MELO3C029202 (gene) Melon (DHL92) v4

Overview
NameMELO3C029202
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
Description40s ribosomal protein s22
Locationchr01: 28532177 .. 28532635 (-)
RNA-Seq ExpressionMELO3C029202
SyntenyMELO3C029202
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCAAAACTCCATAGTGGATGCTCAAAACCATATTCAGTAGAAGAAACTAAGAACTTTGCCTCCAACATTCTTCCTTCTTGCTTCTGCATGTTCCATAATTCCAGCAGAAGTTGTCAACACAAAGAATCCAAACTGTCTCGAAGGGAGCAACCTAGCAATCCAACCTTCAATTTCCTTAACACCCACGTCAAAACAAGGATTAATAACCCCACATTTGTTCAGCCTATCGTTGAATTCAAAAACAACTTTTCTAGATCTATGATCATTGACAAACTCAAATTCACCAATATAACTATGCTTCTGCAAACCAGAAGAAACTTGATGATAACTTTGGAAGACAACATGATCATGACCTGTTGTTTCCCATGGTTATTTGCATTGTACATGCTCTTAAGACCATCGTCAAAAGACCAACTCTCACCCTCCTTCCAAATTAAAACTTCAAAGGATTTTTGA

mRNA sequence

ATGTCAAAACTCCATAGTGGATGCTCAAAACCATATTCAGTAGAAGAAACTAAGAACTTTGCCTCCAACATTCTTCCTTCTTGCTTCTGCATGTTCCATAATTCCAGCAGAAGTTGTCAACACAAAGAATCCAAACTGTCTCGAAGGGAGCAACCTAGCAATCCAACCTTCAATTTCCTTAACACCCACGTCAAAACAAGGATTAATAACCCCACATTTGTTCAGCCTATCGTTGAATTCAAAAACAACTTTTCTAGATCTATGATCATTGACAAACTCAAATTCACCAATATAACTATGCTTCTGCAAACCAGAAGAAACTTGATGATAACTTTGGAAGACAACATGATCATGACCTGTTGTTTCCCATGGTTATTTGCATTGTACATGCTCTTAAGACCATCGTCAAAAGACCAACTCTCACCCTCCTTCCAAATTAAAACTTCAAAGGATTTTTGA

Coding sequence (CDS)

ATGTCAAAACTCCATAGTGGATGCTCAAAACCATATTCAGTAGAAGAAACTAAGAACTTTGCCTCCAACATTCTTCCTTCTTGCTTCTGCATGTTCCATAATTCCAGCAGAAGTTGTCAACACAAAGAATCCAAACTGTCTCGAAGGGAGCAACCTAGCAATCCAACCTTCAATTTCCTTAACACCCACGTCAAAACAAGGATTAATAACCCCACATTTGTTCAGCCTATCGTTGAATTCAAAAACAACTTTTCTAGATCTATGATCATTGACAAACTCAAATTCACCAATATAACTATGCTTCTGCAAACCAGAAGAAACTTGATGATAACTTTGGAAGACAACATGATCATGACCTGTTGTTTCCCATGGTTATTTGCATTGTACATGCTCTTAAGACCATCGTCAAAAGACCAACTCTCACCCTCCTTCCAAATTAAAACTTCAAAGGATTTTTGA

Protein sequence

MSKLHSGCSKPYSVEETKNFASNILPSCFCMFHNSSRSCQHKESKLSRREQPSNPTFNFLNTHVKTRINNPTFVQPIVEFKNNFSRSMIIDKLKFTNITMLLQTRRNLMITLEDNMIMTCCFPWLFALYMLLRPSSKDQLSPSFQIKTSKDF
Homology
BLAST of MELO3C029202 vs. NCBI nr
Match: ACJ83878.1 (unknown, partial [Medicago truncatula])

HSP 1 Score: 87.8 bits (216), Expect = 8.7e-14
Identity = 44/72 (61.11%), Postives = 57/72 (79.17%), Query Frame = 0

Query: 31  MFHNSSRSCQHKESKLSRREQPSNPTFNFLNTHVKTRINNPTFVQPIVEFKNNFSRSMII 90
           M HN+SRS Q+  SKLS RE+ S+PTFN L+T +KTR NNPTFVQP ++F N+F RS+II
Sbjct: 1   MIHNTSRSGQNNVSKLSGREKSSSPTFNLLDTDIKTRTNNPTFVQPTIQFNNDFPRSVII 60

Query: 91  DKLKFTNITMLL 103
           + LK +NIT+ L
Sbjct: 61  NILKLSNITVFL 72

BLAST of MELO3C029202 vs. NCBI nr
Match: KAF0722269.1 (hypothetical protein Ae201684_018561 [Aphanomyces euteiches])

HSP 1 Score: 61.6 bits (148), Expect = 6.7e-06
Identity = 30/95 (31.58%), Postives = 56/95 (58.95%), Query Frame = 0

Query: 14  VEETKNFASNILPSCFCMFHNSSRSCQHKESKLSRREQPSNPTFNFLNTHVKTRINNPTF 73
           VEET + A+++L + F + H++ R  QH  S+L+ R+Q  +P FN L   ++   ++  F
Sbjct: 214 VEETNDLATSVLATSFVVVHDAVRGRQHDVSELTGRQQVVDPLFNILELDIEAGRDDTAF 273

Query: 74  VQPIVEFKNNFSRSMIIDKLKFTNITMLLQTRRNL 109
           V    +F N+ + ++++D  KF N+ +LL   + L
Sbjct: 274 VDAAAQFNNDLATTVVVDDFKFANVAVLLHGLQKL 308

BLAST of MELO3C029202 vs. NCBI nr
Match: KND99778.2 (40s ribosomal protein s22 [[Candida] auris])

HSP 1 Score: 59.3 bits (142), Expect = 3.3e-05
Identity = 33/95 (34.74%), Postives = 54/95 (56.84%), Query Frame = 0

Query: 14  VEETKNFASNILPSCFCMFHNSSRSCQHKESKLSRREQPSNPTFNFLNTHVKTRINNPTF 73
           V ET++   N+L S   + H++SR  Q   +K S R+Q   P+ N L+ HV++  N+ T 
Sbjct: 10  VNETQDLTGNMLSSGLLVVHDTSRGGQDDVTKSSGRQQVVGPSLNVLDLHVESWRNDTTL 69

Query: 74  VQPIVEFKNNFSRSMIIDKLKFTNITMLLQTRRNL 109
           VQ   +  NN +RS+++D LK T++ +L      L
Sbjct: 70  VQSTGQSNNNLTRSVVVDVLKLTDVAVLSHNSEEL 104

BLAST of MELO3C029202 vs. NCBI nr
Match: EKG01352.1 (hypothetical protein TCSYLVIO_007646 [Trypanosoma cruzi])

HSP 1 Score: 56.6 bits (135), Expect = 2.1e-04
Identity = 29/95 (30.53%), Postives = 55/95 (57.89%), Query Frame = 0

Query: 14  VEETKNFASNILPSCFCMFHNSSRSCQHKESKLSRREQPSNPTFNFLNTHVKTRINNPTF 73
           +EET+N ++++  + F + H++  S +H ++KL+  +   +P F      VK   +    
Sbjct: 30  IEETENLSTSVAGTGFLVIHDTKGSREHHKAKLTAGKNVLHPLFEVRGGAVKAGADGAAL 89

Query: 74  VQPIVEFKNNFSRSMIIDKLKFTNITMLLQTRRNL 109
           V+  VE  +NF+R++I+D LK  N+T+LL   + L
Sbjct: 90  VEAAVEIHHNFTRAVIVDNLKLANVTVLLHHLQKL 124

BLAST of MELO3C029202 vs. ExPASy TrEMBL
Match: B7FGJ9 (Uncharacterized protein (Fragment) OS=Medicago truncatula OX=3880 PE=2 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 4.2e-14
Identity = 44/72 (61.11%), Postives = 57/72 (79.17%), Query Frame = 0

Query: 31  MFHNSSRSCQHKESKLSRREQPSNPTFNFLNTHVKTRINNPTFVQPIVEFKNNFSRSMII 90
           M HN+SRS Q+  SKLS RE+ S+PTFN L+T +KTR NNPTFVQP ++F N+F RS+II
Sbjct: 1   MIHNTSRSGQNNVSKLSGREKSSSPTFNLLDTDIKTRTNNPTFVQPTIQFNNDFPRSVII 60

Query: 91  DKLKFTNITMLL 103
           + LK +NIT+ L
Sbjct: 61  NILKLSNITVFL 72

BLAST of MELO3C029202 vs. ExPASy TrEMBL
Match: A0A0L0P0H3 (40s ribosomal protein s22 OS=Candida auris OX=498019 GN=QG37_03197 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 5.0e-07
Identity = 35/95 (36.84%), Postives = 56/95 (58.95%), Query Frame = 0

Query: 14  VEETKNFASNILPSCFCMFHNSSRSCQHKESKLSRREQPSNPTFNFLNTHVKTRINNPTF 73
           V ET++   N+L S   + H++SR  Q   +KLS R+Q   P+ N L+ HV++  N+ T 
Sbjct: 10  VNETQDLTGNMLSSGLLVVHDTSRGGQDDVTKLSGRQQVVGPSLNVLDLHVESWRNDTTL 69

Query: 74  VQPIVEFKNNFSRSMIIDKLKFTNITMLLQTRRNL 109
           VQ   +  NN +RS+++D LK T++ +LL     L
Sbjct: 70  VQSTGQLNNNLTRSVVVDVLKLTDVAVLLHNLEEL 104

BLAST of MELO3C029202 vs. ExPASy TrEMBL
Match: A0A6G0W5G2 (ANK_REP_REGION domain-containing protein OS=Aphanomyces euteiches OX=100861 GN=Ae201684_018561 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 3.2e-06
Identity = 30/95 (31.58%), Postives = 56/95 (58.95%), Query Frame = 0

Query: 14  VEETKNFASNILPSCFCMFHNSSRSCQHKESKLSRREQPSNPTFNFLNTHVKTRINNPTF 73
           VEET + A+++L + F + H++ R  QH  S+L+ R+Q  +P FN L   ++   ++  F
Sbjct: 214 VEETNDLATSVLATSFVVVHDAVRGRQHDVSELTGRQQVVDPLFNILELDIEAGRDDTAF 273

Query: 74  VQPIVEFKNNFSRSMIIDKLKFTNITMLLQTRRNL 109
           V    +F N+ + ++++D  KF N+ +LL   + L
Sbjct: 274 VDAAAQFNNDLATTVVVDDFKFANVAVLLHGLQKL 308

BLAST of MELO3C029202 vs. ExPASy TrEMBL
Match: A0A7S0YDP9 (Hypothetical protein OS=Polytomella parva OX=51329 GN=PPAR00522_LOCUS7269 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 7.2e-06
Identity = 34/88 (38.64%), Postives = 55/88 (62.50%), Query Frame = 0

Query: 21  ASNILPSCFCMFHNSSRSCQHKESKLSRREQPSNPTFNFLNTHVKTRINNPTFVQPIVEF 80
           A+N L + F M HN+ RS ++  ++L+RR++ SNP+ N   T V    N+   V+  +EF
Sbjct: 1   ATNTLLTGFLMVHNALRSGKNDVAELTRRKETSNPSLNLTVTKVIAGRNDTALVKSAIEF 60

Query: 81  KNNFSRSMIIDKLKFTNITMLLQTRRNL 109
            NN SR++II+ L+ TN+T+ L   + L
Sbjct: 61  NNNLSRTVIINVLEVTNVTVSLHKTKKL 88

BLAST of MELO3C029202 vs. ExPASy TrEMBL
Match: A0A0A9CUT9 (40S ribosomal protein S15a OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.6e-05
Identity = 29/78 (37.18%), Postives = 49/78 (62.82%), Query Frame = 0

Query: 31  MFHNSSRSCQHKESKLSRREQPSNPTFNFLNTHVKTRINNPTFVQPIVEFKNNFSRSMII 90
           M H++SR CQ    KL+  ++P  P  N L+T+++TR ++P  V+P V+F ++   +M+I
Sbjct: 1   MIHDASRGCQDDVPKLTGWKKPGCPALNLLHTNIETRADHPALVKPPVQFNHDLPGTMVI 60

Query: 91  DKLKFTNITMLLQTRRNL 109
           + LK TN+ M L   + L
Sbjct: 61  NILKLTNVAMALHDDQEL 78

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
ACJ83878.18.7e-1461.11unknown, partial [Medicago truncatula][more]
KAF0722269.16.7e-0631.58hypothetical protein Ae201684_018561 [Aphanomyces euteiches][more]
KND99778.23.3e-0534.7440s ribosomal protein s22 [[Candida] auris][more]
EKG01352.12.1e-0430.53hypothetical protein TCSYLVIO_007646 [Trypanosoma cruzi][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
B7FGJ94.2e-1461.11Uncharacterized protein (Fragment) OS=Medicago truncatula OX=3880 PE=2 SV=1[more]
A0A0L0P0H35.0e-0736.8440s ribosomal protein s22 OS=Candida auris OX=498019 GN=QG37_03197 PE=4 SV=1[more]
A0A6G0W5G23.2e-0631.58ANK_REP_REGION domain-containing protein OS=Aphanomyces euteiches OX=100861 GN=A... [more]
A0A7S0YDP97.2e-0638.64Hypothetical protein OS=Polytomella parva OX=51329 GN=PPAR00522_LOCUS7269 PE=4 S... [more]
A0A0A9CUT91.6e-0537.1840S ribosomal protein S15a OS=Arundo donax OX=35708 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C029202.1MELO3C029202.1mRNA