MELO3C029245 (gene) Melon (DHL92) v4

Overview


Name	MELO3C029245
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	RING/U-box superfamily protein
Location	chr01: 33266365 .. 33267149 (+)
RNA-Seq Expression	MELO3C029245
Synteny	MELO3C029245

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTACCGAATGAAACAGCTGAGAAATGGAACAAAGCACTTTGCGAAGTGGTTTATCGTGAAGAAGAGAAAGTGGTTTGCCCATTCAAGGATTGCTCGGTGGGAATGATCGTTGAGAGAGACGCGAAAATAAGGGATTGTGAGTGTCCGCTTTGCCATAGATTGTTTTGCGGAACGTGTCGAGTCCCATGGCACGAGGGTGTCACGTGCGAGGATTATAAGAGACTTTATAAATATGAAGAGATTAGAGATGAAATTTTAATGGAAAAATTAGCTTCTCAAATGAAATGGATGAAATGTCCCAAATGCCAACTTTTTGTTGAGAAGGTTTCTGGTTGTTTGCATATCACTTGCAGGTTCATTTCTAACCTCCCCCTCTTCTCTTACTTTTTTTCAAATTTTTAGAAATAATTATACCCCTGAGCAAAAATTCAAATCCATGTTGATAGACCTTTGTCAATAGTATATGCATGAGGACTAATATTTGAGCCATATGAAGTGGAAGGATGAGTAATGTTAAGAGTTTATTTTGGATTTAAATCACGATTACATATGAAAATTTTAGATTGTAATTTAATTTGTATATGGTTGATGAAATTGTTGCAGGTGTCGATTCGAGTTCTGCTATGCTTGTGGATCGGCTTGGTCTTCCACCCATGGTGGTTGCCTACCTTACTATTGAAATGTTGTGTATTTTGTTTTATATGTTTTCTTTGTTTTTCTCATGTTCTTTAAATGTATTTTTTTTTTCTAGAAAAAATGAGCAACGACAAGAATTGGTGTGA

mRNA sequence

ATGCTACCGAATGAAACAGCTGAGAAATGGAACAAAGCACTTTGCGAAGTGGTTTATCGTGAAGAAGAGAAAGTGGTTTGCCCATTCAAGGATTGCTCGGTGGGAATGATCGTTGAGAGAGACGCGAAAATAAGGGATTGTGAGTGTCCGCTTTGCCATAGATTGTTTTGCGGAACGTGTCGAGTCCCATGGCACGAGGGTGTCACGTGCGAGGATTATAAGAGACTTTATAAATATGAAGAGATTAGAGATGAAATTTTAATGGAAAAATTAGCTTCTCAAATGAAATGGATGAAATGTCCCAAATGCCAACTTTTTGTTGAGAAGGTTTCTGGTGTCGATTCGAGTTCTGCTATGCTTGTGGATCGGCTTGGTCTTCCACCCATGGTGGTTGCCTACCTTACTATTGAAATGTTAAAAAATGAGCAACGACAAGAATTGGTGTGA

Coding sequence (CDS)

ATGCTACCGAATGAAACAGCTGAGAAATGGAACAAAGCACTTTGCGAAGTGGTTTATCGTGAAGAAGAGAAAGTGGTTTGCCCATTCAAGGATTGCTCGGTGGGAATGATCGTTGAGAGAGACGCGAAAATAAGGGATTGTGAGTGTCCGCTTTGCCATAGATTGTTTTGCGGAACGTGTCGAGTCCCATGGCACGAGGGTGTCACGTGCGAGGATTATAAGAGACTTTATAAATATGAAGAGATTAGAGATGAAATTTTAATGGAAAAATTAGCTTCTCAAATGAAATGGATGAAATGTCCCAAATGCCAACTTTTTGTTGAGAAGGTTTCTGGTGTCGATTCGAGTTCTGCTATGCTTGTGGATCGGCTTGGTCTTCCACCCATGGTGGTTGCCTACCTTACTATTGAAATGTTAAAAAATGAGCAACGACAAGAATTGGTGTGA

Protein sequence

MLPNETAEKWNKALCEVVYREEEKVVCPFKDCSVGMIVERDAKIRDCECPLCHRLFCGTCRVPWHEGVTCEDYKRLYKYEEIRDEILMEKLASQMKWMKCPKCQLFVEKVSGVDSSSAMLVDRLGLPPMVVAYLTIEMLKNEQRQELV

Homology

[Close]

BLAST of MELO3C029245 vs. NCBI nr
Match: XP_008461214.1 (PREDICTED: probable E3 ubiquitin-protein ligase RNF217 [Cucumis melo])

HSP 1 Score: 247.7 bits (631), Expect = 6.4e-62
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0


Query: 1   MLPNETAEKWNKALCEVVYREEEKVVCPFKDCSVGMIVERDAKIRDCECPLCHRLFCGTC 60
           MLPNETAEKWNKALCEVVYREEEKVVCPFKDCSVGMIVERDAKIRDCECPLCHRLFCGTC
Sbjct: 1   MLPNETAEKWNKALCEVVYREEEKVVCPFKDCSVGMIVERDAKIRDCECPLCHRLFCGTC 60

Query: 61  RVPWHEGVTCEDYKRLYKYEEIRDEILMEKLASQMKWMKCPKCQLFVEKVSG 113
           RVPWHEGVTCEDYKRLYKYEEIRDEILMEKLASQMKWMKCPKCQLFVEKVSG
Sbjct: 61  RVPWHEGVTCEDYKRLYKYEEIRDEILMEKLASQMKWMKCPKCQLFVEKVSG 112

[Close]

BLAST of MELO3C029245 vs. NCBI nr
Match: TYK10490.1 (putative E3 ubiquitin-protein ligase RNF217 [Cucumis melo var. makuwa])

HSP 1 Score: 243.0 bits (619), Expect = 1.6e-60
Identity = 110/112 (98.21%), Postives = 111/112 (99.11%), Query Frame = 0


Query: 1   MLPNETAEKWNKALCEVVYREEEKVVCPFKDCSVGMIVERDAKIRDCECPLCHRLFCGTC 60
           MLPNETAEKWNKALCEVVYREEEKVVCPFKDCSVGMIVERDAKIRDCECPLCHRLFCGTC
Sbjct: 66  MLPNETAEKWNKALCEVVYREEEKVVCPFKDCSVGMIVERDAKIRDCECPLCHRLFCGTC 125

Query: 61  RVPWHEGVTCEDYKRLYKYEEIRDEILMEKLASQMKWMKCPKCQLFVEKVSG 113
           RVPWHEGVTCEDYKRLYKYEE RDEILM+KLASQMKWMKCPKCQLFVEKVSG
Sbjct: 126 RVPWHEGVTCEDYKRLYKYEEGRDEILMKKLASQMKWMKCPKCQLFVEKVSG 177

[Close]

BLAST of MELO3C029245 vs. NCBI nr
Match: KAA0058684.1 (putative E3 ubiquitin-protein ligase RNF217 [Cucumis melo var. makuwa])

HSP 1 Score: 240.4 bits (612), Expect = 1.0e-59
Identity = 108/112 (96.43%), Postives = 110/112 (98.21%), Query Frame = 0


Query: 1   MLPNETAEKWNKALCEVVYREEEKVVCPFKDCSVGMIVERDAKIRDCECPLCHRLFCGTC 60
           MLPNETAEKWNKALCEVVYREEEKVVCPFKDCSVGMIVERDAKIRDCECPLCHRLFCGTC
Sbjct: 66  MLPNETAEKWNKALCEVVYREEEKVVCPFKDCSVGMIVERDAKIRDCECPLCHRLFCGTC 125

Query: 61  RVPWHEGVTCEDYKRLYKYEEIRDEILMEKLASQMKWMKCPKCQLFVEKVSG 113
           RVPWHEGVTCEDYKRLYKYE+ RDEILM+KLASQMKWMKCPKCQ FVEKVSG
Sbjct: 126 RVPWHEGVTCEDYKRLYKYEDGRDEILMKKLASQMKWMKCPKCQFFVEKVSG 177

[Close]

BLAST of MELO3C029245 vs. NCBI nr
Match: KAE8646419.1 (hypothetical protein Csa_016113 [Cucumis sativus])

HSP 1 Score: 203.4 bits (516), Expect = 1.4e-48
Identity = 89/112 (79.46%), Postives = 97/112 (86.61%), Query Frame = 0


Query: 1   MLPNETAEKWNKALCEVVYREEEKVVCPFKDCSVGMIVERDAKIRDCECPLCHRLFCGTC 60
           MLP E  EKWNKALCEV+Y  EEKVVCPFKDCSVG+ +ER A IRDCECPLCHRLFC TC
Sbjct: 50  MLPKEIGEKWNKALCEVLYSTEEKVVCPFKDCSVGITLERGASIRDCECPLCHRLFCATC 109

Query: 61  RVPWHEGVTCEDYKRLYKYEEIRDEILMEKLASQMKWMKCPKCQLFVEKVSG 113
            VPWH+GVTCE+YKRLYK EE R+EILM+KLASQMKWMKCPKC  FVEK+ G
Sbjct: 110 EVPWHDGVTCEEYKRLYKNEEGRNEILMKKLASQMKWMKCPKCNFFVEKIYG 161

[Close]

BLAST of MELO3C029245 vs. NCBI nr
Match: RXH89093.1 (hypothetical protein DVH24_006071 [Malus domestica])

HSP 1 Score: 150.2 bits (378), Expect = 1.4e-32
Identity = 64/134 (47.76%), Postives = 95/134 (70.90%), Query Frame = 0


Query: 1   MLPNETAEKWNKALCEVVYREEEKVVCPFKDCSVGMIVERDAK--IRDCECPLCHRLFCG 60
           MLP E  E+WN ALCE +    +++ CPF DCS  ++++ + +  IR+ ECP+CHRLFC 
Sbjct: 208 MLPKEVIERWNDALCEAMVLGAQRLYCPFSDCSTVLMIDNEGEEAIRESECPICHRLFCA 267

Query: 61  TCRVPWHEGVTCEDYKRLYKYEEIRDEILMEKLASQMKWMKCPKCQLFVEKVSGVDSSSA 120
            C+VPWH GV CE+Y+RL + E  R ++++++LA Q KW +CP+C+ +VEK  G ++SSA
Sbjct: 268 RCQVPWHPGVDCEEYRRLNEDERGRADLMVKELAKQKKWKRCPRCKYYVEKTQGANTSSA 327

Query: 121 MLVDRLGLPPMVVA 133
           M V++ G   MVVA
Sbjct: 328 MGVEQNGQVLMVVA 341

[Close]

BLAST of MELO3C029245 vs. ExPASy Swiss-Prot
Match: D3YYI7 (Probable E3 ubiquitin-protein ligase RNF217 OS=Mus musculus OX=10090 GN=Rnf217 PE=3 SV=2)

HSP 1 Score: 58.9 bits (141), Expect = 5.5e-08
Identity = 24/67 (35.82%), Postives = 37/67 (55.22%), Query Frame = 0


Query: 48  ECPLCHRLFCGTCRVPWHEGVTCEDYKRLYKYEEIRDEILMEKLASQMKWMKCPKCQLFV 107
           +CP C  ++C  C  PWHEGV C++YK   K +++      E    Q    KCPKC++ +
Sbjct: 347 QCPTCQLIWCFKCHSPWHEGVNCKEYK---KGDKLLRHWASEIEHGQRNAQKCPKCKIHI 406

Query: 108 EKVSGVD 115
           ++  G D
Sbjct: 407 QRTEGCD 410

[Close]

BLAST of MELO3C029245 vs. ExPASy Swiss-Prot
Match: Q8TC41 (Probable E3 ubiquitin-protein ligase RNF217 OS=Homo sapiens OX=9606 GN=RNF217 PE=2 SV=4)

HSP 1 Score: 58.2 bits (139), Expect = 9.4e-08
Identity = 24/67 (35.82%), Postives = 37/67 (55.22%), Query Frame = 0


Query: 48  ECPLCHRLFCGTCRVPWHEGVTCEDYKRLYKYEEIRDEILMEKLASQMKWMKCPKCQLFV 107
           +CP C  ++C  C  PWHEGV C++YK   K +++      E    Q    KCPKC++ +
Sbjct: 374 QCPTCQFVWCFKCHSPWHEGVNCKEYK---KGDKLLRHWASEIEHGQRNAQKCPKCKIHI 433

Query: 108 EKVSGVD 115
           ++  G D
Sbjct: 434 QRTEGCD 437

[Close]

BLAST of MELO3C029245 vs. ExPASy Swiss-Prot
Match: Q4KLT0 (Probable E3 ubiquitin-protein ligase RNF217 OS=Xenopus laevis OX=8355 GN=rnf217 PE=2 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 2.7e-07
Identity = 23/67 (34.33%), Postives = 36/67 (53.73%), Query Frame = 0


Query: 48  ECPLCHRLFCGTCRVPWHEGVTCEDYKRLYKYEEIRDEILMEKLASQMKWMKCPKCQLFV 107
           +CP C  ++C  C  PWHEGV C +YK   K +++      E    Q    KCP+C++ +
Sbjct: 114 QCPSCQFIWCFRCHAPWHEGVNCREYK---KGDKLLRHWANEIEHGQRNAQKCPRCKVHI 173

Query: 108 EKVSGVD 115
           ++  G D
Sbjct: 174 QRTEGCD 177

[Close]

BLAST of MELO3C029245 vs. ExPASy TrEMBL
Match: A0A1S3CDQ5 (probable E3 ubiquitin-protein ligase RNF217 OS=Cucumis melo OX=3656 GN=LOC103499864 PE=3 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 3.1e-62
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0


Query: 1   MLPNETAEKWNKALCEVVYREEEKVVCPFKDCSVGMIVERDAKIRDCECPLCHRLFCGTC 60
           MLPNETAEKWNKALCEVVYREEEKVVCPFKDCSVGMIVERDAKIRDCECPLCHRLFCGTC
Sbjct: 1   MLPNETAEKWNKALCEVVYREEEKVVCPFKDCSVGMIVERDAKIRDCECPLCHRLFCGTC 60

Query: 61  RVPWHEGVTCEDYKRLYKYEEIRDEILMEKLASQMKWMKCPKCQLFVEKVSG 113
           RVPWHEGVTCEDYKRLYKYEEIRDEILMEKLASQMKWMKCPKCQLFVEKVSG
Sbjct: 61  RVPWHEGVTCEDYKRLYKYEEIRDEILMEKLASQMKWMKCPKCQLFVEKVSG 112

[Close]

BLAST of MELO3C029245 vs. ExPASy TrEMBL
Match: A0A5D3CGK1 (Putative E3 ubiquitin-protein ligase RNF217 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G001400 PE=3 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 7.6e-61
Identity = 110/112 (98.21%), Postives = 111/112 (99.11%), Query Frame = 0


Query: 1   MLPNETAEKWNKALCEVVYREEEKVVCPFKDCSVGMIVERDAKIRDCECPLCHRLFCGTC 60
           MLPNETAEKWNKALCEVVYREEEKVVCPFKDCSVGMIVERDAKIRDCECPLCHRLFCGTC
Sbjct: 66  MLPNETAEKWNKALCEVVYREEEKVVCPFKDCSVGMIVERDAKIRDCECPLCHRLFCGTC 125

Query: 61  RVPWHEGVTCEDYKRLYKYEEIRDEILMEKLASQMKWMKCPKCQLFVEKVSG 113
           RVPWHEGVTCEDYKRLYKYEE RDEILM+KLASQMKWMKCPKCQLFVEKVSG
Sbjct: 126 RVPWHEGVTCEDYKRLYKYEEGRDEILMKKLASQMKWMKCPKCQLFVEKVSG 177

[Close]

BLAST of MELO3C029245 vs. ExPASy TrEMBL
Match: A0A5A7UU31 (Putative E3 ubiquitin-protein ligase RNF217 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold339G001540 PE=3 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 4.9e-60
Identity = 108/112 (96.43%), Postives = 110/112 (98.21%), Query Frame = 0


Query: 1   MLPNETAEKWNKALCEVVYREEEKVVCPFKDCSVGMIVERDAKIRDCECPLCHRLFCGTC 60
           MLPNETAEKWNKALCEVVYREEEKVVCPFKDCSVGMIVERDAKIRDCECPLCHRLFCGTC
Sbjct: 66  MLPNETAEKWNKALCEVVYREEEKVVCPFKDCSVGMIVERDAKIRDCECPLCHRLFCGTC 125

Query: 61  RVPWHEGVTCEDYKRLYKYEEIRDEILMEKLASQMKWMKCPKCQLFVEKVSG 113
           RVPWHEGVTCEDYKRLYKYE+ RDEILM+KLASQMKWMKCPKCQ FVEKVSG
Sbjct: 126 RVPWHEGVTCEDYKRLYKYEDGRDEILMKKLASQMKWMKCPKCQFFVEKVSG 177

[Close]

BLAST of MELO3C029245 vs. ExPASy TrEMBL
Match: A0A0A0K9X9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G430760 PE=3 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 6.7e-49
Identity = 89/112 (79.46%), Postives = 97/112 (86.61%), Query Frame = 0


Query: 1   MLPNETAEKWNKALCEVVYREEEKVVCPFKDCSVGMIVERDAKIRDCECPLCHRLFCGTC 60
           MLP E  EKWNKALCEV+Y  EEKVVCPFKDCSVG+ +ER A IRDCECPLCHRLFC TC
Sbjct: 66  MLPKEIGEKWNKALCEVLYSTEEKVVCPFKDCSVGITLERGASIRDCECPLCHRLFCATC 125

Query: 61  RVPWHEGVTCEDYKRLYKYEEIRDEILMEKLASQMKWMKCPKCQLFVEKVSG 113
            VPWH+GVTCE+YKRLYK EE R+EILM+KLASQMKWMKCPKC  FVEK+ G
Sbjct: 126 EVPWHDGVTCEEYKRLYKNEEGRNEILMKKLASQMKWMKCPKCNFFVEKIYG 177

[Close]

BLAST of MELO3C029245 vs. ExPASy TrEMBL
Match: A0A498J5M3 (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_006071 PE=3 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 6.7e-33
Identity = 64/134 (47.76%), Postives = 95/134 (70.90%), Query Frame = 0


Query: 1   MLPNETAEKWNKALCEVVYREEEKVVCPFKDCSVGMIVERDAK--IRDCECPLCHRLFCG 60
           MLP E  E+WN ALCE +    +++ CPF DCS  ++++ + +  IR+ ECP+CHRLFC 
Sbjct: 208 MLPKEVIERWNDALCEAMVLGAQRLYCPFSDCSTVLMIDNEGEEAIRESECPICHRLFCA 267

Query: 61  TCRVPWHEGVTCEDYKRLYKYEEIRDEILMEKLASQMKWMKCPKCQLFVEKVSGVDSSSA 120
            C+VPWH GV CE+Y+RL + E  R ++++++LA Q KW +CP+C+ +VEK  G ++SSA
Sbjct: 268 RCQVPWHPGVDCEEYRRLNEDERGRADLMVKELAKQKKWKRCPRCKYYVEKTQGANTSSA 327

Query: 121 MLVDRLGLPPMVVA 133
           M V++ G   MVVA
Sbjct: 328 MGVEQNGQVLMVVA 341

[Close]

BLAST of MELO3C029245 vs. TAIR 10
Match: AT3G53690.1 (RING/U-box superfamily protein )

HSP 1 Score: 118.6 bits (296), Expect = 4.2e-27
Identity = 48/113 (42.48%), Postives = 71/113 (62.83%), Query Frame = 0


Query: 1   MLPNETAEKWNKALCEVVYREEEKVVCPFKDCSVGMIVER-DAKIRDCECPLCHRLFCGT 60
           +LP E  ++W  ALCE V    +K  CP+KDCS  + +E  + K++D ECP CHR+ C  
Sbjct: 176 ILPKEVFDRWGDALCEAVVMRSKKFYCPYKDCSALVFLEESEVKMKDSECPHCHRMVCVE 235

Query: 61  CRVPWHEGVTCEDYKRLYKYEEIRDEILMEKLASQMKWMKCPKCQLFVEKVSG 113
           C   WH  +TCE++++L   E  RD+IL+  +A Q KW +CP C+ ++EK  G
Sbjct: 236 CGTQWHPEMTCEEFQKLAANERGRDDILLATMAKQKKWKRCPSCKFYIEKSQG 288

[Close]

BLAST of MELO3C029245 vs. TAIR 10
Match: AT3G14250.1 (RING/U-box superfamily protein )

HSP 1 Score: 106.3 bits (264), Expect = 2.1e-23
Identity = 44/117 (37.61%), Postives = 68/117 (58.12%), Query Frame = 0


Query: 1   MLPNETAEKWNKALCEVVYREEEKVVCPFKDCSVGMIVER--DAKIRDCECPLCHRLFCG 60
           ++P +  ++W K LCE +    +K  CPFKDCS  M+     DA +   EC  CHRLFC 
Sbjct: 157 LIPKDVFDRWEKILCESLISSWDKFYCPFKDCSAMMVNNENGDANVTQTECRSCHRLFCV 216

Query: 61  TCRVPWHEGVTCEDYKRL---YKYEEIRDEILMEKLASQMKWMKCPKCQLFVEKVSG 113
            C+V WH G+ C++++R     K     D+ L+ ++A   +W +CP C+ +V+KV G
Sbjct: 217 QCKVTWHAGIGCDEFQRFGNTKKKSSDEDDALLIQMAKNKQWRRCPSCKFYVDKVEG 273

[Close]

BLAST of MELO3C029245 vs. TAIR 10
Match: AT5G37560.1 (RING/U-box superfamily protein )

HSP 1 Score: 80.5 bits (197), Expect = 1.3e-15
Identity = 36/118 (30.51%), Postives = 66/118 (55.93%), Query Frame = 0


Query: 1   MLPNETAEKWNKALCEVVYREEEKVVCPFKDCSVGMIVERDAKIRDCE------CPLCHR 60
           +L  +  E W + + E +  + EK+ CP++ CS  M++ +    R+ E      C  C  
Sbjct: 241 VLTPKLIEMWKRKMEEDLIPDAEKIYCPYRSCS--MLMSKTELSREAEQSNVRACIKCSE 300

Query: 61  LFCGTCRVPWHEGVTCEDYKRLYKYEEIRDEILMEKLASQMKWMKCPKCQLFVEKVSG 113
           LFC  C+VPWH  ++C DYKR++  E + ++++++ LA+   W +C +C+  +E   G
Sbjct: 301 LFCIDCKVPWHSDLSCADYKRIHS-ERLVNDMMLKVLANDQMWRQCSECKHMIELTEG 355

[Close]

BLAST of MELO3C029245 vs. TAIR 10
Match: AT3G43750.1 (RING/U-box protein with C6HC-type zinc finger domain )

HSP 1 Score: 77.4 bits (189), Expect = 1.1e-14
Identity = 38/110 (34.55%), Postives = 57/110 (51.82%), Query Frame = 0


Query: 10  WNKALCEVVYREEEKVVCPFKDCS-------VGMIVERDAKIRDCECPLCHRLFCGTCRV 69
           W + + E +    E+V CP   CS       +    E D   R C C  C   FC  C+V
Sbjct: 225 WKQRIEEELILVAERVYCPNPRCSGLMSKTELSTSTEEDVSTRTC-CVKCGEPFCINCKV 284

Query: 70  PWHEGVTCEDYKRLYKYEEIRDEILMEKLASQMKWMKCPKCQLFVEKVSG 113
           PWH  ++C+DYKRL      +++I ++ LA+Q KW +C KCQ  + ++ G
Sbjct: 285 PWHSNLSCDDYKRLGP-NPTKNDIKLKVLANQQKWSQCAKCQHMIARIEG 332

[Close]

BLAST of MELO3C029245 vs. TAIR 10
Match: AT3G45470.1 (IBR domain containing protein )

HSP 1 Score: 73.6 bits (179), Expect = 1.5e-13
Identity = 35/115 (30.43%), Postives = 60/115 (52.17%), Query Frame = 0


Query: 1   MLPNETAEKWNKALCEVVYREEEKVVCPFKDCSVGMI---VERDAKIRDCECPLCHRLFC 60
           +L  +  E W   + E      +++ CP+ +CS  M    + R  K  D  C  C  L C
Sbjct: 66  VLKPKVIELWKHMMKEESIPLAKRIYCPYINCSTLMSKTEISRSNKSNDRACIKCSGLVC 125

Query: 61  GTCRVPWHEGVTCEDYKRLYKYEEIRDEILMEKLASQMKWMKCPKCQLFVEKVSG 113
             C+VPWH  ++C +YK+L+  + + D++ ++ LA+  KW +C KC+  +E   G
Sbjct: 126 IDCKVPWHSDLSCAEYKKLHP-DPVLDDLTLKLLANDQKWRQCVKCRHLIELNQG 179

The following BLAST results are available for this feature:

BLAST of MELO3C029245 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008461214.1	6.4e-62	100.00	PREDICTED: probable E3 ubiquitin-protein ligase RNF217 [Cucumis melo]	[more]
TYK10490.1	1.6e-60	98.21	putative E3 ubiquitin-protein ligase RNF217 [Cucumis melo var. makuwa]	[more]
KAA0058684.1	1.0e-59	96.43	putative E3 ubiquitin-protein ligase RNF217 [Cucumis melo var. makuwa]	[more]
KAE8646419.1	1.4e-48	79.46	hypothetical protein Csa_016113 [Cucumis sativus]	[more]
RXH89093.1	1.4e-32	47.76	hypothetical protein DVH24_006071 [Malus domestica]	[more]

BLAST of MELO3C029245 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
D3YYI7	5.5e-08	35.82	Probable E3 ubiquitin-protein ligase RNF217 OS=Mus musculus OX=10090 GN=Rnf217 P...	[more]
Q8TC41	9.4e-08	35.82	Probable E3 ubiquitin-protein ligase RNF217 OS=Homo sapiens OX=9606 GN=RNF217 PE...	[more]
Q4KLT0	2.7e-07	34.33	Probable E3 ubiquitin-protein ligase RNF217 OS=Xenopus laevis OX=8355 GN=rnf217 ...	[more]

BLAST of MELO3C029245 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CDQ5	3.1e-62	100.00	probable E3 ubiquitin-protein ligase RNF217 OS=Cucumis melo OX=3656 GN=LOC103499...	[more]
A0A5D3CGK1	7.6e-61	98.21	Putative E3 ubiquitin-protein ligase RNF217 OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A5A7UU31	4.9e-60	96.43	Putative E3 ubiquitin-protein ligase RNF217 OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A0A0K9X9	6.7e-49	79.46	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G430760 PE=3 SV=1	[more]
A0A498J5M3	6.7e-33	47.76	Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_006071 PE=3 SV=1	[more]

BLAST of MELO3C029245 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G53690.1	4.2e-27	42.48	RING/U-box superfamily protein	[more]
AT3G14250.1	2.1e-23	37.61	RING/U-box superfamily protein	[more]
AT5G37560.1	1.3e-15	30.51	RING/U-box superfamily protein	[more]
AT3G43750.1	1.1e-14	34.55	RING/U-box protein with C6HC-type zinc finger domain	[more]
AT3G45470.1	1.5e-13	30.43	IBR domain containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002867	IBR domain	SMART	SM00647	ibrneu5	coord: 8..70 e-value: 9.7E-11 score: 51.7
IPR002867	IBR domain	PFAM	PF01485	IBR	coord: 10..70 e-value: 1.1E-8 score: 35.1
None	No IPR available	GENE3D	2.20.25.20		coord: 25..75 e-value: 5.4E-6 score: 28.4
None	No IPR available	PANTHER	PTHR11685:SF309	RBR-TYPE E3 UBIQUITIN TRANSFERASE	coord: 2..114
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 10..75
IPR031127	E3 ubiquitin ligase RBR family	PANTHER	PTHR11685	RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING	coord: 2..114
IPR044066	TRIAD supradomain	PROSITE	PS51873	TRIAD	coord: 1..148 score: 11.747043

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C029245.1	MELO3C029245.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
molecular_function	GO:0004842	ubiquitin-protein transferase activity