MELO3C029235 (gene) Melon (DHL92) v4

Overview
NameMELO3C029235
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionReverse transcriptase Ty1/copia-type domain-containing protein
Locationchr01: 31272088 .. 31273624 (-)
RNA-Seq ExpressionMELO3C029235
SyntenyMELO3C029235
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGAGTCTGCTGCTCCTATCTCTCTTGCTATGCATGCACATCGAGCTTCTGAGGCCACTGTATCGGATATGGATTCAGATGATCAGGATAATGTTCCATTAATCTGTTTGTTTCCCTCAGGGCCAGTTACAGCCGGGAGACTCCCTTCTTATCCGCTGGGTTCCATTCACTCTCAAGAGAGCTCATCAACCGAAGGGGTATTCATTCCAACTCCAGGAGACCCTCGACGCTCACCATCTATACCTTCAGGTCATTCTCCCTTTATTCACCCTCATCGATTGAAACTACCTACTTCGCAACCGGATGCGGTGCCTGCACACATTCCTGAAATCGCTACTGCTGCACGTGAAGAACATACTGATGGTTTTCAAAATGATGACCAGTGTGCTTCTTTTAACCAGACTGAGATACCTCCTGAATACATTCCTCCTTTTACTGATGATCCCATTGCACCATCTTCTAAAGGAAGGCCAGAGTCTCCTAAAGGTCCTAAACCCCCAAAAAGAAAAAGTCAACAGGCTAGAAGAAATGTTACCACAAAAACTGCCAGAAAGAAAATCCCTGCAAATGTTCCATCTGTTCCCATTGATGGAATTTCTTTTCATCACGAGAAAAACGTTAAACGCTGAAAGTTTGTGATGCAGAGAAGAATTGCCGATGAGGTAAATATATCTGACAACCACCAATCCTACATGAGTATCATGAACCTTATCCATAAGGCTGGTTTGAAAAAAACTATCTCGAATATTGGTCCTTTTATCCCCAGTTAATTAGAGAATTTATTGTCAATCTGCCTGATGAGTTTAATGATCCAAGTAGTGTTGACTATCAGATGGTGCATATTAGAGGGTTCAAATTTGTTATTTCACCTGCTGTGATAAATGGGTTTCTTGGAAATACTGTTGATATTGACTGCTCTCCATCATGTCCTACTATTGAGGTTTTAGCTAATGTCTTATCTAGAGGGACCTTGTCCACATGGCCTGTGAATGGAATCCCTGCAGCTGCTCTCAATGTCAAGTATGCCATTCTGCACAAGATTGACATTGCCAATTGGTTCTCTTCCTCACATGCCTTAAGCATATATGCTACCTGAGGTACATTCTTGTATCAAATTTGTAATAGTGATAAAGTAGATACGGGTGCCTTCATTTACAATCAACTGTTGAGGCATGTTTAGTTGTTTCGGGTCAAGGTTCCCATTTCTTTTTCGAGGTTGTTCTCTAGTTTGCTACTTCATCTAAATGGTGCGGTGCTTACTGCATCCGATGCTCCTGGACCTGAACCTAAGACAATTGCACTTTAGCTACAGACTCTTTCAAGGTAGTCATGTGCCTGATATTGACCATGATGTGCATCCAACTCGGGGCCCACGTATTTTTGACACTACTGACTGGGATGACTCTGCTGAAGGCTTCTATGTGGATCATGAGTTAGCTACCTGCCTTATTAATTCCTTGACTGCTGAATCTCGTGCACTAACTAACTCCATCACTCTGTTGTCTGAACGTCGATTAGAGGTTGATGCTCTTATTCGA

mRNA sequence

GGAGTCTGCTGCTCCTATCTCTCTTGCTATGCATGCACATCGAGCTTCTGAGGCCACTGTATCGGATATGGATTCAGATGATCAGGATAATGTTCCATTAATCTGAGACCCTCGACGCTCACCATCTATACCTTCAGGTCATTCTCCCTTTATTCACCCTCATCGATTGAAACTACCTACTTCGCAACCGGATGCGGTGCCTGCACACATTCCTGAAATCGCTACTGCTGCACGTGAAGAACATACTGATGGAAGGCCAGAGTCTCCTAAAGGTCCTAAACCCCCAAAAAGAAAAAGTCAACAGGCTAGAAGAAATGTTACCACAAAAACTGCCAGAAAGAAAATCCCTGCAAATGTTCCATCTGTTCCCATTGATGGAATTTCTTTTCATCACGAGAAAAACGTTAAACGCTGAAAGTTTGTGATGCAGAGAAGAATTGCCGATGAGTTAATTAGAGAATTTATTGTCAATCTGCCTGATGAGTTTAATGATCCAAGTAGTGTTGACTATCAGATGGTGCATATTAGAGGGTTCAAATTTGTTATTTCACCTGCTGTGATAAATGGGTTTCTTGGAAATACTGTTGATATTGACTGCTCTCCATCATGTCCTACTATTGAGGTTTTAGCTAATGTCTTATCTAGAGGGACCTTGTCCACATGGCCTGTGAATGGAATCCCTGCAGCTGCTCTCAATGTCAAGTATGCCATTCTGCACAAGATTGACATTGCCAATTGGTTCTCTTCCTCACATGCCTTAAGCATATATGCTACCTGAGGTACATTCTTGTATCAAATTTGTAATAGTGATAAAGTAGATACGGGTGCCTTCATTTACAATCAACTGTTGAGGCATGTTTAGTTGTTTCGGGTCAAGGTTCCCATTTCTTTTTCGAGGTTGTTCTCTAGTTTGCTACTTCATCTAAATGGTGCGGTGCTTACTGCATCCGATGCTCCTGGACCTGAACCTAAGACAATTGCACTTTAGCTACAGACTCTTTCAAGGTAGTCATGTGCCTGATATTGACCATGATGTGCATCCAACTCGGGGCCCACGTATTTTTGACACTACTGACTGGGATGACTCTGCTGAAGGCTTCTATGTGGATCATGAGTTAGCTACCTGCCTTATTAATTCCTTGACTGCTGAATCTCGTGCACTAACTAACTCCATCACTCTGTTGTCTGAACGTCGATTAGAGGTTGATGCTCTTATTCGA

Coding sequence (CDS)

ATGCAGAGAAGAATTGCCGATGAGTTAATTAGAGAATTTATTGTCAATCTGCCTGATGAGTTTAATGATCCAAGTAGTGTTGACTATCAGATGGTGCATATTAGAGGGTTCAAATTTGTTATTTCACCTGCTGTGATAAATGGGTTTCTTGGAAATACTGTTGATATTGACTGCTCTCCATCATGTCCTACTATTGAGGTTTTAGCTAATGTCTTATCTAGAGGGACCTTGTCCACATGGCCTGTGAATGGAATCCCTGCAGCTGCTCTCAATGTCAAGTATGCCATTCTGCACAAGATTGACATTGCCAATTGGTTCTCTTCCTCACATGCCTTAAGCATATATGCTACCTGA

Protein sequence

MQRRIADELIREFIVNLPDEFNDPSSVDYQMVHIRGFKFVISPAVINGFLGNTVDIDCSPSCPTIEVLANVLSRGTLSTWPVNGIPAAALNVKYAILHKIDIANWFSSSHALSIYAT
Homology
[Close]
BLAST of MELO3C029235 vs. NCBI nr
Match: KAA0066164.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK15206.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 203.8 bits (517), Expect = 8.4e-49
Identity = 100/115 (86.96%), Postives = 106/115 (92.17%), Query Frame = 0 

Query: 1    MQRRIADELIREFIVNLPDEFNDPSSVDYQMVHIRGFKFVISPAVINGFLGNTVDIDCSP 60
            MQRRIA+ELIR+FIVNLPD+FNDPSS DYQ VHIRGFKF+ISPAVINGFLGNTVDIDCSP
Sbjct: 1210 MQRRIAEELIRKFIVNLPDDFNDPSSADYQTVHIRGFKFMISPAVINGFLGNTVDIDCSP 1269

Query: 61   SCPTIEVLANVLSRGTLSTWPVNGIPAAALNVKYAILHKIDIANWFSSSHALSIY 116
            SCPT EVLA VLS  TLSTW VN IPAAAL+VKYAILHKIDIANWF SSHALSI+
Sbjct: 1270 SCPTTEVLATVLSGRTLSTWLVNEIPAAALSVKYAILHKIDIANWFLSSHALSIF 1324

[Close]
BLAST of MELO3C029235 vs. NCBI nr
Match: XP_008463184.1 (PREDICTED: uncharacterized protein LOC103501393 [Cucumis melo])

HSP 1 Score: 203.8 bits (517), Expect = 8.4e-49
Identity = 100/115 (86.96%), Postives = 106/115 (92.17%), Query Frame = 0 

Query: 1   MQRRIADELIREFIVNLPDEFNDPSSVDYQMVHIRGFKFVISPAVINGFLGNTVDIDCSP 60
           MQRRIA+ELIR+FIVNLPD+FNDPSS DYQ VHIRGFKF+ISPAVINGFLGNTVDIDCSP
Sbjct: 18  MQRRIAEELIRKFIVNLPDDFNDPSSADYQTVHIRGFKFMISPAVINGFLGNTVDIDCSP 77

Query: 61  SCPTIEVLANVLSRGTLSTWPVNGIPAAALNVKYAILHKIDIANWFSSSHALSIY 116
           SCPT EVLA VLS  TLSTW VN IPAAAL+VKYAILHKIDIANWF SSHALSI+
Sbjct: 78  SCPTTEVLATVLSGRTLSTWLVNEIPAAALSVKYAILHKIDIANWFLSSHALSIF 132

[Close]
BLAST of MELO3C029235 vs. NCBI nr
Match: KAA0048225.1 (uncharacterized protein E6C27_scaffold63G001400 [Cucumis melo var. makuwa])

HSP 1 Score: 203.8 bits (517), Expect = 8.4e-49
Identity = 100/116 (86.21%), Postives = 104/116 (89.66%), Query Frame = 0 

Query: 1   MQRRIADELIREFIVNLPDEFNDPSSVDYQMVHIRGFKFVISPAVINGFLGNTVDIDCSP 60
           MQRRIADELIREFIVNLPD+FNDPSS +YQ VHIRGFKFVISP VINGFLGNTVDIDCSP
Sbjct: 240 MQRRIADELIREFIVNLPDKFNDPSSDNYQTVHIRGFKFVISPTVINGFLGNTVDIDCSP 299

Query: 61  SCPTIEVLANVLSRGTLSTWPVNGIPAAALNVKYAILHKIDIANWFSSSHALSIYA 117
           SCPTIEVL NVL  GTLSTWPVNGIP AA ++KYAILHKI IA WF SSHALSI A
Sbjct: 300 SCPTIEVLTNVLYGGTLSTWPVNGIPTAAPSIKYAILHKIGIAKWFPSSHALSISA 355

[Close]
BLAST of MELO3C029235 vs. NCBI nr
Match: TYK08029.1 (uncharacterized protein E5676_scaffold265G001750 [Cucumis melo var. makuwa])

HSP 1 Score: 203.8 bits (517), Expect = 8.4e-49
Identity = 100/116 (86.21%), Postives = 104/116 (89.66%), Query Frame = 0 

Query: 1   MQRRIADELIREFIVNLPDEFNDPSSVDYQMVHIRGFKFVISPAVINGFLGNTVDIDCSP 60
           MQRRIADELIREFIVNLPD+FNDPSS +YQ VHIRGFKFVISP VINGFLGNTVDIDCSP
Sbjct: 233 MQRRIADELIREFIVNLPDKFNDPSSDNYQTVHIRGFKFVISPTVINGFLGNTVDIDCSP 292

Query: 61  SCPTIEVLANVLSRGTLSTWPVNGIPAAALNVKYAILHKIDIANWFSSSHALSIYA 117
           SCPTIEVL NVL  GTLSTWPVNGIP AA ++KYAILHKI IA WF SSHALSI A
Sbjct: 293 SCPTIEVLTNVLYGGTLSTWPVNGIPTAAPSIKYAILHKIGIAKWFPSSHALSISA 348

[Close]
BLAST of MELO3C029235 vs. NCBI nr
Match: XP_008451642.1 (PREDICTED: uncharacterized protein LOC103492875 [Cucumis melo])

HSP 1 Score: 203.0 bits (515), Expect = 1.4e-48
Identity = 99/116 (85.34%), Postives = 105/116 (90.52%), Query Frame = 0 

Query: 1   MQRRIADELIREFIVNLPDEFNDPSSVDYQMVHIRGFKFVISPAVINGFLGNTVDIDCSP 60
           +QRRIADELIREFI+NLPDEFNDPSS DYQ VHIRGFKF+ISP VINGFLGNTVDIDCS 
Sbjct: 180 IQRRIADELIREFIINLPDEFNDPSSADYQTVHIRGFKFMISPVVINGFLGNTVDIDCSS 239

Query: 61  SCPTIEVLANVLSRGTLSTWPVNGIPAAALNVKYAILHKIDIANWFSSSHALSIYA 117
           SCPT EVLA VLS GTLSTW VNGIPAAAL++KYAILHKI IANW SSSHA SI+A
Sbjct: 240 SCPTTEVLATVLSGGTLSTWLVNGIPAAALSIKYAILHKIGIANWSSSSHASSIFA 295

[Close]
BLAST of MELO3C029235 vs. ExPASy TrEMBL
Match: A0A5D3CXU0 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold790G00820 PE=4 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 4.1e-49
Identity = 100/115 (86.96%), Postives = 106/115 (92.17%), Query Frame = 0 

Query: 1    MQRRIADELIREFIVNLPDEFNDPSSVDYQMVHIRGFKFVISPAVINGFLGNTVDIDCSP 60
            MQRRIA+ELIR+FIVNLPD+FNDPSS DYQ VHIRGFKF+ISPAVINGFLGNTVDIDCSP
Sbjct: 1210 MQRRIAEELIRKFIVNLPDDFNDPSSADYQTVHIRGFKFMISPAVINGFLGNTVDIDCSP 1269

Query: 61   SCPTIEVLANVLSRGTLSTWPVNGIPAAALNVKYAILHKIDIANWFSSSHALSIY 116
            SCPT EVLA VLS  TLSTW VN IPAAAL+VKYAILHKIDIANWF SSHALSI+
Sbjct: 1270 SCPTTEVLATVLSGRTLSTWLVNEIPAAALSVKYAILHKIDIANWFLSSHALSIF 1324

[Close]
BLAST of MELO3C029235 vs. ExPASy TrEMBL
Match: A0A5D3CCI4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G001750 PE=4 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 4.1e-49
Identity = 100/116 (86.21%), Postives = 104/116 (89.66%), Query Frame = 0 

Query: 1   MQRRIADELIREFIVNLPDEFNDPSSVDYQMVHIRGFKFVISPAVINGFLGNTVDIDCSP 60
           MQRRIADELIREFIVNLPD+FNDPSS +YQ VHIRGFKFVISP VINGFLGNTVDIDCSP
Sbjct: 233 MQRRIADELIREFIVNLPDKFNDPSSDNYQTVHIRGFKFVISPTVINGFLGNTVDIDCSP 292

Query: 61  SCPTIEVLANVLSRGTLSTWPVNGIPAAALNVKYAILHKIDIANWFSSSHALSIYA 117
           SCPTIEVL NVL  GTLSTWPVNGIP AA ++KYAILHKI IA WF SSHALSI A
Sbjct: 293 SCPTIEVLTNVLYGGTLSTWPVNGIPTAAPSIKYAILHKIGIAKWFPSSHALSISA 348

[Close]
BLAST of MELO3C029235 vs. ExPASy TrEMBL
Match: A0A5A7U3J8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold63G001400 PE=4 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 4.1e-49
Identity = 100/116 (86.21%), Postives = 104/116 (89.66%), Query Frame = 0 

Query: 1   MQRRIADELIREFIVNLPDEFNDPSSVDYQMVHIRGFKFVISPAVINGFLGNTVDIDCSP 60
           MQRRIADELIREFIVNLPD+FNDPSS +YQ VHIRGFKFVISP VINGFLGNTVDIDCSP
Sbjct: 240 MQRRIADELIREFIVNLPDKFNDPSSDNYQTVHIRGFKFVISPTVINGFLGNTVDIDCSP 299

Query: 61  SCPTIEVLANVLSRGTLSTWPVNGIPAAALNVKYAILHKIDIANWFSSSHALSIYA 117
           SCPTIEVL NVL  GTLSTWPVNGIP AA ++KYAILHKI IA WF SSHALSI A
Sbjct: 300 SCPTIEVLTNVLYGGTLSTWPVNGIPTAAPSIKYAILHKIGIAKWFPSSHALSISA 355

[Close]
BLAST of MELO3C029235 vs. ExPASy TrEMBL
Match: A0A1S3CIL5 (uncharacterized protein LOC103501393 OS=Cucumis melo OX=3656 GN=LOC103501393 PE=4 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 4.1e-49
Identity = 100/115 (86.96%), Postives = 106/115 (92.17%), Query Frame = 0 

Query: 1   MQRRIADELIREFIVNLPDEFNDPSSVDYQMVHIRGFKFVISPAVINGFLGNTVDIDCSP 60
           MQRRIA+ELIR+FIVNLPD+FNDPSS DYQ VHIRGFKF+ISPAVINGFLGNTVDIDCSP
Sbjct: 18  MQRRIAEELIRKFIVNLPDDFNDPSSADYQTVHIRGFKFMISPAVINGFLGNTVDIDCSP 77

Query: 61  SCPTIEVLANVLSRGTLSTWPVNGIPAAALNVKYAILHKIDIANWFSSSHALSIY 116
           SCPT EVLA VLS  TLSTW VN IPAAAL+VKYAILHKIDIANWF SSHALSI+
Sbjct: 78  SCPTTEVLATVLSGRTLSTWLVNEIPAAALSVKYAILHKIDIANWFLSSHALSIF 132

[Close]
BLAST of MELO3C029235 vs. ExPASy TrEMBL
Match: A0A5A7UAL1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold673G001160 PE=4 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 6.9e-49
Identity = 100/116 (86.21%), Postives = 103/116 (88.79%), Query Frame = 0 

Query: 1   MQRRIADELIREFIVNLPDEFNDPSSVDYQMVHIRGFKFVISPAVINGFLGNTVDIDCSP 60
           MQRRIADELI EFIVNLPDEFN+PSS DYQ VHIRGFKFVISPAVINGFLGN VDIDCSP
Sbjct: 221 MQRRIADELIGEFIVNLPDEFNNPSSADYQTVHIRGFKFVISPAVINGFLGNIVDIDCSP 280

Query: 61  SCPTIEVLANVLSRGTLSTWPVNGIPAAALNVKYAILHKIDIANWFSSSHALSIYA 117
           SCPT EVL  VLS GTLSTWPVNGIPA AL+VKYAILHKI IANWF SSHA S+ A
Sbjct: 281 SCPTTEVLVAVLSGGTLSTWPVNGIPAVALSVKYAILHKIGIANWFPSSHASSVSA 336

The following BLAST results are available for this feature:
BLAST of MELO3C029235 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0066164.18.4e-4986.96gag-pol polyprotein [Cucumis melo var. makuwa] >TYK15206.1 gag-pol polyprotein [... [more]
XP_008463184.18.4e-4986.96PREDICTED: uncharacterized protein LOC103501393 [Cucumis melo][more]
KAA0048225.18.4e-4986.21uncharacterized protein E6C27_scaffold63G001400 [Cucumis melo var. makuwa][more]
TYK08029.18.4e-4986.21uncharacterized protein E5676_scaffold265G001750 [Cucumis melo var. makuwa][more]
XP_008451642.11.4e-4885.34PREDICTED: uncharacterized protein LOC103492875 [Cucumis melo][more]
BLAST of MELO3C029235 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C029235 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3CXU04.1e-4986.96Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold790G... [more]
A0A5D3CCI44.1e-4986.21Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7U3J84.1e-4986.21Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A1S3CIL54.1e-4986.96uncharacterized protein LOC103501393 OS=Cucumis melo OX=3656 GN=LOC103501393 PE=... [more]
A0A5A7UAL16.9e-4986.21Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
BLAST of MELO3C029235 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C029235.1MELO3C029235.1mRNA