MELO3C029271 (gene) Melon (DHL92) v4

Overview
NameMELO3C029271
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionUnknown protein
Locationchr01: 35449966 .. 35450292 (-)
RNA-Seq ExpressionMELO3C029271
SyntenyMELO3C029271
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTAGCGTCTTCGCGACCTAGAAGTTTCACCGGCGTACCGGATCTCGGAGAAACCAAACAACTCTCCGACAATTCATCGAGGCCCAAAATCTTGCCCGGCCACCACGACCCATTTCGGCGGCGGACCCAAACTAACCCTCCAACCGATGAATCTATACCCTTGGCCTCGCTAGAACTTCCCATCTCCAAAACCCCCAGAACCCAAAGACCAGGGGAAAGAATTCCTCGAATGAACAACCCCTTAGCTGTTCATCTTGAAGCGCAATCAGTAGTGATTAAAACCGTAAAAAACCTTGCTTTCACCGACAAATGCATACACCCCTAA

mRNA sequence

ATGCTAGCGTCTTCGCGACCTAGAAGTTTCACCGGCGTACCGGATCTCGGAGAAACCAAACAACTCTCCGACAATTCATCGAGGCCCAAAATCTTGCCCGGCCACCACGACCCATTTCGGCGGCGGACCCAAACTAACCCTCCAACCGATGAATCTATACCCTTGGCCTCGCTAGAACTTCCCATCTCCAAAACCCCCAGAACCCAAAGACCAGGGGAAAGAATTCCTCGAATGAACAACCCCTTAGCTGTTCATCTTGAAGCGCAATCAGTAGTGATTAAAACCGTAAAAAACCTTGCTTTCACCGACAAATGCATACACCCCTAA

Coding sequence (CDS)

ATGCTAGCGTCTTCGCGACCTAGAAGTTTCACCGGCGTACCGGATCTCGGAGAAACCAAACAACTCTCCGACAATTCATCGAGGCCCAAAATCTTGCCCGGCCACCACGACCCATTTCGGCGGCGGACCCAAACTAACCCTCCAACCGATGAATCTATACCCTTGGCCTCGCTAGAACTTCCCATCTCCAAAACCCCCAGAACCCAAAGACCAGGGGAAAGAATTCCTCGAATGAACAACCCCTTAGCTGTTCATCTTGAAGCGCAATCAGTAGTGATTAAAACCGTAAAAAACCTTGCTTTCACCGACAAATGCATACACCCCTAA

Protein sequence

MLASSRPRSFTGVPDLGETKQLSDNSSRPKILPGHHDPFRRRTQTNPPTDESIPLASLELPISKTPRTQRPGERIPRMNNPLAVHLEAQSVVIKTVKNLAFTDKCIHP
Homology
[Close]
BLAST of MELO3C029271 vs. NCBI nr
Match: CAB3447613.1 (unnamed protein product [Digitaria exilis])

HSP 1 Score: 53.9 bits (128), Expect = 9.9e-04
Identity = 31/68 (45.59%), Postives = 38/68 (55.88%), Query Frame = 0 

Query: 9  SFTGVPDLGETKQLSDNSSRPKILPGHHDPFRRRTQTNPPTDESIPLASLELPISKTPRT 68
          S TGVPDLG+      +SS P+ILPGHHDPF RRT T  P + S        P  + P +
Sbjct: 27 SLTGVPDLGDMICDGGSSSGPRILPGHHDPFLRRTHTMVPGEVS--------PTPQQPPS 86

Query: 69 QRPGERIP 77
            P  R+P
Sbjct: 87 PFPPSRLP 86

[Close]
BLAST of MELO3C029271 vs. ExPASy TrEMBL
Match: A0A0A9F2B7 (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.5e-05
Identity = 31/56 (55.36%), Postives = 36/56 (64.29%), Query Frame = 0 

Query: 1  MLASSRPRSFTGVP-DLGETKQLSDNSSRPKILPGHHDPFRRRTQTNPPTDESIPL 56
          ML S RPRS  GVP + G   Q S +SS P+I PGH DP RRRT T+ PT  S P+
Sbjct: 1  MLPSWRPRSLMGVPAERGGMTQFSGSSSMPRIRPGHQDPLRRRTHTSAPTSASAPV 56

[Close]
BLAST of MELO3C029271 vs. ExPASy TrEMBL
Match: A0A2P2KC87 (Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 8.2e-04
Identity = 29/52 (55.77%), Postives = 33/52 (63.46%), Query Frame = 0 

Query: 1  MLASSRPRSFTGVPDLGETKQLSDNSSRPKILPGHHDPFRRRTQTNPPTDES 53
          +LASS PRS TGVP LG+    S +SS   ILPGH +PF  RT T  PT  S
Sbjct: 33 ILASSLPRSLTGVPVLGDDTLQSASSSGSSILPGHQEPFLLRTHTIGPTQPS 84

The following BLAST results are available for this feature:
BLAST of MELO3C029271 vs. NCBI nr
Match NameE-valueIdentityDescription
CAB3447613.19.9e-0445.59unnamed protein product [Digitaria exilis][more]
BLAST of MELO3C029271 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C029271 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A9F2B71.5e-0555.36Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1[more]
A0A2P2KC878.2e-0455.77Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1[more]
BLAST of MELO3C029271 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..56
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 30..44

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C029271.1MELO3C029271.1mRNA