MELO3C029172 (gene) Melon (DHL92) v4

Overview


Name	MELO3C029172
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	CASP-like protein
Location	chr01: 26149376 .. 26149734 (+)
RNA-Seq Expression	MELO3C029172
Synteny	MELO3C029172

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAGTTTATCGATTAAGAAAATTAAGAAGGAGGAATTGAGGAAGAAGATCTTGTTAGGGTTTAGAATTTGTGGATTTGCCTTCTGTTTGGTCTCGGTTTCGGTTATGGCTTCTGATAAGGATCAGGGCTGGGCTTCGGATTCATTCTATCGCTATAAGGAATTCCGGTAATCAATTCGTTCAATGAAACCATTTCTTCCTATTGAAATTTCTTATGCAATTTCCTTCTAACTTCAATTGAATAGGATATTCTAAAATTGATTCAATTTGGGAATTTCATTAAATTTGTAGGTACTGTATGGCAGTGAATGTTATTGGATTTGTTTACTCTGCACTTCAATCCTATGATCTTGTCT

mRNA sequence

ATGGAGAGTTTATCGATTAAGAAAATTAAGAAGGAGGAATTGAGGAAGAAGATCTTGTTAGGGTTTAGAATTTGTGGATTTGCCTTCTGTTTGGTCTCGGTTTCGGTTATGGCTTCTGATAAGGATCAGGGCTGGGCTTCGGATTCATTCTATCGCTATAAGGAATTCCGGTACTGTATGGCAGTGAATGTTATTGGATTTGTTTACTCTGCACTTCAATCCTATGATCTTGTCT

Coding sequence (CDS)

ATGGAGAGTTTATCGATTAAGAAAATTAAGAAGGAGGAATTGAGGAAGAAGATCTTGTTAGGGTTTAGAATTTGTGGATTTGCCTTCTGTTTGGTCTCGGTTTCGGTTATGGCTTCTGATAAGGATCAGGGCTGGGCTTCGGATTCATTCTATCGCTATAAGGAATTCCGGTACTGTATGGCAGTGAATGTTATTGGATTTGTTTACTCTGCACTTCAATCCTATGATCTTGTC

Protein sequence

MESLSIKKIKKEELRKKILLGFRICGFAFCLVSVSVMASDKDQGWASDSFYRYKEFRYCMAVNVIGFVYSALQSYDLV

Homology

[Close]

BLAST of MELO3C029172 vs. NCBI nr
Match: KAA0062345.1 (coatomer subunit beta'-2-like isoform X3 [Cucumis melo var. makuwa])

HSP 1 Score: 156.0 bits (393), Expect = 1.3e-34
Identity = 77/78 (98.72%), Postives = 77/78 (98.72%), Query Frame = 0


Query: 1   MESLSIKKIKKEELRKKILLGFRICGFAFCLVSVSVMASDKDQGWASDSFYRYKEFRYCM 60
           MESLSIKKIKKEELRKKILLGFRICGFAFCLVSVSVMASDKDQGWA DSFYRYKEFRYCM
Sbjct: 206 MESLSIKKIKKEELRKKILLGFRICGFAFCLVSVSVMASDKDQGWALDSFYRYKEFRYCM 265

Query: 61  AVNVIGFVYSALQSYDLV 79
           AVNVIGFVYSALQSYDLV
Sbjct: 266 AVNVIGFVYSALQSYDLV 283

[Close]

BLAST of MELO3C029172 vs. NCBI nr
Match: TYK26631.1 (CASP-like protein 4A1 [Cucumis melo var. makuwa])

HSP 1 Score: 156.0 bits (393), Expect = 1.3e-34
Identity = 77/78 (98.72%), Postives = 77/78 (98.72%), Query Frame = 0


Query: 1   MESLSIKKIKKEELRKKILLGFRICGFAFCLVSVSVMASDKDQGWASDSFYRYKEFRYCM 60
           MESLSIKKIKKEELRKKILLGFRICGFAFCLVSVSVMASDKDQGWA DSFYRYKEFRYCM
Sbjct: 217 MESLSIKKIKKEELRKKILLGFRICGFAFCLVSVSVMASDKDQGWALDSFYRYKEFRYCM 276

Query: 61  AVNVIGFVYSALQSYDLV 79
           AVNVIGFVYSALQSYDLV
Sbjct: 277 AVNVIGFVYSALQSYDLV 294

[Close]

BLAST of MELO3C029172 vs. NCBI nr
Match: XP_004142358.1 (CASP-like protein 4A3 [Cucumis sativus] >KGN52378.1 hypothetical protein Csa_008911 [Cucumis sativus])

HSP 1 Score: 153.7 bits (387), Expect = 6.6e-34
Identity = 75/78 (96.15%), Postives = 77/78 (98.72%), Query Frame = 0


Query: 1   MESLSIKKIKKEELRKKILLGFRICGFAFCLVSVSVMASDKDQGWASDSFYRYKEFRYCM 60
           ME+LSIKKIK+EELRKKILLGFRICGFAFCLVSVSVMASDKDQGWA DSFYRYKEFRYCM
Sbjct: 174 METLSIKKIKREELRKKILLGFRICGFAFCLVSVSVMASDKDQGWALDSFYRYKEFRYCM 233

Query: 61  AVNVIGFVYSALQSYDLV 79
           AVNVIGFVYSALQSYDLV
Sbjct: 234 AVNVIGFVYSALQSYDLV 251

[Close]

BLAST of MELO3C029172 vs. NCBI nr
Match: XP_008458753.1 (PREDICTED: CASP-like protein 4A1 [Cucumis melo] >KAA0037507.1 CASP-like protein 4A1 [Cucumis melo var. makuwa] >TYK01982.1 CASP-like protein 4A1 [Cucumis melo var. makuwa])

HSP 1 Score: 153.3 bits (386), Expect = 8.7e-34
Identity = 75/78 (96.15%), Postives = 77/78 (98.72%), Query Frame = 0


Query: 1   MESLSIKKIKKEELRKKILLGFRICGFAFCLVSVSVMASDKDQGWASDSFYRYKEFRYCM 60
           MESLSIKKIK+EELRKKILLGFRICGF+FCLVSVSVMASDKDQGWA DSFYRYKEFRYCM
Sbjct: 161 MESLSIKKIKEEELRKKILLGFRICGFSFCLVSVSVMASDKDQGWALDSFYRYKEFRYCM 220

Query: 61  AVNVIGFVYSALQSYDLV 79
           AVNVIGFVYSALQSYDLV
Sbjct: 221 AVNVIGFVYSALQSYDLV 238

[Close]

BLAST of MELO3C029172 vs. NCBI nr
Match: XP_022133823.1 (CASP-like protein 4A1 [Momordica charantia] >XP_022133824.1 CASP-like protein 4A1 [Momordica charantia])

HSP 1 Score: 144.4 bits (363), Expect = 4.0e-31
Identity = 69/78 (88.46%), Postives = 75/78 (96.15%), Query Frame = 0


Query: 1   MESLSIKKIKKEELRKKILLGFRICGFAFCLVSVSVMASDKDQGWASDSFYRYKEFRYCM 60
           M SLS+KK+K+EE+RKKILLGFRICGFAFCLVS SVMASDK+QGWA DSFYRYKEFRYCM
Sbjct: 149 MASLSMKKMKREEMRKKILLGFRICGFAFCLVSFSVMASDKNQGWALDSFYRYKEFRYCM 208

Query: 61  AVNVIGFVYSALQSYDLV 79
           AVNVIGF+YSALQSYDLV
Sbjct: 209 AVNVIGFLYSALQSYDLV 226

[Close]

BLAST of MELO3C029172 vs. ExPASy Swiss-Prot
Match: Q9FNE8 (CASP-like protein 4A1 OS=Arabidopsis thaliana OX=3702 GN=At5g40300 PE=2 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.1e-18
Identity = 44/72 (61.11%), Postives = 52/72 (72.22%), Query Frame = 0


Query: 7   KKIKKEELRKKILLGFRICGFAFCLVSVSVMASDKDQGWASDSFYRYKEFRYCMAVNVIG 66
           ++ K   L +K LLGFR+  F  CLVS SVM SD+D+GWA DSFY YKEFR+C+A NVIG
Sbjct: 111 RESKWASLIRKALLGFRVIAFVSCLVSFSVMVSDRDKGWAHDSFYNYKEFRFCLAANVIG 170

Query: 67  FVYSALQSYDLV 79
           FVYS     DLV
Sbjct: 171 FVYSGFMICDLV 182

[Close]

BLAST of MELO3C029172 vs. ExPASy Swiss-Prot
Match: D7MMW4 (CASP-like protein 4A2 OS=Arabidopsis lyrata subsp. lyrata OX=81972 GN=ARALYDRAFT_919556 PE=3 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 5.0e-16
Identity = 36/72 (50.00%), Postives = 53/72 (73.61%), Query Frame = 0


Query: 5   SIKKIKKEELRKKILLGFRICGFAFCLVSVSVMASDKDQGWASDSFYRYKEFRYCMAVNV 64
           ++ + ++++L     LGFRI     C++S S+MA+DK QGW+ DS+ RYKE+RYC+AVNV
Sbjct: 136 AVNRARRDDLVSVTALGFRITEVILCVISFSIMAADKTQGWSGDSYDRYKEYRYCLAVNV 195

Query: 65  IGFVYSALQSYD 77
           I FVYSA ++ D
Sbjct: 196 IAFVYSAFEACD 207

[Close]

BLAST of MELO3C029172 vs. ExPASy Swiss-Prot
Match: Q501G6 (CASP-like protein 4A2 OS=Arabidopsis thaliana OX=3702 GN=At5g62820 PE=2 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 1.4e-15
Identity = 36/72 (50.00%), Postives = 52/72 (72.22%), Query Frame = 0


Query: 5   SIKKIKKEELRKKILLGFRICGFAFCLVSVSVMASDKDQGWASDSFYRYKEFRYCMAVNV 64
           ++ + + ++L     LGFRI     C++S S+MA+DK QGW+ DS+ RYKE+RYC+AVNV
Sbjct: 136 TVNRARGDDLVSLTALGFRITEVILCVISFSIMAADKTQGWSGDSYDRYKEYRYCLAVNV 195

Query: 65  IGFVYSALQSYD 77
           I FVYSA ++ D
Sbjct: 196 IAFVYSAFEACD 207

[Close]

BLAST of MELO3C029172 vs. ExPASy Swiss-Prot
Match: D7LIR2 (CASP-like protein 4A3 OS=Arabidopsis lyrata subsp. lyrata OX=81972 GN=ARALYDRAFT_482607 PE=3 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 1.9e-15
Identity = 33/72 (45.83%), Postives = 55/72 (76.39%), Query Frame = 0


Query: 6   IKKIKKEELRKKILLGFRICGFAFCLVSVSVMASDKDQGWASDSFYRYKEFRYCMAVNVI 65
           +++ ++EE+ K + LGFR+      L+S S+MA+DK +GW+ DSF RYKE+R+C++VNV+
Sbjct: 116 LRRSRREEIVKFVALGFRLSEVVLALISFSIMAADKTKGWSGDSFDRYKEYRFCLSVNVV 175

Query: 66  GFVYSALQSYDL 78
            F+Y++ Q+ DL
Sbjct: 176 AFIYASFQACDL 187

[Close]

BLAST of MELO3C029172 vs. ExPASy Swiss-Prot
Match: Q84WP5 (CASP-like protein 4A3 OS=Arabidopsis thaliana OX=3702 GN=At2g36330 PE=2 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 2.5e-15
Identity = 36/75 (48.00%), Postives = 55/75 (73.33%), Query Frame = 0


Query: 3   SLSIKKIKKEELRKKILLGFRICGFAFCLVSVSVMASDKDQGWASDSFYRYKEFRYCMAV 62
           S  +++ ++EE+ K   LGFR+      L+S S+MA+DK +GW+ DSF RYKE+R+C++V
Sbjct: 120 SAILRRSRREEVVKFSALGFRLSEVVLALISFSIMAADKTKGWSGDSFDRYKEYRFCLSV 179

Query: 63  NVIGFVYSALQSYDL 78
           NV+ FVYS+ Q+ DL
Sbjct: 180 NVVAFVYSSFQACDL 194

[Close]

BLAST of MELO3C029172 vs. ExPASy TrEMBL
Match: A0A5A7V8X3 (Coatomer subunit beta'-2-like isoform X3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold154G001050 PE=3 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 6.5e-35
Identity = 77/78 (98.72%), Postives = 77/78 (98.72%), Query Frame = 0


Query: 1   MESLSIKKIKKEELRKKILLGFRICGFAFCLVSVSVMASDKDQGWASDSFYRYKEFRYCM 60
           MESLSIKKIKKEELRKKILLGFRICGFAFCLVSVSVMASDKDQGWA DSFYRYKEFRYCM
Sbjct: 206 MESLSIKKIKKEELRKKILLGFRICGFAFCLVSVSVMASDKDQGWALDSFYRYKEFRYCM 265

Query: 61  AVNVIGFVYSALQSYDLV 79
           AVNVIGFVYSALQSYDLV
Sbjct: 266 AVNVIGFVYSALQSYDLV 283

[Close]

BLAST of MELO3C029172 vs. ExPASy TrEMBL
Match: A0A5D3DS99 (CASP-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G002760 PE=3 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 6.5e-35
Identity = 77/78 (98.72%), Postives = 77/78 (98.72%), Query Frame = 0


Query: 1   MESLSIKKIKKEELRKKILLGFRICGFAFCLVSVSVMASDKDQGWASDSFYRYKEFRYCM 60
           MESLSIKKIKKEELRKKILLGFRICGFAFCLVSVSVMASDKDQGWA DSFYRYKEFRYCM
Sbjct: 217 MESLSIKKIKKEELRKKILLGFRICGFAFCLVSVSVMASDKDQGWALDSFYRYKEFRYCM 276

Query: 61  AVNVIGFVYSALQSYDLV 79
           AVNVIGFVYSALQSYDLV
Sbjct: 277 AVNVIGFVYSALQSYDLV 294

[Close]

BLAST of MELO3C029172 vs. ExPASy TrEMBL
Match: A0A0A0KS01 (CASP-like protein OS=Cucumis sativus OX=3659 GN=Csa_5G630810 PE=3 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 3.2e-34
Identity = 75/78 (96.15%), Postives = 77/78 (98.72%), Query Frame = 0


Query: 1   MESLSIKKIKKEELRKKILLGFRICGFAFCLVSVSVMASDKDQGWASDSFYRYKEFRYCM 60
           ME+LSIKKIK+EELRKKILLGFRICGFAFCLVSVSVMASDKDQGWA DSFYRYKEFRYCM
Sbjct: 174 METLSIKKIKREELRKKILLGFRICGFAFCLVSVSVMASDKDQGWALDSFYRYKEFRYCM 233

Query: 61  AVNVIGFVYSALQSYDLV 79
           AVNVIGFVYSALQSYDLV
Sbjct: 234 AVNVIGFVYSALQSYDLV 251

[Close]

BLAST of MELO3C029172 vs. ExPASy TrEMBL
Match: A0A5A7T7H8 (CASP-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold808G00890 PE=3 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 4.2e-34
Identity = 75/78 (96.15%), Postives = 77/78 (98.72%), Query Frame = 0


Query: 1   MESLSIKKIKKEELRKKILLGFRICGFAFCLVSVSVMASDKDQGWASDSFYRYKEFRYCM 60
           MESLSIKKIK+EELRKKILLGFRICGF+FCLVSVSVMASDKDQGWA DSFYRYKEFRYCM
Sbjct: 161 MESLSIKKIKEEELRKKILLGFRICGFSFCLVSVSVMASDKDQGWALDSFYRYKEFRYCM 220

Query: 61  AVNVIGFVYSALQSYDLV 79
           AVNVIGFVYSALQSYDLV
Sbjct: 221 AVNVIGFVYSALQSYDLV 238

[Close]

BLAST of MELO3C029172 vs. ExPASy TrEMBL
Match: A0A1S3C844 (CASP-like protein OS=Cucumis melo OX=3656 GN=LOC103498066 PE=3 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 4.2e-34
Identity = 75/78 (96.15%), Postives = 77/78 (98.72%), Query Frame = 0


Query: 1   MESLSIKKIKKEELRKKILLGFRICGFAFCLVSVSVMASDKDQGWASDSFYRYKEFRYCM 60
           MESLSIKKIK+EELRKKILLGFRICGF+FCLVSVSVMASDKDQGWA DSFYRYKEFRYCM
Sbjct: 161 MESLSIKKIKEEELRKKILLGFRICGFSFCLVSVSVMASDKDQGWALDSFYRYKEFRYCM 220

Query: 61  AVNVIGFVYSALQSYDLV 79
           AVNVIGFVYSALQSYDLV
Sbjct: 221 AVNVIGFVYSALQSYDLV 238

[Close]

BLAST of MELO3C029172 vs. TAIR 10
Match: AT5G40300.1 (Uncharacterised protein family (UPF0497) )

HSP 1 Score: 93.6 bits (231), Expect = 7.6e-20
Identity = 44/72 (61.11%), Postives = 52/72 (72.22%), Query Frame = 0


Query: 7   KKIKKEELRKKILLGFRICGFAFCLVSVSVMASDKDQGWASDSFYRYKEFRYCMAVNVIG 66
           ++ K   L +K LLGFR+  F  CLVS SVM SD+D+GWA DSFY YKEFR+C+A NVIG
Sbjct: 111 RESKWASLIRKALLGFRVIAFVSCLVSFSVMVSDRDKGWAHDSFYNYKEFRFCLAANVIG 170

Query: 67  FVYSALQSYDLV 79
           FVYS     DLV
Sbjct: 171 FVYSGFMICDLV 182

[Close]

BLAST of MELO3C029172 vs. TAIR 10
Match: AT5G62820.1 (Uncharacterised protein family (UPF0497) )

HSP 1 Score: 83.2 bits (204), Expect = 1.0e-16
Identity = 36/72 (50.00%), Postives = 52/72 (72.22%), Query Frame = 0


Query: 5   SIKKIKKEELRKKILLGFRICGFAFCLVSVSVMASDKDQGWASDSFYRYKEFRYCMAVNV 64
           ++ + + ++L     LGFRI     C++S S+MA+DK QGW+ DS+ RYKE+RYC+AVNV
Sbjct: 136 TVNRARGDDLVSLTALGFRITEVILCVISFSIMAADKTQGWSGDSYDRYKEYRYCLAVNV 195

Query: 65  IGFVYSALQSYD 77
           I FVYSA ++ D
Sbjct: 196 IAFVYSAFEACD 207

[Close]

BLAST of MELO3C029172 vs. TAIR 10
Match: AT2G36330.1 (Uncharacterised protein family (UPF0497) )

HSP 1 Score: 82.4 bits (202), Expect = 1.7e-16
Identity = 36/75 (48.00%), Postives = 55/75 (73.33%), Query Frame = 0


Query: 3   SLSIKKIKKEELRKKILLGFRICGFAFCLVSVSVMASDKDQGWASDSFYRYKEFRYCMAV 62
           S  +++ ++EE+ K   LGFR+      L+S S+MA+DK +GW+ DSF RYKE+R+C++V
Sbjct: 120 SAILRRSRREEVVKFSALGFRLSEVVLALISFSIMAADKTKGWSGDSFDRYKEYRFCLSV 179

Query: 63  NVIGFVYSALQSYDL 78
           NV+ FVYS+ Q+ DL
Sbjct: 180 NVVAFVYSSFQACDL 194

The following BLAST results are available for this feature:

BLAST of MELO3C029172 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0062345.1	1.3e-34	98.72	coatomer subunit beta'-2-like isoform X3 [Cucumis melo var. makuwa]	[more]
TYK26631.1	1.3e-34	98.72	CASP-like protein 4A1 [Cucumis melo var. makuwa]	[more]
XP_004142358.1	6.6e-34	96.15	CASP-like protein 4A3 [Cucumis sativus] >KGN52378.1 hypothetical protein Csa_008...	[more]
XP_008458753.1	8.7e-34	96.15	PREDICTED: CASP-like protein 4A1 [Cucumis melo] >KAA0037507.1 CASP-like protein ...	[more]
XP_022133823.1	4.0e-31	88.46	CASP-like protein 4A1 [Momordica charantia] >XP_022133824.1 CASP-like protein 4A...	[more]

BLAST of MELO3C029172 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FNE8	1.1e-18	61.11	CASP-like protein 4A1 OS=Arabidopsis thaliana OX=3702 GN=At5g40300 PE=2 SV=1	[more]
D7MMW4	5.0e-16	50.00	CASP-like protein 4A2 OS=Arabidopsis lyrata subsp. lyrata OX=81972 GN=ARALYDRAFT...	[more]
Q501G6	1.4e-15	50.00	CASP-like protein 4A2 OS=Arabidopsis thaliana OX=3702 GN=At5g62820 PE=2 SV=1	[more]
D7LIR2	1.9e-15	45.83	CASP-like protein 4A3 OS=Arabidopsis lyrata subsp. lyrata OX=81972 GN=ARALYDRAFT...	[more]
Q84WP5	2.5e-15	48.00	CASP-like protein 4A3 OS=Arabidopsis thaliana OX=3702 GN=At2g36330 PE=2 SV=1	[more]

BLAST of MELO3C029172 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V8X3	6.5e-35	98.72	Coatomer subunit beta'-2-like isoform X3 OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5D3DS99	6.5e-35	98.72	CASP-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G00...	[more]
A0A0A0KS01	3.2e-34	96.15	CASP-like protein OS=Cucumis sativus OX=3659 GN=Csa_5G630810 PE=3 SV=1	[more]
A0A5A7T7H8	4.2e-34	96.15	CASP-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold808G00...	[more]
A0A1S3C844	4.2e-34	96.15	CASP-like protein OS=Cucumis melo OX=3656 GN=LOC103498066 PE=3 SV=1	[more]

BLAST of MELO3C029172 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G40300.1	7.6e-20	61.11	Uncharacterised protein family (UPF0497)	[more]
AT5G62820.1	1.0e-16	50.00	Uncharacterised protein family (UPF0497)	[more]
AT2G36330.1	1.7e-16	48.00	Uncharacterised protein family (UPF0497)	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006702	Casparian strip membrane protein domain	PFAM	PF04535	DUF588	coord: 16..75 e-value: 9.1E-17 score: 61.2
None	No IPR available	PANTHER	PTHR11615	NITRATE, FORMATE, IRON DEHYDROGENASE	coord: 4..78
None	No IPR available	PANTHER	PTHR11615:SF279	CASP-LIKE PROTEIN 4A1	coord: 4..78

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C029172.1	MELO3C029172.1	mRNA