MELO3C029336 (gene) Melon (DHL92) v4

Overview
NameMELO3C029336
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
Description50S ribosomal protein L15
Locationchr02: 6064765 .. 6064963 (-)
RNA-Seq ExpressionMELO3C029336
SyntenyMELO3C029336
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GAAGGCGGAACAAGGCGTCGTGCGGAAGAAGGCGTCGTGCGGAAGAAGGCGTTCTTGAGAATGGTAAGGCGGAAGAAGTGAGAAAATCGTGGAGAATATATTGGAGAGGGAGAAAATCACGCAGACGAATGGAGGAGGAGAAATTCGCGCCAGGATTGTTTTTAAAACAAGGGTAATATTGGAATATATTTTAAAAAAA

mRNA sequence

GAAGGCGGAACAAGGCGTCGTGCGGAAGAAGGCGTCGTGCGGAAGAAGGCGTTCTTGAGAATGGTAAGGCGGAAGAAGTGAGAAAATCGTGGAGAATATATTGGAGAGGGAGAAAATCACGCAGACGAATGGAGGAGGAGAAATTCGCGCCAGGATTGTTTTTAAAACAAGGGTAATATTGGAATATATTTTAAAAAAA

Coding sequence (CDS)

AGGCGGAACAAGGCGTCGTGCGGAAGAAGGCGTCGTGCGGAAGAAGGCGTTCTTGAGAATGGTAAGGCGGAAGAAGTGAGAAAATCGTGGAGAATATATTGGAGAGGGAGAAAATCACGCAGACGAATGGAGGAGGAGAAATTCGCGCCAGGATTGTTTTTAAAACAAGGGTAA

Protein sequence

RRNKASCGRRRRAEEGVLENGKAEEVRKSWRIYWRGRKSRRRMEEEKFAPGLFLKQG
Homology
BLAST of MELO3C029336 vs. NCBI nr
Match: KAA0034559.1 (50S ribosomal protein L15 [Cucumis melo var. makuwa] >TYK09112.1 50S ribosomal protein L15 [Cucumis melo var. makuwa])

HSP 1 Score: 114.4 bits (285), Expect = 3.3e-22
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0

Query: 1   RRNKASCGRRRRAEEGVLENGKAEEVRKSWRIYWRGRKSRRRMEEEKFAPGLFLKQG 58
           RRNKASCGRRRRAEEGVLENGKAEEVRKSWRIYWRGRKSRRRMEEEKFAPGLFLKQG
Sbjct: 48  RRNKASCGRRRRAEEGVLENGKAEEVRKSWRIYWRGRKSRRRMEEEKFAPGLFLKQG 104

BLAST of MELO3C029336 vs. NCBI nr
Match: KAA0025306.1 (hypothetical protein E6C27_scaffold541G001610 [Cucumis melo var. makuwa])

HSP 1 Score: 96.7 bits (239), Expect = 7.0e-17
Identity = 48/50 (96.00%), Postives = 48/50 (96.00%), Query Frame = 0

Query: 8   GRRRRAEEGVLENGKAEEVRKSWRIYWRGRKSRRRMEEEKFAPGLFLKQG 58
           GRRRRAEEGVLENGKAEE RKSWRIYWRGRKSRRRMEEEKFAPG FLKQG
Sbjct: 120 GRRRRAEEGVLENGKAEEGRKSWRIYWRGRKSRRRMEEEKFAPGFFLKQG 169

BLAST of MELO3C029336 vs. NCBI nr
Match: KAA0063229.1 (lon protease 2-like [Cucumis melo var. makuwa] >TYK13479.1 lon protease 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 78.6 bits (192), Expect = 2.0e-11
Identity = 43/52 (82.69%), Postives = 44/52 (84.62%), Query Frame = 0

Query: 8  GRRRRAEEGVL--ENGKAEEVRKSWRIYWRGRKSRRRMEEEKFAPGLFLKQG 58
          GRRRRA+EGVL  ENGK EE RKSWRIYWRGRKSRR MEEEKFA   FLKQG
Sbjct: 44 GRRRRAKEGVLNVENGKDEEGRKSWRIYWRGRKSRRGMEEEKFASVFFLKQG 95

BLAST of MELO3C029336 vs. NCBI nr
Match: KAA0046136.1 (hypothetical protein E6C27_scaffold157G00760 [Cucumis melo var. makuwa])

HSP 1 Score: 63.5 bits (153), Expect = 6.6e-07
Identity = 33/40 (82.50%), Postives = 34/40 (85.00%), Query Frame = 0

Query: 13 AEEGVL--ENGKAEEVRKSWRIYWRGRKSRRRMEEEKFAP 51
          AEEGVL  ENGK E+ RKSWRIYWRGRKSRR MEEEKF P
Sbjct: 14 AEEGVLNVENGKDEKGRKSWRIYWRGRKSRRGMEEEKFTP 53

BLAST of MELO3C029336 vs. ExPASy TrEMBL
Match: A0A5D3CCS9 (50S ribosomal protein L15 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G001030 PE=3 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.6e-22
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0

Query: 1   RRNKASCGRRRRAEEGVLENGKAEEVRKSWRIYWRGRKSRRRMEEEKFAPGLFLKQG 58
           RRNKASCGRRRRAEEGVLENGKAEEVRKSWRIYWRGRKSRRRMEEEKFAPGLFLKQG
Sbjct: 48  RRNKASCGRRRRAEEGVLENGKAEEVRKSWRIYWRGRKSRRRMEEEKFAPGLFLKQG 104

BLAST of MELO3C029336 vs. ExPASy TrEMBL
Match: A0A5A7SHI4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold541G001610 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 3.4e-17
Identity = 48/50 (96.00%), Postives = 48/50 (96.00%), Query Frame = 0

Query: 8   GRRRRAEEGVLENGKAEEVRKSWRIYWRGRKSRRRMEEEKFAPGLFLKQG 58
           GRRRRAEEGVLENGKAEE RKSWRIYWRGRKSRRRMEEEKFAPG FLKQG
Sbjct: 120 GRRRRAEEGVLENGKAEEGRKSWRIYWRGRKSRRRMEEEKFAPGFFLKQG 169

BLAST of MELO3C029336 vs. ExPASy TrEMBL
Match: A0A5D3CTI7 (Lon protease 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold556G00120 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 9.6e-12
Identity = 43/52 (82.69%), Postives = 44/52 (84.62%), Query Frame = 0

Query: 8  GRRRRAEEGVL--ENGKAEEVRKSWRIYWRGRKSRRRMEEEKFAPGLFLKQG 58
          GRRRRA+EGVL  ENGK EE RKSWRIYWRGRKSRR MEEEKFA   FLKQG
Sbjct: 44 GRRRRAKEGVLNVENGKDEEGRKSWRIYWRGRKSRRGMEEEKFASVFFLKQG 95

BLAST of MELO3C029336 vs. ExPASy TrEMBL
Match: A0A5A7TVG1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold157G00760 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 3.2e-07
Identity = 33/40 (82.50%), Postives = 34/40 (85.00%), Query Frame = 0

Query: 13 AEEGVL--ENGKAEEVRKSWRIYWRGRKSRRRMEEEKFAP 51
          AEEGVL  ENGK E+ RKSWRIYWRGRKSRR MEEEKF P
Sbjct: 14 AEEGVLNVENGKDEKGRKSWRIYWRGRKSRRGMEEEKFTP 53

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0034559.13.3e-22100.0050S ribosomal protein L15 [Cucumis melo var. makuwa] >TYK09112.1 50S ribosomal p... [more]
KAA0025306.17.0e-1796.00hypothetical protein E6C27_scaffold541G001610 [Cucumis melo var. makuwa][more]
KAA0063229.12.0e-1182.69lon protease 2-like [Cucumis melo var. makuwa] >TYK13479.1 lon protease 2-like [... [more]
KAA0046136.16.6e-0782.50hypothetical protein E6C27_scaffold157G00760 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3CCS91.6e-22100.0050S ribosomal protein L15 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo... [more]
A0A5A7SHI43.4e-1796.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3CTI79.6e-1282.69Lon protease 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold556G... [more]
A0A5A7TVG13.2e-0782.50Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C029336.1MELO3C029336.1mRNA