MELO3C029178 (gene) Melon (DHL92) v4

Overview


Name	MELO3C029178
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Chromatin-remodeling ATPase INO80
Location	chr01: 26774022 .. 26779106 (-)
RNA-Seq Expression	MELO3C029178
Synteny	MELO3C029178

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTATTGTTTATCTATGAAGGAGTACTCATTCGGCGGGAATTTCAGTTTTTCAACATCGTCCAAAAATGGCAAGACATATGTTGTCGCCAATCTGTACTTGAATTGACGAAAGCATACGTTAGCTTTCTAGATGATAGTTTCATGGGTTTCGAACTCATAACTTCGAGGCCAGACACGCGCTTAATTTGACGGAAAGGAGAGGATTTTTGAAAAGTTGTTATATATTTACAAGATTGCCATTGAAAATATGTGAGAAAAAATGATTTGCAGGCTATGAGATTCGAACACAGGACATCAAAGGCGCGCACAAGACGACACGTGGCATGCGTAGATTGGCCGAAGAGTGGAGAAGGTGGGCGCCTGAAGTCTTTCGAAAATGGGGAATAAAGAAATAACCTCGACTGGGATTCGAACTCGCGACCTTGATGTGTTTTATGCGCGTGGAAGTATTGAATCTTTTTGGTTATTTAACAATTGGTCTCTGATATTCGATTTACCCGTTTTTCTTTGTTCGAACTTAGTTTTAAGTATTTTTCATTGCATTGGGTTCGTAATAAAGTGTAGATTCTAATTCCGTATAAAATTATAAAAATAATGAATATATGAATGATATAGGTAGAGAGAGCCTAGGCTTTCGTGTTTTCGGTAGAGAGAGAAAATATGCTATTGTTATATAATTTTAATTGCGTGAGAGAGGGAATTAACAAAGTTTGAAATTTGAGGTTTTTTTTATTTCAAAATTTTTTAAATGATATAAAAAATTTGTTGATAATTAACAACGTTTTAAATGTGTCAGAAAAATTAAATTGTGTCAATAGAATTGTGTCAATAAATAATTTTTAACGACACAATTGTACCTCACCCCATCTTTTTTATTTTCAACGACACAATATCTTGATTAGTTGTGTCATTAAAACCCATTTTTCTAGTAGCCGGGAGAGAATAGAAATCGGAGCGGCCAAGATTCTTCGACGGCAGTCTCTTAGATTGGTGGGTTCGACGGCAATCCCTTAGACGATGTTTGCTTATTCGACGGGGTTTGCTTATTCGACAAAGTGGGATTAGTGGGTTTGACGACAGTCTCTTAGATTTGGAGATGAGTTACATTATTTCCCGTTTTTTGGTAGGGAGAGAGCAAATGTTGAGCAAATTGTAAAACTCTTTTTGAATGTCGCGTGAAGAGGGAATTGGAAAATTTTGAATTTTTGGTTTTTTTATTTCAAAATTTATTTAATGACACAAAGAATTTGTTGTTAATTAACGACACTTTAAATGTGTCAAGAGCTTACATAAGATTGAAACCATGAATAGTCACTTTTAAGTTATAACATTGTTATAACTATATAAAATTGACTATTTCGATTATTGATGACCTAGGTAACTTAATTGTAGTCTTAAGCTAACTATGAACTTCTGCTCATGTGGAATTATTCTTAGATATCTGTATATAGGTGAGGTCAGCTTAGCAGCACTGGTCTAATAAGCCTCCCATTTTAGAGTTAAGACCAGGTGGATAACTAGGGACATAGACTACAAGACGGAAATCACTCTACTCGCTTTAGGGTTAGTAGATAGGTTGTTCCCTTAAGAACTGAATCCAAGTCTTAAACAAAGGGCCCTACCCTCTCATTGGCCCAAGAGGGATTCGGTTTAAAGGTTAGACCTTAAACCCAAGATGTAGTATCGGGATAAAATGGTATTTTAACCCAGCCGAACAATTTATGAAGAATTAAGTTACTGATCAATGTTATATCAGATGAGCACAAATAATCTGTGAAAGGAGTGCAACTACGAGACTTGAGTGGAATCACGGTTAGTTAACGAATGTTGACGGTCTAAAAAGGTTTAATCAGTTAATTCCATATGGTTGGAGCCATGATCTATAGATTTATTAGGTTTCCCTGCTAGCTCATATGTAATTAACTTAGAACAATACGTTGAACTAATTCGAATAGAAGTTAAGGTATAAAACCTATACAACTAGTCAAACATATTATTTAAAAGCCCTAAAACAGTCCATTAATCTATGTTACATTAACAAAACACTAATTAACTACAAAAGAGAAATACATCAACTTCCCTCCCCTCGAGGAAAACTCGTCCTCAAGTTTAGTCTAAAATTTGGAGCGGGAGAAAATTACTCAGAAAATCCACTATGTTGAAGATAGGAATGATGTGTAAGTGATCGGGCAACTCAATTTTGCAAGCATTGTCACCAAACCTCTTTATTATACCGAAAGGGGCCTATCTTATTTGGCTCTGATTTATTGTATTTTCCAGCTGTAGTTGTTCTTTGAAGGTAGATCATTACTAGATCTTCTTCGTTACATTCTTTGAACCATTTAGGCTTGTCGGCTGGCTTGTGTCATGTATTTTTCATTCATCTTCTCAATTTGGTTTGTCACTTCATTATGAAGCTTAGCTATCATTTCTGCCATGCCTTCCGCTTCCAAACTAAGATCAACTTTATAAGGAATATTAGACTGTTAATTTAGTGTAAACAATACCTCTTCTATTGATCTATTCTTCATGTGGTTGTAAGCCAACTCGACTTACTAAGACTTTCTCATTGTTTAGGTTTGTGTCCTCCAATGCATCTTATAAGGTTAGATAGAATTCTACTAATGAATTCCTTTTGGTCATCCGTTTGCGATGGCAACAAGAGATGAAGCTCTTCTGACCAGATTTCTGCCTAGTAATCCTGAATTTAATGAAACCAACATAACACGTCACTTCCCCGGATGCTGTCTAATCAGAACGCAAAACTATGTTCTCTATTATTATTCATTATTATTAAAAAAAACGTGGGCTGAAGTTCGAGTTATATCTCAAAGTCTTCAGTTCCAAAAAGTATTCCAACTGGTGCATTTATTTGAGGTTCATGAGTTTAGGCGAATAATTATGTTTAAAGTTCAGTTGTGAGTTGTGACTCAAACCGAATCACGTTTTTATAAGTGTAAAGTTGGTGGGTGACTGCAGTATCTGAAAGCAAGGATTTTTTCTATCATCCTTTGTTATTTATTTTCTACAATTTGAGCCTTTTCACTTTTGCTACTTTTGGTATGCCTGTTTATTAATCATAATAAGATGGCAGGAAATTTTTTTCTGATTGTTAAATTTGCGATCTGTTTACTTTTTGTTCTAATTTGAATTCTGAATTTATTAAAACTACATGGTTGTTGGCTGATGGTGTAAGAGTTACATCTTTTGTCAGATAAATAAGGTCAATCCCAGGGAATTAAATCCATATTTTAAAGAAAATGGAACTGGTTGTCCCGAGGAAAGTGATAGACTCAAATCAGATATAGACAAACTTCCACCATCTCGGGTTGTTGGGGATGGGACGTTAGTTGGAGACTTAAACCATTGAAGAAGGCCGAGGAGCAAGCAGCTCGAAATGGACGGAGAGTTGAAGAGGCTTGCTCATTATTACTATATTATGTTTGTTCATGCAATTTTTTACCCTTTAATTTCTTTGGTTTTTTATAAATTGGAACTGTATAGGTTGTTGAAGAACGTTGTGGTTCTCTTGGCCAACTTGCTGTCTCTCTGTAGCAGCCAGTAAGGTGGCACCGTCACGTTCTCATTTACATGCTATAGAAAATAGAAAGAGAGGGCTAACCAGTCATCAACCATCAGACAGTCAAAATGAAGGTTATTCTGGAAAGGTACTTGGAAATCATTGATTGTGTTAATTTTACTAGATATGTGGCTTCATATTTTTGTTTGAAACTTATCTTTATTCTTCATAATGAAGAAAATAATACATCCATGCTAATTTGGTGCCATTTTAGACCTCTGCGAGGGAACACTTGAAGGACATCTCTTCCAGAAATCCTGAAATGAGGGAGCCTAAAGTTTGAGATTCTTTATCATGGGAAAAACAACAAAGTCAAAATGTTTCTTCAAGGGATGTTGGTTTCATTTCTGTAGCAGTGTCCAGCTTAAATAAGTTCTCAGATGATGGAAGTTTTGCATCTGAGTTTCTCAGACAACAACGTGAAAATACTTTGTGATTCAGTTAAGAGAGGTGAAATCAGAATTGGTTGTCTCAAATCCGAGAAGCGCATTGAAGATTGTGTTTCGGCCAGGATGCAATGAGAGCAAACAAGTTGGCTGCAAAGGCATTTCAACTTCAATGTAAAAGGAAAACATGAAAAGCTCAAAAGCTTTTGGTAGGACAAGTTTTAGTCTCTACAAACTCCATTTTCTCATTTTATTTTTGGTATTGTTGCTGCATGCCACACTTATGTTTTCTAGTAATGGTGGTTTTCTAGGATTGATTAACGTTGTCTAGGAATGGTGGTTTTCACATCCTCATTACCAGCTATCAGCTACTCGTTTCTGATGAAAAGTGTTTTCGACATGTGAAGTGGCAATATATGGTATTGGATGAGGCACAAGCAATCAAAGTTCTACGAGGTTTGTTCTTTTTTACTTTGCATAAGGCTTTAGCTGATATACGTACTTTGTTGGTCCTTGACTAGAGCTATACGTACTTTGTTGATATACGAACTTTCCTATTTTGGTGGGTTTTCTTTTTTAATGCACTTGTATTCTTTCTCTTTTCTTTTCTTTTCTTTTTTTTTTTTTTTTTTTTTCTCTCAATGGAAGACCGGATTTTCATTAATAAAAAGAAAAAGAATGATGAGAATGAAAGGTTTTTCTTGTATATTATCGACCCTCCTCCCTTCCTATTTTAGTGTTTGAGTGAATACTAGTAATAATCAATCATTTAACTTTGTTACCTCGCCCAAAAATAATAAGAAAAAAGATGATCCATCATCTAACTGAGAAACAGTTGATGAAGGGATAGGGTGTTAGGCTTTTGTTAACATGAAATCTTCTTGCTTGTGCCACGAATACCAAACAGCTGAATAGTTTTGCTCAGCAGAACTCATATAAAAGTATTGCACAGCAGAACCTTCCAAAAAAATATTACTTAATAGAACGCCATGATAAGGGTGGTCGTTGTTTAGGCTATACAGTAAGTCAGTAACGTGTGTTATGTTGCCTACTTTAGTTGACAACCACAAACAGTTCAATGAGTGGTTTTCAAAAGGGTTAGTATTGATTAGATGA

mRNA sequence

ATGTTATTGTTTATCTATGAAGGAGTACTCATTCGGCGGGAATTTCAGTTTTTCAACATCGTCCAAAAATGGCAAGACATATGTTGTCGCCAATCTGTACTTGAATTGACGAAAGCATACGTTAGCTTTCTAGATGATAGTTTCATGGGCTATGAGATTCGAACACAGGACATCAAAGGCGCGCACAAGACGACACGTGGCATGCGTAGATTGGCCGAAGAGTGGAGAAGGTGGGCGCCTGAAAAATCGGAGCGGCCAAGATTCTTCGACGGCAGTCTCTTAGATTGGTGGGTTCGACGGCAATCCCTTAGACGATGTTTGCTTATTCGACGGGGTTTGCTTATTCGACAAAGTGGGATTAGTGGGTTTGACGACAGTCTCTTAGATTTGGAGATGAGTTACATTATTTCCCGTTTTTTGGTAGGGAGAGAGCAAATGTTGAGCAAATTGTTTGTGTCCTCCAATGCATCTTATAAGATAAATAAGGTCAATCCCAGGGAATTAAATCCATATTTTAAAGAAAATGGAACTGGTTGTCCCGAGGAAAGTGATAGACTCAAATCAGATATAGACAAACTTCCACCATCTCGGGTTGTTGGGGATGGGACAACGTTGTGGTTCTCTTGGCCAACTTGCTGTCTCTCTGTAGCAGCCAGTAAGGTGGCACCGTCACGTTCTCATTTACATGCTATAGAAAATAGAAAGAGAGGGCTAACCAGTCATCAACCATCAGACAGTCAAAATGAAGGTTATTCTGGAAAGACCTCTGCGAGGGAACACTTGAAGGACATCTCTTCCAGAAATCCTGAAATGAGGGAGCCTAAATTAAGAGAGGTGAAATCAGAATTGGTTGTCTCAAATCCGAGAAGCGCATTGAAGATTGTGTTTCGGCCAGGATGCAATGAGAGCAAACAAGTTGGCTGCAAAGGCATTTCAACTTCAATGAATGGTGGTTTTCACATCCTCATTACCAGCTATCAGCTACTCGTTTCTGATGAAAAGTGTTTTCGACATGTGAAGTGGCAATATATGGTATTGGATGAGGCACAAGCAATCAAAGTTCTACGAGACCGGATTTTCATTAATAAAAAGAAAAAGAATGATGAGAATGAAAGTAAGTCAGTAACGTGTGTTATGTTGCCTACTTTAGTTGACAACCACAAACAGTTCAATGAGTGGTTTTCAAAAGGGTTAGTATTGATTAGATGA

Coding sequence (CDS)

ATGTTATTGTTTATCTATGAAGGAGTACTCATTCGGCGGGAATTTCAGTTTTTCAACATCGTCCAAAAATGGCAAGACATATGTTGTCGCCAATCTGTACTTGAATTGACGAAAGCATACGTTAGCTTTCTAGATGATAGTTTCATGGGCTATGAGATTCGAACACAGGACATCAAAGGCGCGCACAAGACGACACGTGGCATGCGTAGATTGGCCGAAGAGTGGAGAAGGTGGGCGCCTGAAAAATCGGAGCGGCCAAGATTCTTCGACGGCAGTCTCTTAGATTGGTGGGTTCGACGGCAATCCCTTAGACGATGTTTGCTTATTCGACGGGGTTTGCTTATTCGACAAAGTGGGATTAGTGGGTTTGACGACAGTCTCTTAGATTTGGAGATGAGTTACATTATTTCCCGTTTTTTGGTAGGGAGAGAGCAAATGTTGAGCAAATTGTTTGTGTCCTCCAATGCATCTTATAAGATAAATAAGGTCAATCCCAGGGAATTAAATCCATATTTTAAAGAAAATGGAACTGGTTGTCCCGAGGAAAGTGATAGACTCAAATCAGATATAGACAAACTTCCACCATCTCGGGTTGTTGGGGATGGGACAACGTTGTGGTTCTCTTGGCCAACTTGCTGTCTCTCTGTAGCAGCCAGTAAGGTGGCACCGTCACGTTCTCATTTACATGCTATAGAAAATAGAAAGAGAGGGCTAACCAGTCATCAACCATCAGACAGTCAAAATGAAGGTTATTCTGGAAAGACCTCTGCGAGGGAACACTTGAAGGACATCTCTTCCAGAAATCCTGAAATGAGGGAGCCTAAATTAAGAGAGGTGAAATCAGAATTGGTTGTCTCAAATCCGAGAAGCGCATTGAAGATTGTGTTTCGGCCAGGATGCAATGAGAGCAAACAAGTTGGCTGCAAAGGCATTTCAACTTCAATGAATGGTGGTTTTCACATCCTCATTACCAGCTATCAGCTACTCGTTTCTGATGAAAAGTGTTTTCGACATGTGAAGTGGCAATATATGGTATTGGATGAGGCACAAGCAATCAAAGTTCTACGAGACCGGATTTTCATTAATAAAAAGAAAAAGAATGATGAGAATGAAAGTAAGTCAGTAACGTGTGTTATGTTGCCTACTTTAGTTGACAACCACAAACAGTTCAATGAGTGGTTTTCAAAAGGGTTAGTATTGATTAGATGA

Protein sequence

MLLFIYEGVLIRREFQFFNIVQKWQDICCRQSVLELTKAYVSFLDDSFMGYEIRTQDIKGAHKTTRGMRRLAEEWRRWAPEKSERPRFFDGSLLDWWVRRQSLRRCLLIRRGLLIRQSGISGFDDSLLDLEMSYIISRFLVGREQMLSKLFVSSNASYKINKVNPRELNPYFKENGTGCPEESDRLKSDIDKLPPSRVVGDGTTLWFSWPTCCLSVAASKVAPSRSHLHAIENRKRGLTSHQPSDSQNEGYSGKTSAREHLKDISSRNPEMREPKLREVKSELVVSNPRSALKIVFRPGCNESKQVGCKGISTSMNGGFHILITSYQLLVSDEKCFRHVKWQYMVLDEAQAIKVLRDRIFINKKKKNDENESKSVTCVMLPTLVDNHKQFNEWFSKGLVLIR

Homology

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BLAST of MELO3C029178 vs. NCBI nr
Match: XP_008450259.1 (PREDICTED: CWF19-like protein 2 homolog [Cucumis melo] >XP_008450260.1 PREDICTED: CWF19-like protein 2 homolog [Cucumis melo] >XP_008450261.1 PREDICTED: CWF19-like protein 2 homolog [Cucumis melo] >XP_008450262.1 PREDICTED: CWF19-like protein 2 homolog [Cucumis melo])

HSP 1 Score: 180.3 bits (456), Expect = 3.4e-41
Identity = 100/164 (60.98%), Postives = 110/164 (67.07%), Query Frame = 0


Query: 142 GREQMLSKLFVSSNASYKINKVNPRELNPYFKENGTGCPEESDRLKSDIDKLPPSRVVGD 201
           G ++ +        A  +INKVNPRELNPYFKENGTG PE+SDRLKSDIDKLPP RVVGD
Sbjct: 186 GLDECVDNQQEEEEALEEINKVNPRELNPYFKENGTGYPEDSDRLKSDIDKLPPPRVVGD 245

Query: 202 G---------------------------TTLWFSWPTCCLSVAASKVAPSRSHLHAIENR 261
           G                              W S     +SVAASKVAPSRSHLHAI NR
Sbjct: 246 GGASWRLKALKRAEEQAARDGRRLEEVVEERWGSLGQLAVSVAASKVAPSRSHLHAIRNR 305

Query: 262 KRGLTSHQPSDSQNEGYSGKTSAREHLKDISSRNPEMREPKLRE 279
           KRGLTSHQPSD QNE  SGK+SAR+HLKDISSRNPEMREPK+R+
Sbjct: 306 KRGLTSHQPSDGQNESDSGKSSARDHLKDISSRNPEMREPKVRD 349

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BLAST of MELO3C029178 vs. NCBI nr
Match: TYK14531.1 (CWF19-like protein 2-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 179.5 bits (454), Expect = 5.8e-41
Identity = 95/138 (68.84%), Postives = 103/138 (74.64%), Query Frame = 0


Query: 159 KINKVNPRELNPYFKENGTGCPEESDRLKSDIDKLPPSRVVGDGTTLW------------ 218
           +INKVNPRELNPYFKENGTG PE+SDRLKSDIDKLPP RVVGDG   W            
Sbjct: 75  RINKVNPRELNPYFKENGTGYPEDSDRLKSDIDKLPPPRVVGDGGASWRLKALKRAEEQA 134

Query: 219 ------FSWPTCCLSVAASKVAPSRSHLHAIENRKRGLTSHQPSDSQNEGYSGKTSAREH 278
                        L ++ASKVAPSRSHLHAI NRKRGLTSHQPSD QNE  SGK+SAR+H
Sbjct: 135 ARDGRRLEEACSLLLLSASKVAPSRSHLHAIRNRKRGLTSHQPSDGQNESDSGKSSARDH 194

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BLAST of MELO3C029178 vs. NCBI nr
Match: XP_031741491.1 (CWF19-like protein 2 isoform X3 [Cucumis sativus])

HSP 1 Score: 168.7 bits (426), Expect = 1.0e-37
Identity = 96/164 (58.54%), Postives = 106/164 (64.63%), Query Frame = 0


Query: 142 GREQMLSKLFVSSNASYKINKVNPRELNPYFKENGTGCPEESDRLKSDIDKLPPSRVVGD 201
           G ++ +        A  +INKVNPRELNPYFKENGTG PE SDRLKSD DKLPP RVVGD
Sbjct: 124 GLDECVDNQQEEEEALEEINKVNPRELNPYFKENGTGYPENSDRLKSDTDKLPPPRVVGD 183

Query: 202 G---------------------------TTLWFSWPTCCLSVAASKVAPSRSHLHAIENR 261
           G                              W S     +SVAASKVAPSRSHLHAI +R
Sbjct: 184 GGASWRLKALKRAEEQAARDGRRLEEVVEERWGSLGHLAVSVAASKVAPSRSHLHAIRDR 243

Query: 262 KRGLTSHQPSDSQNEGYSGKTSAREHLKDISSRNPEMREPKLRE 279
           KR LTSHQPSDSQNE  SGK+SAR HLK ISSRNPEM+EPK+R+
Sbjct: 244 KRVLTSHQPSDSQNESDSGKSSARNHLKGISSRNPEMKEPKVRD 287

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BLAST of MELO3C029178 vs. NCBI nr
Match: XP_011654476.1 (CWF19-like protein 2 isoform X1 [Cucumis sativus])

HSP 1 Score: 168.7 bits (426), Expect = 1.0e-37
Identity = 96/164 (58.54%), Postives = 106/164 (64.63%), Query Frame = 0


Query: 142 GREQMLSKLFVSSNASYKINKVNPRELNPYFKENGTGCPEESDRLKSDIDKLPPSRVVGD 201
           G ++ +        A  +INKVNPRELNPYFKENGTG PE SDRLKSD DKLPP RVVGD
Sbjct: 187 GLDECVDNQQEEEEALEEINKVNPRELNPYFKENGTGYPENSDRLKSDTDKLPPPRVVGD 246

Query: 202 G---------------------------TTLWFSWPTCCLSVAASKVAPSRSHLHAIENR 261
           G                              W S     +SVAASKVAPSRSHLHAI +R
Sbjct: 247 GGASWRLKALKRAEEQAARDGRRLEEVVEERWGSLGHLAVSVAASKVAPSRSHLHAIRDR 306

Query: 262 KRGLTSHQPSDSQNEGYSGKTSAREHLKDISSRNPEMREPKLRE 279
           KR LTSHQPSDSQNE  SGK+SAR HLK ISSRNPEM+EPK+R+
Sbjct: 307 KRVLTSHQPSDSQNESDSGKSSARNHLKGISSRNPEMKEPKVRD 350

[Close]

BLAST of MELO3C029178 vs. NCBI nr
Match: XP_031741490.1 (CWF19-like protein 2 isoform X2 [Cucumis sativus] >KAE8648194.1 hypothetical protein Csa_018433 [Cucumis sativus])

HSP 1 Score: 168.7 bits (426), Expect = 1.0e-37
Identity = 96/164 (58.54%), Postives = 106/164 (64.63%), Query Frame = 0


Query: 142 GREQMLSKLFVSSNASYKINKVNPRELNPYFKENGTGCPEESDRLKSDIDKLPPSRVVGD 201
           G ++ +        A  +INKVNPRELNPYFKENGTG PE SDRLKSD DKLPP RVVGD
Sbjct: 180 GLDECVDNQQEEEEALEEINKVNPRELNPYFKENGTGYPENSDRLKSDTDKLPPPRVVGD 239

Query: 202 G---------------------------TTLWFSWPTCCLSVAASKVAPSRSHLHAIENR 261
           G                              W S     +SVAASKVAPSRSHLHAI +R
Sbjct: 240 GGASWRLKALKRAEEQAARDGRRLEEVVEERWGSLGHLAVSVAASKVAPSRSHLHAIRDR 299

Query: 262 KRGLTSHQPSDSQNEGYSGKTSAREHLKDISSRNPEMREPKLRE 279
           KR LTSHQPSDSQNE  SGK+SAR HLK ISSRNPEM+EPK+R+
Sbjct: 300 KRVLTSHQPSDSQNESDSGKSSARNHLKGISSRNPEMKEPKVRD 343

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BLAST of MELO3C029178 vs. ExPASy Swiss-Prot
Match: Q8RXS6 (Chromatin-remodeling ATPase INO80 OS=Arabidopsis thaliana OX=3702 GN=INO80 PE=2 SV=2)

HSP 1 Score: 94.4 bits (233), Expect = 3.2e-18
Identity = 51/97 (52.58%), Postives = 63/97 (64.95%), Query Frame = 0


Query: 316 NGGFHILITSYQLLVSDEKCFRHVKWQYMVLDEAQAIKV-------------LRDRIFIN 375
           + GFHILITSYQLLV+DEK FR VKWQYMVLDEAQAIK               R+R+ + 
Sbjct: 689 DAGFHILITSYQLLVTDEKYFRRVKWQYMVLDEAQAIKSSSSIRWKTLLSFNCRNRLLLT 748

Query: 376 KKK-KNDENESKSVTCVMLPTLVDNHKQFNEWFSKGL 399
               +N+  E  ++   ++P L DNH QFNEWFSKG+
Sbjct: 749 GTPIQNNMAELWALLHFIMPMLFDNHDQFNEWFSKGI 785

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BLAST of MELO3C029178 vs. ExPASy Swiss-Prot
Match: Q4PGL2 (Chromatin-remodeling ATPase INO80 OS=Ustilago maydis (strain 521 / FGSC 9021) OX=237631 GN=INO80 PE=3 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.5e-15
Identity = 45/104 (43.27%), Postives = 65/104 (62.50%), Query Frame = 0


Query: 309  KGISTSMNGGFHILITSYQLLVSDEKCFRHVKWQYMVLDEAQAIKV-------------L 368
            K IS + +  FH+L+TSYQL+VSDEK F+ VKWQYM+LDEAQAIK               
Sbjct: 1095 KQISYNRDAPFHVLVTSYQLVVSDEKYFQRVKWQYMILDEAQAIKSSSSIRWKTLLGFNC 1154

Query: 369  RDRIFI-NKKKKNDENESKSVTCVMLPTLVDNHKQFNEWFSKGL 399
            R+R+ +     +N   E  ++   ++P+L D+H +F+EWFSK +
Sbjct: 1155 RNRLLLTGTPVQNSMQELWALLHFIMPSLFDSHDEFSEWFSKDI 1198

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BLAST of MELO3C029178 vs. ExPASy Swiss-Prot
Match: Q9VDY1 (Chromatin-remodeling ATPase INO80 OS=Drosophila melanogaster OX=7227 GN=Ino80 PE=1 SV=2)

HSP 1 Score: 82.0 bits (201), Expect = 1.7e-14
Identity = 43/97 (44.33%), Postives = 60/97 (61.86%), Query Frame = 0


Query: 316 NGGFHILITSYQLLVSDEKCFRHVKWQYMVLDEAQAIK-------------VLRDRIFIN 375
           +  FH++ITSYQL+VSD K F  +KWQYMVLDEAQAIK               R+R+ ++
Sbjct: 638 DASFHVVITSYQLVVSDYKYFNRIKWQYMVLDEAQAIKSAASQRWKLLLGFSCRNRLLLS 697

Query: 376 KKK-KNDENESKSVTCVMLPTLVDNHKQFNEWFSKGL 399
               +N   E  ++   ++PTL D+H +FNEWFSK +
Sbjct: 698 GTPIQNSMAELWALLHFIMPTLFDSHDEFNEWFSKDI 734

[Close]

BLAST of MELO3C029178 vs. ExPASy Swiss-Prot
Match: Q9ULG1 (Chromatin-remodeling ATPase INO80 OS=Homo sapiens OX=9606 GN=INO80 PE=1 SV=2)

HSP 1 Score: 80.1 bits (196), Expect = 6.3e-14
Identity = 42/94 (44.68%), Postives = 59/94 (62.77%), Query Frame = 0


Query: 319 FHILITSYQLLVSDEKCFRHVKWQYMVLDEAQAIK-------------VLRDRIFINKKK 378
           FH++ITSYQL+V D K F+ VKWQYMVLDEAQA+K               R+R+ +    
Sbjct: 624 FHVVITSYQLVVQDVKYFQRVKWQYMVLDEAQALKSSSSVRWKILLQFQCRNRLLLTGTP 683

Query: 379 -KNDENESKSVTCVMLPTLVDNHKQFNEWFSKGL 399
            +N   E  ++   ++PTL D+H++FNEWFSK +
Sbjct: 684 IQNTMAELWALLHFIMPTLFDSHEEFNEWFSKDI 717

[Close]

BLAST of MELO3C029178 vs. ExPASy Swiss-Prot
Match: Q6ZPV2 (Chromatin-remodeling ATPase INO80 OS=Mus musculus OX=10090 GN=Ino80 PE=1 SV=2)

HSP 1 Score: 80.1 bits (196), Expect = 6.3e-14
Identity = 42/94 (44.68%), Postives = 59/94 (62.77%), Query Frame = 0


Query: 319 FHILITSYQLLVSDEKCFRHVKWQYMVLDEAQAIK-------------VLRDRIFINKKK 378
           FH++ITSYQL+V D K F+ VKWQYMVLDEAQA+K               R+R+ +    
Sbjct: 626 FHVVITSYQLVVQDVKYFQRVKWQYMVLDEAQALKSSSSVRWKILLQFQCRNRLLLTGTP 685

Query: 379 -KNDENESKSVTCVMLPTLVDNHKQFNEWFSKGL 399
            +N   E  ++   ++PTL D+H++FNEWFSK +
Sbjct: 686 IQNTMAELWALLHFIMPTLFDSHEEFNEWFSKDI 719

[Close]

BLAST of MELO3C029178 vs. ExPASy TrEMBL
Match: A0A1S3BPU3 (CWF19-like protein 2 homolog OS=Cucumis melo OX=3656 GN=LOC103491921 PE=4 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 1.6e-41
Identity = 100/164 (60.98%), Postives = 110/164 (67.07%), Query Frame = 0


Query: 142 GREQMLSKLFVSSNASYKINKVNPRELNPYFKENGTGCPEESDRLKSDIDKLPPSRVVGD 201
           G ++ +        A  +INKVNPRELNPYFKENGTG PE+SDRLKSDIDKLPP RVVGD
Sbjct: 186 GLDECVDNQQEEEEALEEINKVNPRELNPYFKENGTGYPEDSDRLKSDIDKLPPPRVVGD 245

Query: 202 G---------------------------TTLWFSWPTCCLSVAASKVAPSRSHLHAIENR 261
           G                              W S     +SVAASKVAPSRSHLHAI NR
Sbjct: 246 GGASWRLKALKRAEEQAARDGRRLEEVVEERWGSLGQLAVSVAASKVAPSRSHLHAIRNR 305

Query: 262 KRGLTSHQPSDSQNEGYSGKTSAREHLKDISSRNPEMREPKLRE 279
           KRGLTSHQPSD QNE  SGK+SAR+HLKDISSRNPEMREPK+R+
Sbjct: 306 KRGLTSHQPSDGQNESDSGKSSARDHLKDISSRNPEMREPKVRD 349

[Close]

BLAST of MELO3C029178 vs. ExPASy TrEMBL
Match: A0A5D3CRV4 (CWF19-like protein 2-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold552G00100 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 2.8e-41
Identity = 95/138 (68.84%), Postives = 103/138 (74.64%), Query Frame = 0


Query: 159 KINKVNPRELNPYFKENGTGCPEESDRLKSDIDKLPPSRVVGDGTTLW------------ 218
           +INKVNPRELNPYFKENGTG PE+SDRLKSDIDKLPP RVVGDG   W            
Sbjct: 75  RINKVNPRELNPYFKENGTGYPEDSDRLKSDIDKLPPPRVVGDGGASWRLKALKRAEEQA 134

Query: 219 ------FSWPTCCLSVAASKVAPSRSHLHAIENRKRGLTSHQPSDSQNEGYSGKTSAREH 278
                        L ++ASKVAPSRSHLHAI NRKRGLTSHQPSD QNE  SGK+SAR+H
Sbjct: 135 ARDGRRLEEACSLLLLSASKVAPSRSHLHAIRNRKRGLTSHQPSDGQNESDSGKSSARDH 194

[Close]

BLAST of MELO3C029178 vs. ExPASy TrEMBL
Match: A0A0A0KMK6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G033990 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 2.2e-38
Identity = 95/147 (64.63%), Postives = 101/147 (68.71%), Query Frame = 0


Query: 159 KINKVNPRELNPYFKENGTGCPEESDRLKSDIDKLPPSRVVGDG---------------- 218
           KINKVNPRELNPYFKENGTG PE SDRLKSD DKLPP RVVGDG                
Sbjct: 20  KINKVNPRELNPYFKENGTGYPENSDRLKSDTDKLPPPRVVGDGGASWRLKALKRAEEQA 79

Query: 219 -----------TTLWFSWPTCCLSVAASKVAPSRSHLHAIENRKRGLTSHQPSDSQNEGY 278
                         W S     +SVAASKVAPSRSHLHAI +RKR LTSHQPSDSQNE  
Sbjct: 80  ARDGRRLEEVVEERWGSLGHLAVSVAASKVAPSRSHLHAIRDRKRVLTSHQPSDSQNESD 139

[Close]

BLAST of MELO3C029178 vs. ExPASy TrEMBL
Match: A0A6J1G3U6 (CWF19-like protein 2 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111450520 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 8.8e-35
Identity = 91/151 (60.26%), Postives = 102/151 (67.55%), Query Frame = 0


Query: 156 ASYKINKVNPRELNPYFKENGTGCPEESDRLKSDIDKLPPSRVVGDG------------- 215
           A  +I KVNPRELNPYFK+NGTG PEESDR KSDIDKLPP R+VGDG             
Sbjct: 198 APKEITKVNPRELNPYFKDNGTGYPEESDRTKSDIDKLPPPRIVGDGGASWRLKALKRAE 257

Query: 216 --------------TTLWFSWPTCCLSVAASKVAPSRSHLHAIENRKRGLTSH-QPSDSQ 275
                            W S     +SVAA KVAPSRSHLHAI NRKRGLTS  Q S+SQ
Sbjct: 258 EQAARDGRRLEEVVEERWGSLGQLAVSVAARKVAPSRSHLHAIRNRKRGLTSEDQVSNSQ 317

Query: 276 NEGYSGKTSAREHLKDISSRNPEMREPKLRE 279
           NE  SGK+SAR++LKDISSR+PEMREPK+R+
Sbjct: 318 NESDSGKSSARDYLKDISSRHPEMREPKVRD 348

[Close]

BLAST of MELO3C029178 vs. ExPASy TrEMBL
Match: A0A6J1KFU1 (LOW QUALITY PROTEIN: CWF19-like protein 2 OS=Cucurbita maxima OX=3661 GN=LOC111493513 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 8.8e-35
Identity = 91/151 (60.26%), Postives = 102/151 (67.55%), Query Frame = 0


Query: 156 ASYKINKVNPRELNPYFKENGTGCPEESDRLKSDIDKLPPSRVVGDG------------- 215
           A  +I KVNPRELNPYFK+NGTG PEESDR KSDIDKLPP R+VGDG             
Sbjct: 182 APKEITKVNPRELNPYFKDNGTGYPEESDRTKSDIDKLPPPRIVGDGGASWRLKALKRAE 241

Query: 216 --------------TTLWFSWPTCCLSVAASKVAPSRSHLHAIENRKRGLTSH-QPSDSQ 275
                            W S     +SVAA KVAPSRSHLHAI NRKRGLTS  Q S+SQ
Sbjct: 242 EQAARDGRKLEEVVEERWGSLGQLAVSVAARKVAPSRSHLHAIRNRKRGLTSEDQVSNSQ 301

Query: 276 NEGYSGKTSAREHLKDISSRNPEMREPKLRE 279
           NE  SGK+SAR++LKDISSR+PEMREPK+R+
Sbjct: 302 NESDSGKSSARDYLKDISSRHPEMREPKVRD 332

[Close]

BLAST of MELO3C029178 vs. TAIR 10
Match: AT3G57300.2 (INO80 ortholog )

HSP 1 Score: 96.7 bits (239), Expect = 4.6e-20
Identity = 52/100 (52.00%), Postives = 65/100 (65.00%), Query Frame = 0


Query: 313 TSMNGGFHILITSYQLLVSDEKCFRHVKWQYMVLDEAQAIKV-------------LRDRI 372
           + M+ GFHILITSYQLLV+DEK FR VKWQYMVLDEAQAIK               R+R+
Sbjct: 719 SDMDAGFHILITSYQLLVTDEKYFRRVKWQYMVLDEAQAIKSSSSIRWKTLLSFNCRNRL 778

Query: 373 FINKKK-KNDENESKSVTCVMLPTLVDNHKQFNEWFSKGL 399
            +     +N+  E  ++   ++P L DNH QFNEWFSKG+
Sbjct: 779 LLTGTPIQNNMAELWALLHFIMPMLFDNHDQFNEWFSKGI 818

[Close]

BLAST of MELO3C029178 vs. TAIR 10
Match: AT3G57300.1 (INO80 ortholog )

HSP 1 Score: 94.4 bits (233), Expect = 2.3e-19
Identity = 51/97 (52.58%), Postives = 63/97 (64.95%), Query Frame = 0


Query: 316 NGGFHILITSYQLLVSDEKCFRHVKWQYMVLDEAQAIKV-------------LRDRIFIN 375
           + GFHILITSYQLLV+DEK FR VKWQYMVLDEAQAIK               R+R+ + 
Sbjct: 689 DAGFHILITSYQLLVTDEKYFRRVKWQYMVLDEAQAIKSSSSIRWKTLLSFNCRNRLLLT 748

Query: 376 KKK-KNDENESKSVTCVMLPTLVDNHKQFNEWFSKGL 399
               +N+  E  ++   ++P L DNH QFNEWFSKG+
Sbjct: 749 GTPIQNNMAELWALLHFIMPMLFDNHDQFNEWFSKGI 785

[Close]

BLAST of MELO3C029178 vs. TAIR 10
Match: AT1G56290.1 (CwfJ-like family protein )

HSP 1 Score: 85.5 bits (210), Expect = 1.1e-16
Identity = 58/145 (40.00%), Postives = 72/145 (49.66%), Query Frame = 0


Query: 159 KINKVNPRELNPYFKENGTGCPEESDRLKSDIDKLPPSRVVGDGTTLW------------ 218
           ++ KVNPRELNPY KENGTG PEE    K   D+L PS VVGDG   W            
Sbjct: 108 EVTKVNPRELNPYLKENGTGYPEEESEKKHGKDQLLPSSVVGDGGASWRMKALKRAKEQA 167

Query: 219 ---------------FSWPTCCLSVAASKVAPSRSHLHAIENRKRGLTSHQPSDSQ-NEG 276
                           S      SVA+ + APSR+HL+AI NR+RG      S+ +  E 
Sbjct: 168 AREGLRLEEVAGERYGSLGNLVESVASQRAAPSRAHLNAINNRRRGENEKNDSEKKPKER 227

[Close]

BLAST of MELO3C029178 vs. TAIR 10
Match: AT3G12810.1 (SNF2 domain-containing protein / helicase domain-containing protein )

HSP 1 Score: 60.1 bits (144), Expect = 4.8e-09
Identity = 29/90 (32.22%), Postives = 51/90 (56.67%), Query Frame = 0


Query: 319 FHILITSYQLLVSDEKCFRHVKWQYMVLDEAQAIKVLRDR-----IFINKKKK------- 378
           FH+ IT+Y+L++ D K F+  KW+Y++LDEA  IK  + +     +  N K++       
Sbjct: 636 FHVCITTYRLVIQDSKMFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTP 695

Query: 379 --NDENESKSVTCVMLPTLVDNHKQFNEWF 395
             ND  E  S+   ++P +  +H++F +WF
Sbjct: 696 LQNDLMELWSLMHFLMPHVFQSHQEFKDWF 725

[Close]

BLAST of MELO3C029178 vs. TAIR 10
Match: AT2G46020.2 (transcription regulatory protein SNF2, putative )

HSP 1 Score: 53.5 bits (127), Expect = 4.5e-07
Identity = 26/92 (28.26%), Postives = 48/92 (52.17%), Query Frame = 0


Query: 319  FHILITSYQLLVSDEKCFRHVKWQYMVLDEAQAIK--------------VLRDRIFINKK 378
            F++L+T+Y+ ++ D      V W+Y+++DEAQ +K                R  +     
Sbjct: 1081 FNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTP 1140

Query: 379  KKNDENESKSVTCVMLPTLVDNHKQFNEWFSK 397
             +ND  E  S+  ++LP + DN K F++WF++
Sbjct: 1141 LQNDLKELWSLLNLLLPDVFDNRKAFHDWFAQ 1172

The following BLAST results are available for this feature:

BLAST of MELO3C029178 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008450259.1	3.4e-41	60.98	PREDICTED: CWF19-like protein 2 homolog [Cucumis melo] >XP_008450260.1 PREDICTED...	[more]
TYK14531.1	5.8e-41	68.84	CWF19-like protein 2-like protein [Cucumis melo var. makuwa]	[more]
XP_031741491.1	1.0e-37	58.54	CWF19-like protein 2 isoform X3 [Cucumis sativus]	[more]
XP_011654476.1	1.0e-37	58.54	CWF19-like protein 2 isoform X1 [Cucumis sativus]	[more]
XP_031741490.1	1.0e-37	58.54	CWF19-like protein 2 isoform X2 [Cucumis sativus] >KAE8648194.1 hypothetical pro...	[more]

BLAST of MELO3C029178 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8RXS6	3.2e-18	52.58	Chromatin-remodeling ATPase INO80 OS=Arabidopsis thaliana OX=3702 GN=INO80 PE=2 ...	[more]
Q4PGL2	1.5e-15	43.27	Chromatin-remodeling ATPase INO80 OS=Ustilago maydis (strain 521 / FGSC 9021) OX...	[more]
Q9VDY1	1.7e-14	44.33	Chromatin-remodeling ATPase INO80 OS=Drosophila melanogaster OX=7227 GN=Ino80 PE...	[more]
Q9ULG1	6.3e-14	44.68	Chromatin-remodeling ATPase INO80 OS=Homo sapiens OX=9606 GN=INO80 PE=1 SV=2	[more]
Q6ZPV2	6.3e-14	44.68	Chromatin-remodeling ATPase INO80 OS=Mus musculus OX=10090 GN=Ino80 PE=1 SV=2	[more]

BLAST of MELO3C029178 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BPU3	1.6e-41	60.98	CWF19-like protein 2 homolog OS=Cucumis melo OX=3656 GN=LOC103491921 PE=4 SV=1	[more]
A0A5D3CRV4	2.8e-41	68.84	CWF19-like protein 2-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A0A0KMK6	2.2e-38	64.63	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G033990 PE=4 SV=1	[more]
A0A6J1G3U6	8.8e-35	60.26	CWF19-like protein 2 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111450520 PE...	[more]
A0A6J1KFU1	8.8e-35	60.26	LOW QUALITY PROTEIN: CWF19-like protein 2 OS=Cucurbita maxima OX=3661 GN=LOC1114...	[more]

BLAST of MELO3C029178 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G57300.2	4.6e-20	52.00	INO80 ortholog	[more]
AT3G57300.1	2.3e-19	52.58	INO80 ortholog	[more]
AT1G56290.1	1.1e-16	40.00	CwfJ-like family protein	[more]
AT3G12810.1	4.8e-09	32.22	SNF2 domain-containing protein / helicase domain-containing protein	[more]
AT2G46020.2	4.5e-07	28.26	transcription regulatory protein SNF2, putative	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038718	SNF2-like, N-terminal domain superfamily	GENE3D	3.40.50.10810		coord: 246..378 e-value: 2.9E-9 score: 38.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 240..254
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 255..273
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 234..273
None	No IPR available	PANTHER	PTHR45685	HELICASE SRCAP-RELATED	coord: 314..353
IPR031047	DNA helicase Ino80	PANTHER	PTHR45685:SF2	CHROMATIN-REMODELING ATPASE INO80	coord: 314..353
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 315..398

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C029178.1	MELO3C029178.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006338	chromatin remodeling
biological_process	GO:0006281	DNA repair
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0031011	Ino80 complex
cellular_component	GO:0005634	nucleus
molecular_function	GO:0016887	ATP hydrolysis activity