MELO3C029304 (gene) Melon (DHL92) v4

Overview
NameMELO3C029304
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
Descriptionprotochlorophyllide-dependent translocon component 52, chloroplastic-like
Locationchr02: 3100039 .. 3100549 (+)
RNA-Seq ExpressionMELO3C029304
SyntenyMELO3C029304
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACGTTCTGAAACTCTCTTCTAGTCCACTCCATTTCACTACCAAGCTGAGCAAATCTCAATTTCCCAAGCAATGTATGCAGATTCCTCTATTCCCTTCATCCTCTTTTTCATCGATTAACAGATCCAATCGAAGTTTCAAGCTCTGCGCAACCACCTTTTCAACGGAAGAAACTGGAAATCCGTTCGAGGTGGAGGCCCAGAGTGAACGACGATTTGATTGGTATGCGCAATGGTACCCGATCATGCCGATTTGTGACCTGGACAAGAGGGTGCCACAAGGGAAAACGGTAATGGGGATTGATGTGGTGGTGTGGTGGGATAAGAACGAGAGTGGATGGAAGGTGTTCGATGATTTGTGTCCGCATAGATTGGCTCCGTTGTCTGAAGGAAGGATTGATGAATGGGGGAGATTGCAATGTGTTCATCATGGTTGGTGCTTTAATGGCTCTGGTGATTGTAAGTTCATCCCTCAGGCGCCAGCGCCCCCCGACGGCCCTCCGGTACTGA

mRNA sequence

ATGGACGTTCTGAAACTCTCTTCTAGTCCACTCCATTTCACTACCAAGCTGAGCAAATCTCAATTTCCCAAGCAATGTATGCAGATTCCTCTATTCCCTTCATCCTCTTTTTCATCGATTAACAGATCCAATCGAAGTTTCAAGCTCTGCGCAACCACCTTTTCAACGGAAGAAACTGGAAATCCGTTCGAGGTGGAGGCCCAGAGTGAACGACGATTTGATTGGTATGCGCAATGGTACCCGATCATGCCGATTTGTGACCTGGACAAGAGGGTGCCACAAGGGAAAACGGTAATGGGGATTGATGTGGTGGTGTGGTGGGATAAGAACGAGAGTGGATGGAAGGTGTTCGATGATTTGTGTCCGCATAGATTGGCTCCGTTGTCTGAAGGAAGGATTGATGAATGGGGGAGATTGCAATGTGTTCATCATGGTTGGTGCTTTAATGGCTCTGGTGATTGTAAGTTCATCCCTCAGGCGCCAGCGCCCCCCGACGGCCCTCCGGTACTGA

Coding sequence (CDS)

ATGGACGTTCTGAAACTCTCTTCTAGTCCACTCCATTTCACTACCAAGCTGAGCAAATCTCAATTTCCCAAGCAATGTATGCAGATTCCTCTATTCCCTTCATCCTCTTTTTCATCGATTAACAGATCCAATCGAAGTTTCAAGCTCTGCGCAACCACCTTTTCAACGGAAGAAACTGGAAATCCGTTCGAGGTGGAGGCCCAGAGTGAACGACGATTTGATTGGTATGCGCAATGGTACCCGATCATGCCGATTTGTGACCTGGACAAGAGGGTGCCACAAGGGAAAACGGTAATGGGGATTGATGTGGTGGTGTGGTGGGATAAGAACGAGAGTGGATGGAAGGTGTTCGATGATTTGTGTCCGCATAGATTGGCTCCGTTGTCTGAAGGAAGGATTGATGAATGGGGGAGATTGCAATGTGTTCATCATGGTTGGTGCTTTAATGGCTCTGGTGATTGTAAGTTCATCCCTCAGGCGCCAGCGCCCCCCGACGGCCCTCCGGTACTG

Protein sequence

MDVLKLSSSPLHFTTKLSKSQFPKQCMQIPLFPSSSFSSINRSNRSFKLCATTFSTEETGNPFEVEAQSERRFDWYAQWYPIMPICDLDKRVPQGKTVMGIDVVVWWDKNESGWKVFDDLCPHRLAPLSEGRIDEWGRLQCVHHGWCFNGSGDCKFIPQAPAPPDGPPVL
Homology
BLAST of MELO3C029304 vs. NCBI nr
Match: XP_008451030.1 (PREDICTED: protochlorophyllide-dependent translocon component 52, chloroplastic-like [Cucumis melo])

HSP 1 Score: 371.7 bits (953), Expect = 3.4e-99
Identity = 169/169 (100.00%), Postives = 169/169 (100.00%), Query Frame = 0

Query: 1   MDVLKLSSSPLHFTTKLSKSQFPKQCMQIPLFPSSSFSSINRSNRSFKLCATTFSTEETG 60
           MDVLKLSSSPLHFTTKLSKSQFPKQCMQIPLFPSSSFSSINRSNRSFKLCATTFSTEETG
Sbjct: 3   MDVLKLSSSPLHFTTKLSKSQFPKQCMQIPLFPSSSFSSINRSNRSFKLCATTFSTEETG 62

Query: 61  NPFEVEAQSERRFDWYAQWYPIMPICDLDKRVPQGKTVMGIDVVVWWDKNESGWKVFDDL 120
           NPFEVEAQSERRFDWYAQWYPIMPICDLDKRVPQGKTVMGIDVVVWWDKNESGWKVFDDL
Sbjct: 63  NPFEVEAQSERRFDWYAQWYPIMPICDLDKRVPQGKTVMGIDVVVWWDKNESGWKVFDDL 122

Query: 121 CPHRLAPLSEGRIDEWGRLQCVHHGWCFNGSGDCKFIPQAPAPPDGPPV 170
           CPHRLAPLSEGRIDEWGRLQCVHHGWCFNGSGDCKFIPQAPAPPDGPPV
Sbjct: 123 CPHRLAPLSEGRIDEWGRLQCVHHGWCFNGSGDCKFIPQAPAPPDGPPV 171

BLAST of MELO3C029304 vs. NCBI nr
Match: KAA0055708.1 (protochlorophyllide-dependent translocon component 52 [Cucumis melo var. makuwa])

HSP 1 Score: 368.6 bits (945), Expect = 2.9e-98
Identity = 167/169 (98.82%), Postives = 168/169 (99.41%), Query Frame = 0

Query: 1   MDVLKLSSSPLHFTTKLSKSQFPKQCMQIPLFPSSSFSSINRSNRSFKLCATTFSTEETG 60
           MDVLKLSSSPLHFTTKLSKSQFPKQCMQIPLFPSSSFSSINRSNR FKLCATTFSTEETG
Sbjct: 3   MDVLKLSSSPLHFTTKLSKSQFPKQCMQIPLFPSSSFSSINRSNRRFKLCATTFSTEETG 62

Query: 61  NPFEVEAQSERRFDWYAQWYPIMPICDLDKRVPQGKTVMGIDVVVWWDKNESGWKVFDDL 120
           NPFEVEAQSERRFDWYAQWYPIMPICDLDKRVPQGKTVMGIDVVVWWDKNESGWKVFDDL
Sbjct: 63  NPFEVEAQSERRFDWYAQWYPIMPICDLDKRVPQGKTVMGIDVVVWWDKNESGWKVFDDL 122

Query: 121 CPHRLAPLSEGRIDEWGRLQCVHHGWCFNGSGDCKFIPQAPAPPDGPPV 170
           CPHRLAPLSEGRID+WGRLQCVHHGWCFNGSGDCKFIPQAPAPPDGPPV
Sbjct: 123 CPHRLAPLSEGRIDQWGRLQCVHHGWCFNGSGDCKFIPQAPAPPDGPPV 171

BLAST of MELO3C029304 vs. NCBI nr
Match: TYK09954.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 367.5 bits (942), Expect = 6.4e-98
Identity = 166/169 (98.22%), Postives = 168/169 (99.41%), Query Frame = 0

Query: 1   MDVLKLSSSPLHFTTKLSKSQFPKQCMQIPLFPSSSFSSINRSNRSFKLCATTFSTEETG 60
           MDVLKLSSSPLHFTTKLSKSQFPKQCMQIPLFPSSSFSSINRSNR FKLCATTFSTEETG
Sbjct: 3   MDVLKLSSSPLHFTTKLSKSQFPKQCMQIPLFPSSSFSSINRSNRRFKLCATTFSTEETG 62

Query: 61  NPFEVEAQSERRFDWYAQWYPIMPICDLDKRVPQGKTVMGIDVVVWWDKNESGWKVFDDL 120
           NPFEVEA+SERRFDWYAQWYPIMPICDLDKRVPQGKTVMGIDVVVWWDKNESGWKVFDDL
Sbjct: 63  NPFEVEAESERRFDWYAQWYPIMPICDLDKRVPQGKTVMGIDVVVWWDKNESGWKVFDDL 122

Query: 121 CPHRLAPLSEGRIDEWGRLQCVHHGWCFNGSGDCKFIPQAPAPPDGPPV 170
           CPHRLAPLSEGRID+WGRLQCVHHGWCFNGSGDCKFIPQAPAPPDGPPV
Sbjct: 123 CPHRLAPLSEGRIDQWGRLQCVHHGWCFNGSGDCKFIPQAPAPPDGPPV 171

BLAST of MELO3C029304 vs. NCBI nr
Match: XP_004144089.2 (protochlorophyllide-dependent translocon component 52, chloroplastic [Cucumis sativus] >KGN66373.1 hypothetical protein Csa_007214 [Cucumis sativus])

HSP 1 Score: 324.7 bits (831), Expect = 4.7e-85
Identity = 154/170 (90.59%), Postives = 157/170 (92.35%), Query Frame = 0

Query: 1   MDVLKLSSSPLHFTTKLSKSQFPKQCMQIPLFPSSSFSSINRSNRSFKLCATTFSTEETG 60
           MDVLKLSSSPLHFTTKLSKSQ PKQCMQI LFPSSSFS INR NR FKLCATTFSTEE G
Sbjct: 1   MDVLKLSSSPLHFTTKLSKSQRPKQCMQILLFPSSSFSLINRPNRGFKLCATTFSTEEIG 60

Query: 61  NPFE-VEAQSERRFDWYAQWYPIMPICDLDKRVPQGKTVMGIDVVVWWDKNESGWKVFDD 120
           NP E VEA+SE RFDWYAQWYPIMPICDLDKRVP GK VMGIDVVVWWDKNESGWKVFDD
Sbjct: 61  NPLEAVEAESE-RFDWYAQWYPIMPICDLDKRVPHGKRVMGIDVVVWWDKNESGWKVFDD 120

Query: 121 LCPHRLAPLSEGRIDEWGRLQCVHHGWCFNGSGDCKFIPQAPAPPDGPPV 170
           LCPHRLAPLSEGRID+WGRLQCV+HGWCFNGSGDCKFIPQ  APPDGPPV
Sbjct: 121 LCPHRLAPLSEGRIDQWGRLQCVYHGWCFNGSGDCKFIPQ--APPDGPPV 167

BLAST of MELO3C029304 vs. NCBI nr
Match: XP_038879956.1 (protochlorophyllide-dependent translocon component 52, chloroplastic-like isoform X2 [Benincasa hispida])

HSP 1 Score: 310.8 bits (795), Expect = 7.1e-81
Identity = 143/175 (81.71%), Postives = 157/175 (89.71%), Query Frame = 0

Query: 1   MDVLKLSSSPLHFTTKLSKSQFPKQCMQIPLFPSSSFSSINRSNRSFKLCA---TTFSTE 60
           M+VLK+SS+PLHFTTK++KSQFPKQC+QIPLF SS  SS+NR NR FKLCA   TT STE
Sbjct: 1   MNVLKISSAPLHFTTKVNKSQFPKQCLQIPLFSSSFSSSVNRRNRRFKLCASKSTTISTE 60

Query: 61  ETGNPFEVEAQSER---RFDWYAQWYPIMPICDLDKRVPQGKTVMGIDVVVWWDKNESGW 120
           E+ NPFEVEA+SE+   RFDWYAQWYPI+PICDLDK+VP GKTVMGID+VVWWDKNES W
Sbjct: 61  ESANPFEVEAESEQREERFDWYAQWYPILPICDLDKKVPHGKTVMGIDLVVWWDKNESAW 120

Query: 121 KVFDDLCPHRLAPLSEGRIDEWGRLQCVHHGWCFNGSGDCKFIPQAPAPPDGPPV 170
           KVFDDLCPHRLAPLSEGRID WGRLQCV+HGWCFNGSGDCKFIPQ  APPDGPPV
Sbjct: 121 KVFDDLCPHRLAPLSEGRIDRWGRLQCVYHGWCFNGSGDCKFIPQ--APPDGPPV 173

BLAST of MELO3C029304 vs. ExPASy Swiss-Prot
Match: Q8W496 (Protochlorophyllide-dependent translocon component 52, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PTC52 PE=2 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 2.7e-51
Identity = 93/147 (63.27%), Postives = 106/147 (72.11%), Query Frame = 0

Query: 30  PLFPSSSFSSINRSNRSFKLCA----TTFSTEETGNPFEVEAQSE---RRFDWYAQWYPI 89
           P  P S  S I R +  F        ++ +   T +P E EA  E    +FDWYA WYP+
Sbjct: 29  PSLPISPNSLITRKSSRFTTAVSSPPSSSAATSTNSPPEPEALFEPGSDKFDWYANWYPV 88

Query: 90  MPICDLDKRVPQGKTVMGIDVVVWWDKNESGWKVFDDLCPHRLAPLSEGRIDEWGRLQCV 149
           MPICDLDK+VP GK VMGID+VVWWD+NE  WKV DD CPHRLAPLS+GRID+WGRLQCV
Sbjct: 89  MPICDLDKKVPHGKKVMGIDLVVWWDRNEKQWKVMDDTCPHRLAPLSDGRIDQWGRLQCV 148

Query: 150 HHGWCFNGSGDCKFIPQAPAPPDGPPV 170
           +HGWCFNGSGDCK IPQ  APPDGPPV
Sbjct: 149 YHGWCFNGSGDCKLIPQ--APPDGPPV 173

BLAST of MELO3C029304 vs. ExPASy Swiss-Prot
Match: Q9FYC2 (Pheophorbide a oxygenase, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PAO PE=1 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 6.5e-29
Identity = 72/169 (42.60%), Postives = 90/169 (53.25%), Query Frame = 0

Query: 1   MDVLKLSSSPLHFTTKLSKS-QFPKQCMQIPLFPSSSFSSINRSNRSFKLCA-----TTF 60
           M V+ LSS+    T   SK   F     + PL  S S S     +   ++ A     T+ 
Sbjct: 1   MSVVLLSSTSATITKSQSKKIPFLSPTTKFPLKVSISPSRSKLFHNPLRVAAPPSVPTSD 60

Query: 61  STEETGNPFEVEAQSER---RFDWYAQWYPIMPICDLDKRVPQGKTVMGIDVVVWWDKNE 120
           STEE     E     E     F W   WYP+  + DLD  VP    ++G D+V+W+D+N+
Sbjct: 61  STEEKRIEEEYGGDKEEEGSEFKWRDHWYPVSLVEDLDPNVPTPFQLLGRDLVLWFDRND 120

Query: 121 SGWKVFDDLCPHRLAPLSEGRIDEWGRLQCVHHGWCFNGSGDCKFIPQA 161
             W  FDDLCPHRLAPLSEGR+DE G LQC +HGW F G G C  IPQA
Sbjct: 121 QKWAAFDDLCPHRLAPLSEGRLDENGHLQCSYHGWSFGGCGSCTRIPQA 169

BLAST of MELO3C029304 vs. ExPASy Swiss-Prot
Match: Q0DV66 (Pheophorbide a oxygenase, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=PAO PE=2 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 8.8e-26
Identity = 51/101 (50.50%), Postives = 64/101 (63.37%), Query Frame = 0

Query: 67  AQSERRFDWYAQWYPIMPICDLDKRVPQGKTVMGIDVVVWWDKNESGWKVFDDLCPHRLA 126
           + ++ +F W   WYP+  + DLD  VP    ++  D+V+W D     W   DD CPHRLA
Sbjct: 70  SSADEKFVWRDHWYPVSLVEDLDPSVPTPFQLLNRDLVIWKDPKSGEWVALDDRCPHRLA 129

Query: 127 PLSEGRIDEWGRLQCVHHGWCFNGSGDCKFIPQAPAPPDGP 168
           PLSEGRIDE G LQC +HGW F+GSG C  IPQ  A P+GP
Sbjct: 130 PLSEGRIDETGCLQCSYHGWSFDGSGACTRIPQ--AAPEGP 168

BLAST of MELO3C029304 vs. ExPASy Swiss-Prot
Match: Q9SK50 (Protein TIC 55, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TIC55 PE=1 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 4.0e-18
Identity = 42/102 (41.18%), Postives = 61/102 (59.80%), Query Frame = 0

Query: 61  NPFEVEAQSERRFDWYAQWYPIMPICDLDKRVPQGKTVMGIDVVVWWDKNESGWKVFDDL 120
           NP E +      +DW  +WYP+    ++ +  P G TV    +V++ D  E   + ++D 
Sbjct: 70  NPEEEKRVEVADYDWTEEWYPLYLTKNVPEDAPLGLTVYDRQIVLYKD-GEGTLRCYEDR 129

Query: 121 CPHRLAPLSEGRIDEWGRLQCVHHGWCFNGSGDCKFIPQAPA 163
           CPHRLA LSEG++ + GRL+C++HGW F G G C  IPQ PA
Sbjct: 130 CPHRLAKLSEGQLID-GRLECLYHGWQFEGEGKCVKIPQLPA 169

BLAST of MELO3C029304 vs. ExPASy Swiss-Prot
Match: O49931 (Protein TIC 55, chloroplastic OS=Pisum sativum OX=3888 GN=TIC55 PE=1 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.2e-17
Identity = 43/106 (40.57%), Postives = 64/106 (60.38%), Query Frame = 0

Query: 60  GNPFEVEAQSERR---FDWYAQWYPIMPICDLDKRVPQGKTVMGIDVVVWWDKNESGWKV 119
           G   E E + ER    +DW  +WYP+    ++    P G  V   ++V++ D N+  ++ 
Sbjct: 81  GPSSEQERKGEREVADYDWTEEWYPLYLTKNVPHDAPLGLKVYDKNIVLFRDGNDQ-FQC 140

Query: 120 FDDLCPHRLAPLSEGRIDEWGRLQCVHHGWCFNGSGDCKFIPQAPA 163
           ++D CPHRLA LSEG++ + GRL+C++HGW F G G C  IPQ PA
Sbjct: 141 YEDRCPHRLAKLSEGQLID-GRLECLYHGWQFEGEGKCVKIPQLPA 184

BLAST of MELO3C029304 vs. ExPASy TrEMBL
Match: A0A1S3BQK3 (protochlorophyllide-dependent translocon component 52, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103492436 PE=4 SV=1)

HSP 1 Score: 371.7 bits (953), Expect = 1.6e-99
Identity = 169/169 (100.00%), Postives = 169/169 (100.00%), Query Frame = 0

Query: 1   MDVLKLSSSPLHFTTKLSKSQFPKQCMQIPLFPSSSFSSINRSNRSFKLCATTFSTEETG 60
           MDVLKLSSSPLHFTTKLSKSQFPKQCMQIPLFPSSSFSSINRSNRSFKLCATTFSTEETG
Sbjct: 3   MDVLKLSSSPLHFTTKLSKSQFPKQCMQIPLFPSSSFSSINRSNRSFKLCATTFSTEETG 62

Query: 61  NPFEVEAQSERRFDWYAQWYPIMPICDLDKRVPQGKTVMGIDVVVWWDKNESGWKVFDDL 120
           NPFEVEAQSERRFDWYAQWYPIMPICDLDKRVPQGKTVMGIDVVVWWDKNESGWKVFDDL
Sbjct: 63  NPFEVEAQSERRFDWYAQWYPIMPICDLDKRVPQGKTVMGIDVVVWWDKNESGWKVFDDL 122

Query: 121 CPHRLAPLSEGRIDEWGRLQCVHHGWCFNGSGDCKFIPQAPAPPDGPPV 170
           CPHRLAPLSEGRIDEWGRLQCVHHGWCFNGSGDCKFIPQAPAPPDGPPV
Sbjct: 123 CPHRLAPLSEGRIDEWGRLQCVHHGWCFNGSGDCKFIPQAPAPPDGPPV 171

BLAST of MELO3C029304 vs. ExPASy TrEMBL
Match: A0A5A7UKW4 (Protochlorophyllide-dependent translocon component 52 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold181G00900 PE=4 SV=1)

HSP 1 Score: 368.6 bits (945), Expect = 1.4e-98
Identity = 167/169 (98.82%), Postives = 168/169 (99.41%), Query Frame = 0

Query: 1   MDVLKLSSSPLHFTTKLSKSQFPKQCMQIPLFPSSSFSSINRSNRSFKLCATTFSTEETG 60
           MDVLKLSSSPLHFTTKLSKSQFPKQCMQIPLFPSSSFSSINRSNR FKLCATTFSTEETG
Sbjct: 3   MDVLKLSSSPLHFTTKLSKSQFPKQCMQIPLFPSSSFSSINRSNRRFKLCATTFSTEETG 62

Query: 61  NPFEVEAQSERRFDWYAQWYPIMPICDLDKRVPQGKTVMGIDVVVWWDKNESGWKVFDDL 120
           NPFEVEAQSERRFDWYAQWYPIMPICDLDKRVPQGKTVMGIDVVVWWDKNESGWKVFDDL
Sbjct: 63  NPFEVEAQSERRFDWYAQWYPIMPICDLDKRVPQGKTVMGIDVVVWWDKNESGWKVFDDL 122

Query: 121 CPHRLAPLSEGRIDEWGRLQCVHHGWCFNGSGDCKFIPQAPAPPDGPPV 170
           CPHRLAPLSEGRID+WGRLQCVHHGWCFNGSGDCKFIPQAPAPPDGPPV
Sbjct: 123 CPHRLAPLSEGRIDQWGRLQCVHHGWCFNGSGDCKFIPQAPAPPDGPPV 171

BLAST of MELO3C029304 vs. ExPASy TrEMBL
Match: A0A5D3CFG5 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G00830 PE=4 SV=1)

HSP 1 Score: 367.5 bits (942), Expect = 3.1e-98
Identity = 166/169 (98.22%), Postives = 168/169 (99.41%), Query Frame = 0

Query: 1   MDVLKLSSSPLHFTTKLSKSQFPKQCMQIPLFPSSSFSSINRSNRSFKLCATTFSTEETG 60
           MDVLKLSSSPLHFTTKLSKSQFPKQCMQIPLFPSSSFSSINRSNR FKLCATTFSTEETG
Sbjct: 3   MDVLKLSSSPLHFTTKLSKSQFPKQCMQIPLFPSSSFSSINRSNRRFKLCATTFSTEETG 62

Query: 61  NPFEVEAQSERRFDWYAQWYPIMPICDLDKRVPQGKTVMGIDVVVWWDKNESGWKVFDDL 120
           NPFEVEA+SERRFDWYAQWYPIMPICDLDKRVPQGKTVMGIDVVVWWDKNESGWKVFDDL
Sbjct: 63  NPFEVEAESERRFDWYAQWYPIMPICDLDKRVPQGKTVMGIDVVVWWDKNESGWKVFDDL 122

Query: 121 CPHRLAPLSEGRIDEWGRLQCVHHGWCFNGSGDCKFIPQAPAPPDGPPV 170
           CPHRLAPLSEGRID+WGRLQCVHHGWCFNGSGDCKFIPQAPAPPDGPPV
Sbjct: 123 CPHRLAPLSEGRIDQWGRLQCVHHGWCFNGSGDCKFIPQAPAPPDGPPV 171

BLAST of MELO3C029304 vs. ExPASy TrEMBL
Match: A0A0A0LX68 (Rieske domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G600130 PE=4 SV=1)

HSP 1 Score: 324.7 bits (831), Expect = 2.3e-85
Identity = 154/170 (90.59%), Postives = 157/170 (92.35%), Query Frame = 0

Query: 1   MDVLKLSSSPLHFTTKLSKSQFPKQCMQIPLFPSSSFSSINRSNRSFKLCATTFSTEETG 60
           MDVLKLSSSPLHFTTKLSKSQ PKQCMQI LFPSSSFS INR NR FKLCATTFSTEE G
Sbjct: 1   MDVLKLSSSPLHFTTKLSKSQRPKQCMQILLFPSSSFSLINRPNRGFKLCATTFSTEEIG 60

Query: 61  NPFE-VEAQSERRFDWYAQWYPIMPICDLDKRVPQGKTVMGIDVVVWWDKNESGWKVFDD 120
           NP E VEA+SE RFDWYAQWYPIMPICDLDKRVP GK VMGIDVVVWWDKNESGWKVFDD
Sbjct: 61  NPLEAVEAESE-RFDWYAQWYPIMPICDLDKRVPHGKRVMGIDVVVWWDKNESGWKVFDD 120

Query: 121 LCPHRLAPLSEGRIDEWGRLQCVHHGWCFNGSGDCKFIPQAPAPPDGPPV 170
           LCPHRLAPLSEGRID+WGRLQCV+HGWCFNGSGDCKFIPQ  APPDGPPV
Sbjct: 121 LCPHRLAPLSEGRIDQWGRLQCVYHGWCFNGSGDCKFIPQ--APPDGPPV 167

BLAST of MELO3C029304 vs. ExPASy TrEMBL
Match: A0A0A0LZA2 (Rieske domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G600140 PE=4 SV=1)

HSP 1 Score: 308.5 bits (789), Expect = 1.7e-80
Identity = 143/175 (81.71%), Postives = 154/175 (88.00%), Query Frame = 0

Query: 1   MDVLKLSSSPLHFTTKLSKSQFPKQCMQIPLFPSSSFSSINRSNRSFKLCA---TTFSTE 60
           MDVLKLSSSPLHFT+K +K QFP QC+QIPLFPSSS SSINR N  F LCA   +T ST+
Sbjct: 1   MDVLKLSSSPLHFTSKFNKPQFPNQCLQIPLFPSSSSSSINRRNPIFNLCAITSSTISTQ 60

Query: 61  ETGNPFEVEAQS---ERRFDWYAQWYPIMPICDLDKRVPQGKTVMGIDVVVWWDKNESGW 120
           E+ NPF+V+A+S   E RFDWYAQWYPIMPICDLDKRVP GKTVMGIDVVVWWDKNES W
Sbjct: 61  ESANPFQVDAESEPGEERFDWYAQWYPIMPICDLDKRVPHGKTVMGIDVVVWWDKNESAW 120

Query: 121 KVFDDLCPHRLAPLSEGRIDEWGRLQCVHHGWCFNGSGDCKFIPQAPAPPDGPPV 170
           KVFDDLCPHRLAPLSEGRID+WGRLQCV+HGWCFNGSGDCKFIPQ  APPDGPPV
Sbjct: 121 KVFDDLCPHRLAPLSEGRIDQWGRLQCVYHGWCFNGSGDCKFIPQ--APPDGPPV 173

BLAST of MELO3C029304 vs. TAIR 10
Match: AT4G25650.1 (ACD1-like )

HSP 1 Score: 203.0 bits (515), Expect = 1.9e-52
Identity = 93/147 (63.27%), Postives = 106/147 (72.11%), Query Frame = 0

Query: 30  PLFPSSSFSSINRSNRSFKLCA----TTFSTEETGNPFEVEAQSE---RRFDWYAQWYPI 89
           P  P S  S I R +  F        ++ +   T +P E EA  E    +FDWYA WYP+
Sbjct: 29  PSLPISPNSLITRKSSRFTTAVSSPPSSSAATSTNSPPEPEALFEPGSDKFDWYANWYPV 88

Query: 90  MPICDLDKRVPQGKTVMGIDVVVWWDKNESGWKVFDDLCPHRLAPLSEGRIDEWGRLQCV 149
           MPICDLDK+VP GK VMGID+VVWWD+NE  WKV DD CPHRLAPLS+GRID+WGRLQCV
Sbjct: 89  MPICDLDKKVPHGKKVMGIDLVVWWDRNEKQWKVMDDTCPHRLAPLSDGRIDQWGRLQCV 148

Query: 150 HHGWCFNGSGDCKFIPQAPAPPDGPPV 170
           +HGWCFNGSGDCK IPQ  APPDGPPV
Sbjct: 149 YHGWCFNGSGDCKLIPQ--APPDGPPV 173

BLAST of MELO3C029304 vs. TAIR 10
Match: AT4G25650.2 (ACD1-like )

HSP 1 Score: 203.0 bits (515), Expect = 1.9e-52
Identity = 93/147 (63.27%), Postives = 106/147 (72.11%), Query Frame = 0

Query: 30  PLFPSSSFSSINRSNRSFKLCA----TTFSTEETGNPFEVEAQSE---RRFDWYAQWYPI 89
           P  P S  S I R +  F        ++ +   T +P E EA  E    +FDWYA WYP+
Sbjct: 29  PSLPISPNSLITRKSSRFTTAVSSPPSSSAATSTNSPPEPEALFEPGSDKFDWYANWYPV 88

Query: 90  MPICDLDKRVPQGKTVMGIDVVVWWDKNESGWKVFDDLCPHRLAPLSEGRIDEWGRLQCV 149
           MPICDLDK+VP GK VMGID+VVWWD+NE  WKV DD CPHRLAPLS+GRID+WGRLQCV
Sbjct: 89  MPICDLDKKVPHGKKVMGIDLVVWWDRNEKQWKVMDDTCPHRLAPLSDGRIDQWGRLQCV 148

Query: 150 HHGWCFNGSGDCKFIPQAPAPPDGPPV 170
           +HGWCFNGSGDCK IPQ  APPDGPPV
Sbjct: 149 YHGWCFNGSGDCKLIPQ--APPDGPPV 173

BLAST of MELO3C029304 vs. TAIR 10
Match: AT3G44880.1 (Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain )

HSP 1 Score: 128.6 bits (322), Expect = 4.6e-30
Identity = 72/169 (42.60%), Postives = 90/169 (53.25%), Query Frame = 0

Query: 1   MDVLKLSSSPLHFTTKLSKS-QFPKQCMQIPLFPSSSFSSINRSNRSFKLCA-----TTF 60
           M V+ LSS+    T   SK   F     + PL  S S S     +   ++ A     T+ 
Sbjct: 1   MSVVLLSSTSATITKSQSKKIPFLSPTTKFPLKVSISPSRSKLFHNPLRVAAPPSVPTSD 60

Query: 61  STEETGNPFEVEAQSER---RFDWYAQWYPIMPICDLDKRVPQGKTVMGIDVVVWWDKNE 120
           STEE     E     E     F W   WYP+  + DLD  VP    ++G D+V+W+D+N+
Sbjct: 61  STEEKRIEEEYGGDKEEEGSEFKWRDHWYPVSLVEDLDPNVPTPFQLLGRDLVLWFDRND 120

Query: 121 SGWKVFDDLCPHRLAPLSEGRIDEWGRLQCVHHGWCFNGSGDCKFIPQA 161
             W  FDDLCPHRLAPLSEGR+DE G LQC +HGW F G G C  IPQA
Sbjct: 121 QKWAAFDDLCPHRLAPLSEGRLDENGHLQCSYHGWSFGGCGSCTRIPQA 169

BLAST of MELO3C029304 vs. TAIR 10
Match: AT2G24820.1 (translocon at the inner envelope membrane of chloroplasts 55-II )

HSP 1 Score: 92.8 bits (229), Expect = 2.8e-19
Identity = 42/102 (41.18%), Postives = 61/102 (59.80%), Query Frame = 0

Query: 61  NPFEVEAQSERRFDWYAQWYPIMPICDLDKRVPQGKTVMGIDVVVWWDKNESGWKVFDDL 120
           NP E +      +DW  +WYP+    ++ +  P G TV    +V++ D  E   + ++D 
Sbjct: 70  NPEEEKRVEVADYDWTEEWYPLYLTKNVPEDAPLGLTVYDRQIVLYKD-GEGTLRCYEDR 129

Query: 121 CPHRLAPLSEGRIDEWGRLQCVHHGWCFNGSGDCKFIPQAPA 163
           CPHRLA LSEG++ + GRL+C++HGW F G G C  IPQ PA
Sbjct: 130 CPHRLAKLSEGQLID-GRLECLYHGWQFEGEGKCVKIPQLPA 169

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_008451030.13.4e-99100.00PREDICTED: protochlorophyllide-dependent translocon component 52, chloroplastic-... [more]
KAA0055708.12.9e-9898.82protochlorophyllide-dependent translocon component 52 [Cucumis melo var. makuwa][more]
TYK09954.16.4e-9898.22Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
XP_004144089.24.7e-8590.59protochlorophyllide-dependent translocon component 52, chloroplastic [Cucumis sa... [more]
XP_038879956.17.1e-8181.71protochlorophyllide-dependent translocon component 52, chloroplastic-like isofor... [more]
Match NameE-valueIdentityDescription
Q8W4962.7e-5163.27Protochlorophyllide-dependent translocon component 52, chloroplastic OS=Arabidop... [more]
Q9FYC26.5e-2942.60Pheophorbide a oxygenase, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PAO P... [more]
Q0DV668.8e-2650.50Pheophorbide a oxygenase, chloroplastic OS=Oryza sativa subsp. japonica OX=39947... [more]
Q9SK504.0e-1841.18Protein TIC 55, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TIC55 PE=1 SV=1[more]
O499311.2e-1740.57Protein TIC 55, chloroplastic OS=Pisum sativum OX=3888 GN=TIC55 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
A0A1S3BQK31.6e-99100.00protochlorophyllide-dependent translocon component 52, chloroplastic-like OS=Cuc... [more]
A0A5A7UKW41.4e-9898.82Protochlorophyllide-dependent translocon component 52 OS=Cucumis melo var. makuw... [more]
A0A5D3CFG53.1e-9898.22Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A0A0LX682.3e-8590.59Rieske domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G600130 PE=4... [more]
A0A0A0LZA21.7e-8081.71Rieske domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G600140 PE=4... [more]
Match NameE-valueIdentityDescription
AT4G25650.11.9e-5263.27ACD1-like [more]
AT4G25650.21.9e-5263.27ACD1-like [more]
AT3G44880.14.6e-3042.60Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain [more]
AT2G24820.12.8e-1941.18translocon at the inner envelope membrane of chloroplasts 55-II [more]
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR017941Rieske [2Fe-2S] iron-sulphur domainPFAMPF00355Rieskecoord: 78..160
e-value: 1.5E-17
score: 63.3
IPR017941Rieske [2Fe-2S] iron-sulphur domainPROSITEPS51296RIESKEcoord: 79..170
score: 25.6894
IPR036922Rieske [2Fe-2S] iron-sulphur domain superfamilyGENE3D2.102.10.10coord: 74..169
e-value: 3.7E-29
score: 103.0
IPR036922Rieske [2Fe-2S] iron-sulphur domain superfamilySUPERFAMILY50022ISP domaincoord: 68..162
NoneNo IPR availablePANTHERPTHR21266IRON-SULFUR DOMAIN CONTAINING PROTEINcoord: 43..163
NoneNo IPR availablePANTHERPTHR21266:SF32NEVERLANDcoord: 43..163

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C029304.1MELO3C029304.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0051537 2 iron, 2 sulfur cluster binding