MELO3C029217 (gene) Melon (DHL92) v4

Overview
NameMELO3C029217
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionUnknown protein
Locationchr01: 30122782 .. 30123024 (-)
RNA-Seq ExpressionMELO3C029217
SyntenyMELO3C029217
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGAGAATACGTGCACAACGAGGTGCTCAACCATTATCGAAACAAGCCCATCCAAATATATCAACTCGACATCTCGCTTTCACTCTTTGCCTAACATTGGGGCCAGGCATCCTGTCAATTCCGAGCAAACCATTAGACCAAGAAGGAAGTCATCGTAAGACATCTTGTATCGCCACGGACAAGTACGCCGAGAACACGGTCACCACGAGGTGGAAGCATTATCCAAGCAAGCCCATCTAA

mRNA sequence

ATGTCGAGAATACGTGCACAACGAGGTGCTCAACCATTATCGAAACAAGCCCATCCAAATATATCAACTCGACATCTCGCTTTCACTCTTTGCCTAACATTGGGGCCAGGCATCCTGTCAATTCCGAGCAAACCATTAGACCAAGAAGGAAGTCATCGTAAGACATCTTGTATCGCCACGGACAAGTACGCCGAGAACACGGTCACCACGAGGTGGAAGCATTATCCAAGCAAGCCCATCTAA

Coding sequence (CDS)

ATGTCGAGAATACGTGCACAACGAGGTGCTCAACCATTATCGAAACAAGCCCATCCAAATATATCAACTCGACATCTCGCTTTCACTCTTTGCCTAACATTGGGGCCAGGCATCCTGTCAATTCCGAGCAAACCATTAGACCAAGAAGGAAGTCATCGTAAGACATCTTGTATCGCCACGGACAAGTACGCCGAGAACACGGTCACCACGAGGTGGAAGCATTATCCAAGCAAGCCCATCTAA

Protein sequence

MSRIRAQRGAQPLSKQAHPNISTRHLAFTLCLTLGPGILSIPSKPLDQEGSHRKTSCIATDKYAENTVTTRWKHYPSKPI
Homology
[Close]
BLAST of MELO3C029217 vs. NCBI nr
Match: TYK21002.1 (hypothetical protein E5676_scaffold328G00310 [Cucumis melo var. makuwa])

HSP 1 Score: 104.4 bits (259), Expect = 4.7e-19
Identity = 51/70 (72.86%), Postives = 56/70 (80.00%), Query Frame = 0 

Query: 11  QPLSKQAHPNISTRHLAFTLCLTLGPGILSIPSKPLDQEGSHRKTSCIATDKYAENTVTT 70
           Q LSKQA+P+ STRH A TL LT G  I SIP+KP  Q   +RKTSCIATDKYAENT+TT
Sbjct: 158 QALSKQAYPSTSTRHHALTLLLTKGTRIPSIPTKPYHQARINRKTSCIATDKYAENTLTT 217

Query: 71  RWKHYPSKPI 81
           RWKHYPSKPI
Sbjct: 218 RWKHYPSKPI 227

[Close]
BLAST of MELO3C029217 vs. NCBI nr
Match: KAA0057592.1 (hypothetical protein E6C27_scaffold497G00670 [Cucumis melo var. makuwa])

HSP 1 Score: 104.4 bits (259), Expect = 4.7e-19
Identity = 51/70 (72.86%), Postives = 56/70 (80.00%), Query Frame = 0 

Query: 11  QPLSKQAHPNISTRHLAFTLCLTLGPGILSIPSKPLDQEGSHRKTSCIATDKYAENTVTT 70
           Q LSKQA+P+ STRH A TL LT G  I SIP+KP  Q   +RKTSCIATDKYAENT+TT
Sbjct: 256 QALSKQAYPSTSTRHHALTLLLTKGTRIPSIPTKPYHQARINRKTSCIATDKYAENTLTT 315

Query: 71  RWKHYPSKPI 81
           RWKHYPSKPI
Sbjct: 316 RWKHYPSKPI 325

[Close]
BLAST of MELO3C029217 vs. NCBI nr
Match: KAE8637544.1 (hypothetical protein CSA_017400 [Cucumis sativus])

HSP 1 Score: 53.5 bits (127), Expect = 9.6e-04
Identity = 32/75 (42.67%), Postives = 42/75 (56.00%), Query Frame = 0 

Query: 6   AQRGAQPLSKQAHPNISTRHLAFTLCLTLGPGILSIPSKPLDQEGSHRKTSCIATDKYAE 65
           A    Q  SKQA P+ STRH A T     G     IP+KP  ++ +  + S I  +K A+
Sbjct: 275 AHNKVQASSKQARPSTSTRHPALTPTRRWG---TDIPTKPSIKQEAITRPSRILKNKQAQ 334

Query: 66  NTVTTRWKHYPSKPI 81
            T TT+ KH+PSKPI
Sbjct: 335 TTPTTKCKHHPSKPI 346

[Close]
BLAST of MELO3C029217 vs. ExPASy TrEMBL
Match: A0A5A7UP03 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold497G00670 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 2.3e-19
Identity = 51/70 (72.86%), Postives = 56/70 (80.00%), Query Frame = 0 

Query: 11  QPLSKQAHPNISTRHLAFTLCLTLGPGILSIPSKPLDQEGSHRKTSCIATDKYAENTVTT 70
           Q LSKQA+P+ STRH A TL LT G  I SIP+KP  Q   +RKTSCIATDKYAENT+TT
Sbjct: 256 QALSKQAYPSTSTRHHALTLLLTKGTRIPSIPTKPYHQARINRKTSCIATDKYAENTLTT 315

Query: 71  RWKHYPSKPI 81
           RWKHYPSKPI
Sbjct: 316 RWKHYPSKPI 325

[Close]
BLAST of MELO3C029217 vs. ExPASy TrEMBL
Match: A0A5D3DBP5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold328G00310 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 2.3e-19
Identity = 51/70 (72.86%), Postives = 56/70 (80.00%), Query Frame = 0 

Query: 11  QPLSKQAHPNISTRHLAFTLCLTLGPGILSIPSKPLDQEGSHRKTSCIATDKYAENTVTT 70
           Q LSKQA+P+ STRH A TL LT G  I SIP+KP  Q   +RKTSCIATDKYAENT+TT
Sbjct: 158 QALSKQAYPSTSTRHHALTLLLTKGTRIPSIPTKPYHQARINRKTSCIATDKYAENTLTT 217

Query: 71  RWKHYPSKPI 81
           RWKHYPSKPI
Sbjct: 218 RWKHYPSKPI 227

The following BLAST results are available for this feature:
BLAST of MELO3C029217 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK21002.14.7e-1972.86hypothetical protein E5676_scaffold328G00310 [Cucumis melo var. makuwa][more]
KAA0057592.14.7e-1972.86hypothetical protein E6C27_scaffold497G00670 [Cucumis melo var. makuwa][more]
KAE8637544.19.6e-0442.67hypothetical protein CSA_017400 [Cucumis sativus][more]
BLAST of MELO3C029217 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C029217 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7UP032.3e-1972.86Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3DBP52.3e-1972.86Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of MELO3C029217 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C029217.1MELO3C029217.1mRNA