MELO3C029207 (gene) Melon (DHL92) v4

Overview


Name	MELO3C029207
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Retrotransposon protein
Location	chr01: 16610936 .. 16613234 (-)
RNA-Seq Expression	MELO3C029207
Synteny	MELO3C029207

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACAACAATAAGCGTCTCCCACATACATCGTCCGATACACGCCATAGAATTAGGGAGCTTGCGTACTTTCGCATGATACACGAGTCAGATCTTGTGTGTCGGCAGAGCACGCGGATGGACAGGCGAACATTCGCAATTCTATGCCATTTACTTAGAAATGTGGCTGGTCTTTCGTCGACTGAGATTGTCGATGTTGAGGAAATGGTAGCAATGTTCTTGCACGTCCTTGCTCATGACGTAAAGAACCGCGTCATCCAACGGGAATTTGTACTGTCTGGTGAGACAGTATCTCGACATTTTAACATCGTATTGTTGGCTGTTGTTCGACTGTACGAGGAGTTGATAAAGAGACCTGTTCTGGTAACAGATAACTGCAATGATCAACGTTGGAAGTGTTTCAAGGTGGACATCATAGAAGTTCACTGTATTTGACCTTTACGTACGTCGCACTTATTTCAGCGTCTTTATTTGAGCCTGCAGAATTGCCTTGGCGCGTTAGACGGGACGTACATAAAGGTCAACGTCCCCGTAGGAGATCGGCCTACATTCAGAACGCGTAAGGGCGAAATTACAAACGTTCTGGGAGTGTGTGACACGAAAGGGGATTTCGTTTATGTCCTGGCCGGTTGGGAAGGATCCGCAGCAGACTCGCGGATCCTACGTGATGCCTTTTCACGAGAAAATGGACTACAAGTGCCAAAAGGGTATATCTTCTTTATAATAAAACATCGTCGCTTCCTACTTACCTATTTAAAGGTCTTAAACGAATGATTTAATAACAGGATATTATTATCTGTGCGATGCGGGATATCCCAACGCGGAGGGATTTCTCGCCCCATACAGAGGCCAGTGGTACCATTTGCAAGAGTGGTGTGGTGCTGCAAATGCGCCAACAAATCCAAAGGAGTACTTCAACATGAAGCACTCCTTGGCAAGGAATGTCATTGAGCCCGCGTTCGGTGTTCTTAAGGGTCGTTGGGCCATTCTTCGTGGGAAGTCGTACTATCCCCTGCAAGTCCAGTGTCGCACCATACTAGCATGTGTCTTGCTTCACAATTTGATCAACAGGGAAATGACATATTGCGAGCACGTTGACGACGTAGACGAGGGGGACTCCACGTACACGACGACCACCGCTTCAAAAGACATTCACTACATTGAGACAACAAACGAGTGGTCTCAGTGGCGCGACGAACTAGCCGAATCGATGTTCACTGATTGGTAGTTGCGTAACGCTTAGATAAGACAATTTTACATTACAAGTTTCGATTGTAAGGTTGAAATTCTACCATGTCTAATATGTACTGTAAAAAGTAATATCGGGTGTTGCATATGAAATGTACGCATGCCATGAATTTTTATCATGTCTTTTCTTTTTAACTGTTAAATTGTGAAATTACTAACGTACTCCATGTATTTTTTCTAATTTGTCATTCTCAGTATGTCAACCTCAAATCGTGCCCCAAGACATGTCTGGACGAAGGAGGAGGAGGGTACTCTTGTGGAATGTTTAATGGAGTTGGTGTCAATAGGGGGATGGAAATCAGATAATGGTACGTTCCGCCCAGGTTACCTTGCGCAGTTGGTACGCATGATGGCGGAGAAACTACCTGGATGTCAGATCCGAGCAACGACTGTAATTGATTGTAGAATTAAGACACTGAAGCGAATATTCCAGGTCATTGTCGAAATGCGGGGGCCAGCGTACAGTGGCTTTGGGTGGAACGATGAAGAGAAATGTATCATTGCAGAGAAAGAATTATTTGATAATTGGGTTAGAGTAAGGAAAATAATATAAACGTCACACAACGTTCACAATGTACATTTACTTAACAATTTTTCAATCAGTACTCATACGTAATATTTTTTTTCCCGCAGTCGTATCCTGTAGCGAAGGGACTCCTGAACAAACCATTCCCGTATTACGACGAACTTACATATGTCTTCGGTTGCGATAGGGCGACGGGTCGGTTCGCTGAGACATTCGCCGACGTCGGGTCTAACGAGCTTGGTGGCGAATATGACAGATTTTATATGGGGGATGGAAACGAGGAGTTCCCGTCCGTGTACAGCCAGGGGATTGACCTCTCGCAGAACGATGTACGTGCATCCTGACCTTCTCGCACTTCAGAGGGTAGGACCGGATTGAGTGGATCCAAGAGGAAGAGGGAAAGTCAGCGAGACTTCGATGTTGAAACGATACATCTGGCGCTCGACCAAACAAACGAGCAACTCAGGCAGATTGCGGAGTGGCCTGCACGCACCCTTGCAAATGACAACCATGTGTGCACGAAAT

mRNA sequence

ATGAACAACAATAAGCGTCTCCCACATACATCGTCCGATACACGCCATAGAATTAGGGAGCTTGCGTACTTTCGCATGATACACGAGTCAGATCTTGTGTGTCGGCAGAGCACGCGGATGGACAGGCGAACATTCGCAATTCTATGCCATTTACTTAGAAATGTGGCTGGTCTTTCGTCGACTGAGATTGTCGATGTTGAGGAAATGGTAGCAATGTTCTTGCACGTCCTTGCTCATGACGTAAAGAACCGCGTCATCCAACGGGAATTTGTACTGTCTGGTGAGACAGTATCTCGACATTTTAACATCGTATTGTTGGCTGTTGTTCGACTGTACGAGGAGTTGATAAAGAGACCTGTTCTGTATGTCAACCTCAAATCGTGCCCCAAGACATGTCTGGACGAAGGAGGAGGAGGGTACTCTTGTGGAATGTTTAATGGAGTTGGTTTGGTACGCATGATGGCGGAGAAACTACCTGGATGTCAGATCCGAGCAACGACTGTAATTGATTGTAGAATTAAGACACTGAAGCGAATATTCCAGGTCATTGTCGAAATGCGGGGGCCAGCGTACAGTGGCTTTGGGTGGAACGATGAAGAGAAATGTATCATTGCAGAGAAAGAATTATTTGATAATTGGGTTAGATCGTATCCTGTAGCGAAGGGACTCCTGAACAAACCATTCCCGTATTACGACGAACTTACATATGTCTTCGGTTGCGATAGGGCGACGGGTCGGTTCGCTGAGACATTCGCCGACGTCGGGTCTAACGAGCTTGGTGGCGAATATGACAGATTTTATATGGGGGATGGAAACGAGGAGTTCCCGTCCGTGTACAGCCAGGGGATTGACCTCTCGCAGAACGATGTACGTGCATCCTGACCTTCTCGCACTTCAGAGGGTAGGACCGGATTGAGTGGATCCAAGAGGAAGAGGGAAAGTCAGCGAGACTTCGATGTTGAAACGATACATCTGGCGCTCGACCAAACAAACGAGCAACTCAGGCAGATTGCGGAGTGGCCTGCACGCACCCTTGCAAATGACAACCATGTGTGCACGAAAT

Coding sequence (CDS)

ATGAACAACAATAAGCGTCTCCCACATACATCGTCCGATACACGCCATAGAATTAGGGAGCTTGCGTACTTTCGCATGATACACGAGTCAGATCTTGTGTGTCGGCAGAGCACGCGGATGGACAGGCGAACATTCGCAATTCTATGCCATTTACTTAGAAATGTGGCTGGTCTTTCGTCGACTGAGATTGTCGATGTTGAGGAAATGGTAGCAATGTTCTTGCACGTCCTTGCTCATGACGTAAAGAACCGCGTCATCCAACGGGAATTTGTACTGTCTGGTGAGACAGTATCTCGACATTTTAACATCGTATTGTTGGCTGTTGTTCGACTGTACGAGGAGTTGATAAAGAGACCTGTTCTGTATGTCAACCTCAAATCGTGCCCCAAGACATGTCTGGACGAAGGAGGAGGAGGGTACTCTTGTGGAATGTTTAATGGAGTTGGTTTGGTACGCATGATGGCGGAGAAACTACCTGGATGTCAGATCCGAGCAACGACTGTAATTGATTGTAGAATTAAGACACTGAAGCGAATATTCCAGGTCATTGTCGAAATGCGGGGGCCAGCGTACAGTGGCTTTGGGTGGAACGATGAAGAGAAATGTATCATTGCAGAGAAAGAATTATTTGATAATTGGGTTAGATCGTATCCTGTAGCGAAGGGACTCCTGAACAAACCATTCCCGTATTACGACGAACTTACATATGTCTTCGGTTGCGATAGGGCGACGGGTCGGTTCGCTGAGACATTCGCCGACGTCGGGTCTAACGAGCTTGGTGGCGAATATGACAGATTTTATATGGGGGATGGAAACGAGGAGTTCCCGTCCGTGTACAGCCAGGGGATTGACCTCTCGCAGAACGATGTACGTGCATCCTGA

Protein sequence

MNNNKRLPHTSSDTRHRIRELAYFRMIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVLSGETVSRHFNIVLLAVVRLYEELIKRPVLYVNLKSCPKTCLDEGGGGYSCGMFNGVGLVRMMAEKLPGCQIRATTVIDCRIKTLKRIFQVIVEMRGPAYSGFGWNDEEKCIIAEKELFDNWVRSYPVAKGLLNKPFPYYDELTYVFGCDRATGRFAETFADVGSNELGGEYDRFYMGDGNEEFPSVYSQGIDLSQNDVRAS

Homology

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BLAST of MELO3C029207 vs. NCBI nr
Match: TYK05796.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 385.6 bits (989), Expect = 3.9e-103
Identity = 210/333 (63.06%), Postives = 226/333 (67.87%), Query Frame = 0


Query: 1   MNNNKRLPHTSSDTRHRIRELAYFRMIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSS 60
           MN+N+R+ +T SDT  RIR+LAYFRMIHESDLVCRQSTRMDRRTFAILCHLL+ V+GLSS
Sbjct: 1   MNDNRRITYTPSDTLRRIRQLAYFRMIHESDLVCRQSTRMDRRTFAILCHLLQTVSGLSS 60

Query: 61  TEIVDVEEMVAMFLHVLAHDVKNRVIQREFVLSGETVSRHFNIVLLAVVRLYEELIKRPV 120
           TEIVDVEEMVAMFLHVLAHD+KN VIQREFV S ETVSRHFN+VLL VVRLYEELIKRPV
Sbjct: 61  TEIVDVEEMVAMFLHVLAHDMKNSVIQREFVRSDETVSRHFNLVLLTVVRLYEELIKRPV 120

Query: 121 -----------------------------------------------LYVNLKSCPKTCL 180
                                                           YVNLK  P+TCL
Sbjct: 121 PVTNNCKDQRWQCFENCLGALDGTYIKVNVPATDRPTFRTRKGEIATNYVNLKPYPETCL 180

Query: 181 DEGGGGYSCGMFNGVGLVRMMAEKLPGCQIRATTVIDCRIKTLKRIFQVIVEMRGPAYSG 240
           DEGGGG+SCG+FN VG                       +         I EM GPA SG
Sbjct: 181 DEGGGGHSCGVFNEVG-----------------------VNGGGNWIMAITEMWGPACSG 240

Query: 241 FGWNDEEKCIIAEKELFDNWVRSYPVAKGLLNKPFPYYDELTYVFGCDRATGRFAETFAD 287
           FGWNDEEKCII EKELFDNWVRS+P  KGLLNKPFPYYDELTYVFG DRATG+F ETF +
Sbjct: 241 FGWNDEEKCIITEKELFDNWVRSHPATKGLLNKPFPYYDELTYVFGRDRATGQFVETFVN 300

[Close]

BLAST of MELO3C029207 vs. NCBI nr
Match: KAA0053666.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK00835.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 385.2 bits (988), Expect = 5.1e-103
Identity = 219/388 (56.44%), Postives = 239/388 (61.60%), Query Frame = 0


Query: 1   MNNNKRLPHTSSDTRHRIRELAYFRMIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSS 60
           MNNNKRLPHT  DTRHRIRE AYF MIHESDLVCRQST+M+RRTFAILCHL RNVAGLSS
Sbjct: 1   MNNNKRLPHTPPDTRHRIREFAYFCMIHESDLVCRQSTQMNRRTFAILCHLPRNVAGLSS 60

Query: 61  TEIVDVEEMVAMFLHVLAHDVKNRV-------------------------IQREFVLSGE 120
           TEI+DV+EMVAMFLHVLAHDV   V                         + +E  L  E
Sbjct: 61  TEIIDVDEMVAMFLHVLAHDVNKDVQEPHHPTGICTNCLGALDGTYIKVNVPQEIGLHSE 120

Query: 121 TVSRHF-----------NIVLLA--------------VVRLYEEL--------------- 180
            V                I  ++              V+R ++++               
Sbjct: 121 RVKGKLPQTFWGSVTRKGISFMSSPVGKNPQQTRGSYVMRFHKKMDYKCQRDIIICACGI 180

Query: 181 ---------IKRPVL-----------------YVNLKSCPKTCLDEGGGGYSCGMFNGVG 240
                    ++RP +                 YVNLKSCP+TCLDEG GG SCGMFNG  
Sbjct: 181 SKRGGVSRPVQRPAVPFARVKWCCKCANKCKGYVNLKSCPETCLDEGEGGDSCGMFNGAS 240

Query: 241 -------------------LVRMMAEKLPGCQIRATTVIDCRIKTLKRIFQVIVEMRGPA 279
                              LVRMMAEKLPGCQ+RATTVID RIKTLKR FQ I EMR PA
Sbjct: 241 VNGRWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDYRIKTLKRTFQAIAEMRDPA 300

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BLAST of MELO3C029207 vs. NCBI nr
Match: TYK02619.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 373.6 bits (958), Expect = 1.5e-99
Identity = 215/370 (58.11%), Postives = 231/370 (62.43%), Query Frame = 0


Query: 1   MNNNKRLPHTSSDTRHRIRELAYFRMIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSS 60
           MNNNKRLPHT SDTRHRIRELAYF MIHESDLVC+QSTRMDRRTFAILCHLLRNVAGLSS
Sbjct: 1   MNNNKRLPHTPSDTRHRIRELAYFCMIHESDLVCQQSTRMDRRTFAILCHLLRNVAGLSS 60

Query: 61  TEIVDVEEMVAMFLHVLAHDVKNRVIQREFVLSGETVSRHFNIVLLA----VVRLYEELI 120
           TEIVDVEEMVAMFLHVLAHDVKN VIQREF   G     +  + + A      R  +  I
Sbjct: 61  TEIVDVEEMVAMFLHVLAHDVKNCVIQREFNCLGALDGTYIKVNVPAGDRPTFRTRKGEI 120

Query: 121 KRPVLYV--------------------------------NLKSCPKTCLDEGGGGYSCGM 180
              VL V                                   +     + + G  Y    
Sbjct: 121 ATNVLGVCDTKGDFVYVLAGWEGSAADSRILRYYYLCDAGYPNAEGFLVQDRGQRYHLQE 180

Query: 181 FNGVG-----------------------------------------LVRMMAEKLPGCQI 240
           + G                                           LVRMMAEKLPGCQ+
Sbjct: 181 WRGAANAPTNAKEYFNTKHSSTRNVIECAFGVLKDNDTFRPGYLAQLVRMMAEKLPGCQV 240

Query: 241 RATTVIDCRIKTLKRIFQVIVEMRGPAYSGFGWNDEEKCIIAEKELFDNWVRSYPVAKGL 294
           RATTVIDCRIKTLKR FQ I EM+GPA SG GWNDEEKCII +KELFDNWVRS+P AKGL
Sbjct: 241 RATTVIDCRIKTLKRTFQAIAEMQGPACSGSGWNDEEKCIIGKKELFDNWVRSHPAAKGL 300

[Close]

BLAST of MELO3C029207 vs. NCBI nr
Match: KAA0045638.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 371.7 bits (953), Expect = 5.8e-99
Identity = 214/370 (57.84%), Postives = 229/370 (61.89%), Query Frame = 0


Query: 1   MNNNKRLPHTSSDTRHRIRELAYFRMIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSS 60
           MNNNKRLPHT  DTRHRIRELAYFRMIHESDLVCRQSTRMDRRTFAILCHLL NV GLSS
Sbjct: 1   MNNNKRLPHTPPDTRHRIRELAYFRMIHESDLVCRQSTRMDRRTFAILCHLLINVVGLSS 60

Query: 61  TEIVDVEEMVAMFLHVLAHDVKNRVIQREFVLSGETVSRHFNIVLLA----VVRLYEELI 120
           TEIVDVEEMVAMFLHVLAHDVKN VIQREF   G     +  + + A      R  +  I
Sbjct: 61  TEIVDVEEMVAMFLHVLAHDVKNCVIQREFNCLGALDGTYIKVNVPAGDRPTFRTRKGEI 120

Query: 121 KRPVLYV--------------------------------NLKSCPKTCLDEGGGGYSCGM 180
              VL V                                   +     + + G  Y    
Sbjct: 121 ATNVLGVCDTKGDFVYVLAGWEGSAADSRILRYYYLCDAGYPNAEGFLVQDRGQRYHLQE 180

Query: 181 FNGVG-----------------------------------------LVRMMAEKLPGCQI 240
           + G                                           LVRMMAEKLPGCQ+
Sbjct: 181 WRGAANAPTNAKEYFNTKHSSTRNVIECAFGVLKDNDTFRPGYLAQLVRMMAEKLPGCQV 240

Query: 241 RATTVIDCRIKTLKRIFQVIVEMRGPAYSGFGWNDEEKCIIAEKELFDNWVRSYPVAKGL 294
           RATTVIDCRIKTLKR FQ I EM+GPA SG GWNDEEKCII +KELFDNWVRS+P AKGL
Sbjct: 241 RATTVIDCRIKTLKRTFQAIAEMQGPACSGSGWNDEEKCIIGKKELFDNWVRSHPAAKGL 300

[Close]

BLAST of MELO3C029207 vs. NCBI nr
Match: ADN33754.1 (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 347.4 bits (890), Expect = 1.2e-91
Identity = 230/508 (45.28%), Postives = 241/508 (47.44%), Query Frame = 0


Query: 26  MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 85
           MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV
Sbjct: 1   MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 60

Query: 86  IQREFVLSGETVSRHFNIVLLAVVRLYEELIKRPV------------------------- 145
           IQ+EFV SGETVSRHFNIVLLAV+RLYEELIKRPV                         
Sbjct: 61  IQQEFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFENCLGALDGTY 120

Query: 146 ------------------------------------------------------------ 205
                                                                       
Sbjct: 121 IKVNVPAGDRPTFRTRKGEIATNVLGVCDMKGDFVYVLAGWEGSAADSRILRDAISQENG 180

Query: 206 ----------------------------------------------LYVNLKSCP----- 265
                                                          Y N+K        
Sbjct: 181 LQVPKGYYYLCDAGYPNAEGFLAPYKGQRYHLQEWRGAANAPTNAKEYFNMKHSSARNVI 240

Query: 266 --------------------------KTCL----------------------DEGG---- 294
                                     +T L                      DEG     
Sbjct: 241 ERAFGVLKGRWTILRGKSYYPLQVQCRTILACTLLHNLINREMTYCNDVEDEDEGDSTYA 300

[Close]

BLAST of MELO3C029207 vs. ExPASy TrEMBL
Match: A0A5D3C620 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G003010 PE=4 SV=1)

HSP 1 Score: 385.6 bits (989), Expect = 1.9e-103
Identity = 210/333 (63.06%), Postives = 226/333 (67.87%), Query Frame = 0


Query: 1   MNNNKRLPHTSSDTRHRIRELAYFRMIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSS 60
           MN+N+R+ +T SDT  RIR+LAYFRMIHESDLVCRQSTRMDRRTFAILCHLL+ V+GLSS
Sbjct: 1   MNDNRRITYTPSDTLRRIRQLAYFRMIHESDLVCRQSTRMDRRTFAILCHLLQTVSGLSS 60

Query: 61  TEIVDVEEMVAMFLHVLAHDVKNRVIQREFVLSGETVSRHFNIVLLAVVRLYEELIKRPV 120
           TEIVDVEEMVAMFLHVLAHD+KN VIQREFV S ETVSRHFN+VLL VVRLYEELIKRPV
Sbjct: 61  TEIVDVEEMVAMFLHVLAHDMKNSVIQREFVRSDETVSRHFNLVLLTVVRLYEELIKRPV 120

Query: 121 -----------------------------------------------LYVNLKSCPKTCL 180
                                                           YVNLK  P+TCL
Sbjct: 121 PVTNNCKDQRWQCFENCLGALDGTYIKVNVPATDRPTFRTRKGEIATNYVNLKPYPETCL 180

Query: 181 DEGGGGYSCGMFNGVGLVRMMAEKLPGCQIRATTVIDCRIKTLKRIFQVIVEMRGPAYSG 240
           DEGGGG+SCG+FN VG                       +         I EM GPA SG
Sbjct: 181 DEGGGGHSCGVFNEVG-----------------------VNGGGNWIMAITEMWGPACSG 240

Query: 241 FGWNDEEKCIIAEKELFDNWVRSYPVAKGLLNKPFPYYDELTYVFGCDRATGRFAETFAD 287
           FGWNDEEKCII EKELFDNWVRS+P  KGLLNKPFPYYDELTYVFG DRATG+F ETF +
Sbjct: 241 FGWNDEEKCIITEKELFDNWVRSHPATKGLLNKPFPYYDELTYVFGRDRATGQFVETFVN 300

[Close]

BLAST of MELO3C029207 vs. ExPASy TrEMBL
Match: A0A5A7UHF7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1545G00380 PE=4 SV=1)

HSP 1 Score: 385.2 bits (988), Expect = 2.5e-103
Identity = 219/388 (56.44%), Postives = 239/388 (61.60%), Query Frame = 0


Query: 1   MNNNKRLPHTSSDTRHRIRELAYFRMIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSS 60
           MNNNKRLPHT  DTRHRIRE AYF MIHESDLVCRQST+M+RRTFAILCHL RNVAGLSS
Sbjct: 1   MNNNKRLPHTPPDTRHRIREFAYFCMIHESDLVCRQSTQMNRRTFAILCHLPRNVAGLSS 60

Query: 61  TEIVDVEEMVAMFLHVLAHDVKNRV-------------------------IQREFVLSGE 120
           TEI+DV+EMVAMFLHVLAHDV   V                         + +E  L  E
Sbjct: 61  TEIIDVDEMVAMFLHVLAHDVNKDVQEPHHPTGICTNCLGALDGTYIKVNVPQEIGLHSE 120

Query: 121 TVSRHF-----------NIVLLA--------------VVRLYEEL--------------- 180
            V                I  ++              V+R ++++               
Sbjct: 121 RVKGKLPQTFWGSVTRKGISFMSSPVGKNPQQTRGSYVMRFHKKMDYKCQRDIIICACGI 180

Query: 181 ---------IKRPVL-----------------YVNLKSCPKTCLDEGGGGYSCGMFNGVG 240
                    ++RP +                 YVNLKSCP+TCLDEG GG SCGMFNG  
Sbjct: 181 SKRGGVSRPVQRPAVPFARVKWCCKCANKCKGYVNLKSCPETCLDEGEGGDSCGMFNGAS 240

Query: 241 -------------------LVRMMAEKLPGCQIRATTVIDCRIKTLKRIFQVIVEMRGPA 279
                              LVRMMAEKLPGCQ+RATTVID RIKTLKR FQ I EMR PA
Sbjct: 241 VNGRWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDYRIKTLKRTFQAIAEMRDPA 300

[Close]

BLAST of MELO3C029207 vs. ExPASy TrEMBL
Match: A0A5D3BWV2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold280G00270 PE=3 SV=1)

HSP 1 Score: 373.6 bits (958), Expect = 7.4e-100
Identity = 215/370 (58.11%), Postives = 231/370 (62.43%), Query Frame = 0


Query: 1   MNNNKRLPHTSSDTRHRIRELAYFRMIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSS 60
           MNNNKRLPHT SDTRHRIRELAYF MIHESDLVC+QSTRMDRRTFAILCHLLRNVAGLSS
Sbjct: 1   MNNNKRLPHTPSDTRHRIRELAYFCMIHESDLVCQQSTRMDRRTFAILCHLLRNVAGLSS 60

Query: 61  TEIVDVEEMVAMFLHVLAHDVKNRVIQREFVLSGETVSRHFNIVLLA----VVRLYEELI 120
           TEIVDVEEMVAMFLHVLAHDVKN VIQREF   G     +  + + A      R  +  I
Sbjct: 61  TEIVDVEEMVAMFLHVLAHDVKNCVIQREFNCLGALDGTYIKVNVPAGDRPTFRTRKGEI 120

Query: 121 KRPVLYV--------------------------------NLKSCPKTCLDEGGGGYSCGM 180
              VL V                                   +     + + G  Y    
Sbjct: 121 ATNVLGVCDTKGDFVYVLAGWEGSAADSRILRYYYLCDAGYPNAEGFLVQDRGQRYHLQE 180

Query: 181 FNGVG-----------------------------------------LVRMMAEKLPGCQI 240
           + G                                           LVRMMAEKLPGCQ+
Sbjct: 181 WRGAANAPTNAKEYFNTKHSSTRNVIECAFGVLKDNDTFRPGYLAQLVRMMAEKLPGCQV 240

Query: 241 RATTVIDCRIKTLKRIFQVIVEMRGPAYSGFGWNDEEKCIIAEKELFDNWVRSYPVAKGL 294
           RATTVIDCRIKTLKR FQ I EM+GPA SG GWNDEEKCII +KELFDNWVRS+P AKGL
Sbjct: 241 RATTVIDCRIKTLKRTFQAIAEMQGPACSGSGWNDEEKCIIGKKELFDNWVRSHPAAKGL 300

[Close]

BLAST of MELO3C029207 vs. ExPASy TrEMBL
Match: A0A5A7TS15 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold243G001490 PE=3 SV=1)

HSP 1 Score: 371.7 bits (953), Expect = 2.8e-99
Identity = 214/370 (57.84%), Postives = 229/370 (61.89%), Query Frame = 0


Query: 1   MNNNKRLPHTSSDTRHRIRELAYFRMIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSS 60
           MNNNKRLPHT  DTRHRIRELAYFRMIHESDLVCRQSTRMDRRTFAILCHLL NV GLSS
Sbjct: 1   MNNNKRLPHTPPDTRHRIRELAYFRMIHESDLVCRQSTRMDRRTFAILCHLLINVVGLSS 60

Query: 61  TEIVDVEEMVAMFLHVLAHDVKNRVIQREFVLSGETVSRHFNIVLLA----VVRLYEELI 120
           TEIVDVEEMVAMFLHVLAHDVKN VIQREF   G     +  + + A      R  +  I
Sbjct: 61  TEIVDVEEMVAMFLHVLAHDVKNCVIQREFNCLGALDGTYIKVNVPAGDRPTFRTRKGEI 120

Query: 121 KRPVLYV--------------------------------NLKSCPKTCLDEGGGGYSCGM 180
              VL V                                   +     + + G  Y    
Sbjct: 121 ATNVLGVCDTKGDFVYVLAGWEGSAADSRILRYYYLCDAGYPNAEGFLVQDRGQRYHLQE 180

Query: 181 FNGVG-----------------------------------------LVRMMAEKLPGCQI 240
           + G                                           LVRMMAEKLPGCQ+
Sbjct: 181 WRGAANAPTNAKEYFNTKHSSTRNVIECAFGVLKDNDTFRPGYLAQLVRMMAEKLPGCQV 240

Query: 241 RATTVIDCRIKTLKRIFQVIVEMRGPAYSGFGWNDEEKCIIAEKELFDNWVRSYPVAKGL 294
           RATTVIDCRIKTLKR FQ I EM+GPA SG GWNDEEKCII +KELFDNWVRS+P AKGL
Sbjct: 241 RATTVIDCRIKTLKRTFQAIAEMQGPACSGSGWNDEEKCIIGKKELFDNWVRSHPAAKGL 300

[Close]

BLAST of MELO3C029207 vs. ExPASy TrEMBL
Match: E5GBB2 (Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1)

HSP 1 Score: 347.4 bits (890), Expect = 5.7e-92
Identity = 230/508 (45.28%), Postives = 241/508 (47.44%), Query Frame = 0


Query: 26  MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 85
           MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV
Sbjct: 1   MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 60

Query: 86  IQREFVLSGETVSRHFNIVLLAVVRLYEELIKRPV------------------------- 145
           IQ+EFV SGETVSRHFNIVLLAV+RLYEELIKRPV                         
Sbjct: 61  IQQEFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFENCLGALDGTY 120

Query: 146 ------------------------------------------------------------ 205
                                                                       
Sbjct: 121 IKVNVPAGDRPTFRTRKGEIATNVLGVCDMKGDFVYVLAGWEGSAADSRILRDAISQENG 180

Query: 206 ----------------------------------------------LYVNLKSCP----- 265
                                                          Y N+K        
Sbjct: 181 LQVPKGYYYLCDAGYPNAEGFLAPYKGQRYHLQEWRGAANAPTNAKEYFNMKHSSARNVI 240

Query: 266 --------------------------KTCL----------------------DEGG---- 294
                                     +T L                      DEG     
Sbjct: 241 ERAFGVLKGRWTILRGKSYYPLQVQCRTILACTLLHNLINREMTYCNDVEDEDEGDSTYA 300

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BLAST of MELO3C029207 vs. TAIR 10
Match: AT5G41980.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 66.2 bits (160), Expect = 4.9e-11
Identity = 32/94 (34.04%), Postives = 58/94 (61.70%), Query Frame = 0


Query: 24  FRMIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKN 83
           +++++  +  C ++ RMD+  F  LC LL+    L  T  + +E  +A+FL ++ H+++ 
Sbjct: 32  YQILNGPNEQCFENFRMDKPVFYKLCDLLQTRGLLRHTNRIKIEAQLAIFLFIIGHNLRT 91

Query: 84  RVIQREFVLSGETVSRHFNIVLLAVVRLYEELIK 118
           R +Q  F  SGET+SRHFN VL AV+ + ++  +
Sbjct: 92  RAVQELFCYSGETISRHFNNVLNAVIAISKDFFQ 125

[Close]

BLAST of MELO3C029207 vs. TAIR 10
Match: AT5G28730.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 496 Blast hits to 496 proteins in 68 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 23; Plants - 470; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 50.4 bits (119), Expect = 2.8e-06
Identity = 31/91 (34.07%), Postives = 49/91 (53.85%), Query Frame = 0


Query: 27  IHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVI 86
           I+ +++ C+   RM    F  LC +L    GL S+  + ++E VA+FL + A +   R I
Sbjct: 17  IYSNEVSCQTLIRMSSEAFTQLCEILHGKYGLQSSTNISLDESVAIFLIICASNDTQRDI 76

Query: 87  QREFVLSGETVSRHFNIVLLAVVRLYEELIK 118
              F  + ET+ R F+ VL A+ RL  E I+
Sbjct: 77  ALRFGHAQETIWRKFHDVLKAMERLAVEYIR 107

[Close]

BLAST of MELO3C029207 vs. TAIR 10
Match: AT5G27260.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G29880.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 50.4 bits (119), Expect = 2.8e-06
Identity = 27/82 (32.93%), Postives = 47/82 (57.32%), Query Frame = 0


Query: 172 RIKTLKRIFQVIVEMRGPAYSGFGWNDEEKCIIAEKELFDNWVRSYPVAKGLLNKPFPYY 231
           R+K LK  +Q  ++++  + SGFGW+   K   A  E++ ++++++P  K L    F ++
Sbjct: 73  RMKYLKIQYQSCLDLQRFS-SGFGWDPLTKRFTASDEVWSDYLKAHPNNKQLRYDTFEFF 132

Query: 232 DELTYVFGCDRATGRFAETFAD 254
           DEL  +FG   ATG+ A    D
Sbjct: 133 DELQIIFGEGVATGKNAIGLCD 153

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BLAST of MELO3C029207 vs. TAIR 10
Match: AT2G24960.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 49.3 bits (116), Expect = 6.2e-06
Identity = 21/80 (26.25%), Postives = 45/80 (56.25%), Query Frame = 0


Query: 168 VIDCRIKTLKRIFQVIVEMRGPAYSGFGWNDEEKCIIAEKELFDNWVRSYPVAKGLLNKP 227
           V+  R K L+R++  I  +     +GF W+     +IA+ ++++ +++++P A+    K 
Sbjct: 377 VLKNRYKHLRRLYNDIKFLL--EQNGFSWDARRDMVIADDDIWNTYIQAHPEARSYRVKT 436

Query: 228 FPYYDELTYVFGCDRATGRF 248
            P Y  L ++FG + + GR+
Sbjct: 437 IPSYPNLCFIFGKETSDGRY 454

[Close]

BLAST of MELO3C029207 vs. TAIR 10
Match: AT4G02210.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2); Has 791 Blast hits to 465 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 17; Plants - 748; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink). )

HSP 1 Score: 46.6 bits (109), Expect = 4.0e-05
Identity = 19/72 (26.39%), Postives = 41/72 (56.94%), Query Frame = 0


Query: 168 VIDCRIKTLKRIFQVIVEMRGPAYSGFGWNDEEKCIIAEKELFDNWVRSYPVAKGLLNKP 227
           V+  R K+L+R F  I  +      GF W++E + + A+  ++ ++++++  A+  + +P
Sbjct: 236 VLKNRYKSLRRQFNAIKSIL--RSDGFAWDNERQMVTADNNVWQDYIKAHRDARQFMTRP 295

Query: 228 FPYYDELTYVFG 240
            PYY +L  + G
Sbjct: 296 IPYYKDLCVLCG 305

The following BLAST results are available for this feature:

BLAST of MELO3C029207 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK05796.1	3.9e-103	63.06	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0053666.1	5.1e-103	56.44	retrotransposon protein [Cucumis melo var. makuwa] >TYK00835.1 retrotransposon p...	[more]
TYK02619.1	1.5e-99	58.11	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0045638.1	5.8e-99	57.84	retrotransposon protein [Cucumis melo var. makuwa]	[more]
ADN33754.1	1.2e-91	45.28	retrotransposon protein [Cucumis melo subsp. melo]	[more]

BLAST of MELO3C029207 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C029207 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C620	1.9e-103	63.06	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7UHF7	2.5e-103	56.44	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BWV2	7.4e-100	58.11	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TS15	2.8e-99	57.84	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
E5GBB2	5.7e-92	45.28	Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1	[more]

BLAST of MELO3C029207 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G41980.1	4.9e-11	34.04	CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (Int...	[more]
AT5G28730.1	2.8e-06	34.07	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G27260.1	2.8e-06	32.93	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT2G24960.2	6.2e-06	26.25	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT4G02210.1	4.0e-05	26.39	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR46250	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATED	coord: 150..254
None	No IPR available	PANTHER	PTHR46250:SF3	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN	coord: 150..254

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C029207.1	MELO3C029207.1	mRNA