct: 596 TRPTMTVSTTPPATMLSKKFLREGETPDPAASATSGITMEAVIAAAVNPVTTFSFIEALT 655

Query: 62  ATILPLEMGAAAMGLRDLKEGNGLKKAS-LESGLWVAWVNGKAIETAEVEAI 113
           +    +        L  L  G+GLKKA+ L +  WVA V+G A + AEVEA+
Sbjct: 656 SNFPMVVFDPTTAALEGL-TGSGLKKAAELGNLFWVAEVSGVAAKIAEVEAM 706

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0055792.11.9e-62100.00Replication protein A 70 kDa DNA-binding subunit [Cucumis melo var. makuwa] >TYK... [more]
KAG6590026.12.4e-3375.68hypothetical protein SDJN03_15449, partial [Cucurbita argyrosperma subsp. sorori... [more]
DAD44309.15.6e-2261.40TPA_asm: hypothetical protein HUJ06_002539 [Nelumbo nucifera][more]
RXH74777.15.8e-1961.74hypothetical protein DVH24_029498 [Malus domestica][more]
RXI06133.12.9e-1859.29hypothetical protein DVH24_018175 [Malus domestica][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7UIW09.3e-63100.00Replication protein A 70 kDa DNA-binding subunit OS=Cucumis melo var. makuwa OX=... [more]
A0A498HYV12.8e-1961.74Rep-A_N domain-containing protein OS=Malus domestica OX=3750 GN=DVH24_029498 PE=... [more]
A0A498KLC51.4e-1859.29Rep-A_N domain-containing protein OS=Malus domestica OX=3750 GN=DVH24_018175 PE=... [more]
A0A218WXK41.3e-1656.90Rep-A_N domain-containing protein OS=Punica granatum OX=22663 GN=CDL15_Pgr028923... [more]
A0A7J7G7585.5e-1550.89Replication protein A subunit OS=Camellia sinensis OX=4442 GN=HYC85_026397 PE=3 ... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C029343.1MELO3C029343.1mRNA