MELO3C029145 (gene) Melon (DHL92) v4

Overview
NameMELO3C029145
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionF-box protein
Locationchr01: 24378348 .. 24382213 (-)
RNA-Seq ExpressionMELO3C029145
SyntenyMELO3C029145
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CAAAGACTTCACAATCGTCTCTTTCGTCTGCTCGCAAGCCGCAGCTTAAGACTTCTTGCGTTCGTCCGTCGCTCAAGCGAAGTTGGGTACGTCTGCCGTCGTTCAGAAGTTCGTCGCGCATCGTTTCTACTCGCGACAAGTTCATTCGCCGCCATTCACAAGTTCGTCGCAAGCCACAAGTTCGCCACAAGTCACCGCTGCTGAAGCTTTGTTGCGTTCATACACCGTTTTCTAGTGAAGTTGCTTGCGTCCGTCGCCTAAAAGGTTGTCACTATTCTACGAAATCTTTGTACTGTGTATTTATGTTGCTGAAGAGGCGTGGTGGAGAGATTGAGAATGTAGTGTTTGGTGCTATGATGCGGACATTGAAAATGAAGTTGAATAGACTATGGGTTGATCTACTGGCTCATATTTTTTCTATGATCACATCCTTCATCAATTTGGCTTAGTAATTCATTTTCAATCTCGGCTTTGTTGAATTTTTTTTCTTCAATTGCTATTTTTATTTCCCCCTAATTTTGAGGGTTTATGCGATTGTGGAAAAACGCAAGGCGTGTGGCGTATGTAGAAAATGGAAGGAAGGAGTTAAATTGTCCCTCGGTAGGAGAAATAGTTTGAGCTTTGTTGGTTGGAAGATGGATGATAACTCCACTGCTCGCCTTATTCGCCATGCCTGCAGTCTTCGGGAGCTGGACATGTAATCTCTCTCTCTCTTGAAATTTCGTGAAATTTTCATCAGTTTGCTTTTCTTCGAGTAGTTTCTTATTACAGATAGTTACTGGTGTTGTGTGTTGTGAGATGAAACTAGTGTTTCAAATTCGCTAGGTTAATCGATTCAATTGGCTTCGCTTTCCGATTACGAACCACAAAAACAGAGGTTTATCATAAGATTGTGAGGTTGTTTGGGAATAATCTAGGGAGAAGGTTATTTGAAATTGTGTTTGTAAATCCGATGTTATATTATTGATGTTTATGGTTCGTGTTCTTCAACTCAATGAGCCGTTGGGGTTGCCAAATAACAGACCATGGATTGTACGAAATCTCTCTTGCAAAGTGCATTCCCAATCATTTGTAAATTAGGAATAACTTGACATGTTATGTCTTATAGTTTGACAGATTATACCTTCTGTACATTCTCTTAAAAGTTTTGATGCGGATGACAAAATGTAGTTACAATATTTATGTCTGTTTAGATGCATGAGAAGTAGATGGTAAGATGCTTTTTGTTATTAAACTTGTATAAGTAGTAACCATATTTGGTCGATTCAAATAGCTTTTCGACATTTGAACTGAACCATTGCTAAAATAAAGTTGGGAGGGTTATTATGAGTTTCATTAGTTTTTCATTCAATATAGAACAAAAATAATCACGATTCAATATATGACGATGTGTTTACTAACAGAGAGTAATAAATAATAATAAAAATGTTTAACTCGTTTTATTATGAGAGCTTCAATATTTTATTATGTGTTTACTAATAAAGAGTGAGAAACAATAATTAAAAAATTGGGACCTATTTTATACTAATTGGCGTTGTTTACCCAAACTAGGAATGAGAATAAATTGTAGGGCCTAACTTGTACATATTGGTTTTTTTAGTATCAATGTTCATGACTTCATTCTCAGTTAAGCTGCAGATATTGTCTTTCTCAAATGCGTTTCGTAGGGGTTCAAGTTTATGTTCACGACTTCATGGAAGGAGAGAAAGAATGATGAGAATCTTCAACTACAAAACCCGAAAGCATAAATCTGTAATGTTTTTTCTTCTCCACTTTTAGGTTTTTCATTTGCTTTAGCCTATGTTCTCTTAAAGAAGTTACTGATTTTGTTTAAAACAAAGTCTTTTTTTTTTAAAAAAAAAAAAGGCATCTAAGTACTATGACTTCTCATGTGTTCTCTCTTATTCTTTTGATAGCTATGTGAACAACCATCCACTAATTCTTAAAGTATGTTGTAAGCGTCCAATACTTCATAGAGATCCTTCATTTTCTGTCTATTTCAAGGACATAATTCTAGTGTCAAAGGTCTTAGACTTAAAAGTTAGAGTTCTTAGTTTTAATGTTGTTCTCATTTTGTTTGTAGATTTCAAGGAGTTGATGATACCAATCGTGAGACTTTGAGTTTGGAGTTATCTAAGAGTGTGGGGTTTGGAGGAGGGTGATGTCTTTGTTTCTTATTATTACATATACTTTGTATTTTATGATTAAGAATGATGATCATAACTTGTTTTGTAATATGAATAAGAACGATGTTCCTAAGTTGTAAGTTTGTAATGACCAACTATATGTATGTTTAAGGATATATATATGCAATTTATTAGTTCTTTGATTGAAAGTTTGGGTTGATTCAATTTTTCAATTGATGTGTATTTTAGTTTTGTTGGACTTCAAAACAAGTGAATATAAGATATATGGATATTTTAAAATATATAATTTTTTATTTGAACAAACCTTATATACTTATACCTATAAACTGTCAAGTATAATTTCACTTGACATGTAAAACCTGTCAAAAATAAAACCTCCTTATTCTTTACACTGGATTAGTTGACGCATAAAAACTGTCAAGTATATTTATATACTTGACGTTTTCTTAATGTCAAGTATAATTATACTTGACACTTAGAAACTGTCAAGTAAACCTCCCTTATTCTTTACACTAGATTAGTTGACACATTGAAAAGCGTCAAGTAAACCCAGTTTTGTAGTAGTGAAATGTTTTCTATGCTCGAATACAAGTTTATGAATAGTTCATGATTTCTGTGAATGGTTTCAAGTCATAGTTTCAAGTTTAGGTTTTATGATGAAATTTATACATAAGCACGTTAATATTGATTTTTTGAAAAGTAGTTGAAACAATATCATTTTAAACAAGTATTGTTTTTAGATTTTCAGTTTTCCACAAACAATTTGAGTAAGTTTGAGTCTTGTGAAAGATAAAGATAACAAGCACATTTTTAATGTTTTCATATGATTTTCTGAGATTTCTATTAACTACATGATAGAGATGTTAAGCCTGAGGTTGTATAGTACCATGTGCACACATGTTAGATTCTGTTATTGACGTTAAGCGTACTCATGAGTGCTGTCGTGGGTGCTAGATGAGTCCCACTACGACAAAGATGATAGGAGTGTTGGACGACCCCACAACATTGTAGAGCTAGTAAACGTTGGTTGTACTGAGTGTGCCCTACAACGTAGATTTGTCATGTTAGTTAAAATGTGTAATATACTAGGTATGCCTTGCTAGATTTCAATAACGTACATATTGAGTATTTAAGAAAGCTGTTATTATTACACGTTTATATTTAATGTTTTGATTAAACAGATTCATGTGTGTAAGGTTTATCATATGCTCTAATTTCTAGATTTAAAATTCTAGATTTAGTCACATAATAGGTTTTATAACTTACCCTTTCAAAATATTTTTCCTCTCTCTAGGTAGAGATTGAGCTCTCAGTGTCTGATAAGCTGCCTTAGTATGCTGAAAGCTCCTAATTGCAAGTACGTGGGTGGAGTTGTACATCGAGTTTGTTTTGTTATCTTGTATATGTCTTTATAAGATTTAGATACTTTACAGTTTGTGTAAGCTATAGGTGTTGTGATTGGGTAAACCTTAGTTCGATATCTTTTTGGTTATGATGTCTTCATCAAGTTTATTTGTTAAGTGAGTTATTTCAGAGCTACACCTAATGTACATCTATGGGTTGTCTAAGTTCCGTTGTGTTGTGTTTCATATTAAGTATTTTATGTATAAGATTAGCCTGTTTATCAGGTTCATCAAGAGTTCATCAGAGTTGGCAGGTGTCGTTCGAGGAGAATGATGTTTGTCAACTTCACACCATCTTTTGGGATAAGCTAGCCGG

mRNA sequence

CAAAGACTTCACAATCGTCTCTTTCGTCTGCTCGCAAGCCGCAGCTTAAGACTTCTTGCGTTCGTCCGTCGCTCAAGCGAAGTTGGGTACGTCTGCCGTCGTTCAGAAGTTCGTCGCGCATCGTTTCTACTCGCGACAAGTTCATTCGCCGCCATTCACAAGTTCGTCGCAAGCCACAAGTTCGCCACAAGTCACCGCTGCTGAAGCTTTGTTGCGTTCATACACCGTTTTCTAGTGAAGTTGCTTGCGTCCGTCGCCTAAAAGGTTGTCACTATTCTACGAAATCTTTGTACTGTGTATTTATGTTGCTGAAGAGGCGTGGTGGAGAGATTGAGAATGTAGTGTTTGGTGCTATGATGCGGACATTGAAAATGAAGTTGAATAGACTATGGATGGATGATAACTCCACTGCTCGCCTTATTCGCCATGCCTGCAGTCTTCGGGAGCTGGACATATTTCAAGGAGTTGATGATACCAATCGTGAGACTTTGAGTTTGGAGTTATCTAAGAGTGTGGGGTTTGGAGGAGGATTCATGTGTGTAAGATTAGCCTGTTTATCAGGTTCATCAAGAGTTCATCAGAGTTGGCAGGTGTCGTTCGAGGAGAATGATGTTTGTCAACTTCACACCATCTTTTGGGATAAGCTAGCCGG

Coding sequence (CDS)

AAGACTTCACAATCGTCTCTTTCGTCTGCTCGCAAGCCGCAGCTTAAGACTTCTTGCGTTCGTCCGTCGCTCAAGCGAAGTTGGGTACGTCTGCCGTCGTTCAGAAGTTCGTCGCGCATCGTTTCTACTCGCGACAAGTTCATTCGCCGCCATTCACAAGTTCGTCGCAAGCCACAAGTTCGCCACAAGTCACCGCTGCTGAAGCTTTGTTGCGTTCATACACCGTTTTCTAGTGAAGTTGCTTGCGTCCGTCGCCTAAAAGGTTGTCACTATTCTACGAAATCTTTGTACTGTGTATTTATGTTGCTGAAGAGGCGTGGTGGAGAGATTGAGAATGTAGTGTTTGGTGCTATGATGCGGACATTGAAAATGAAGTTGAATAGACTATGGATGGATGATAACTCCACTGCTCGCCTTATTCGCCATGCCTGCAGTCTTCGGGAGCTGGACATATTTCAAGGAGTTGATGATACCAATCGTGAGACTTTGAGTTTGGAGTTATCTAAGAGTGTGGGGTTTGGAGGAGGATTCATGTGTGTAAGATTAGCCTGTTTATCAGGTTCATCAAGAGTTCATCAGAGTTGGCAGGTGTCGTTCGAGGAGAATGATGTTTGTCAACTTCACACCATCTTTTGGGATAAGCTAGCC

Protein sequence

KTSQSSLSSARKPQLKTSCVRPSLKRSWVRLPSFRSSSRIVSTRDKFIRRHSQVRRKPQVRHKSPLLKLCCVHTPFSSEVACVRRLKGCHYSTKSLYCVFMLLKRRGGEIENVVFGAMMRTLKMKLNRLWMDDNSTARLIRHACSLRELDIFQGVDDTNRETLSLELSKSVGFGGGFMCVRLACLSGSSRVHQSWQVSFEENDVCQLHTIFWDKLA
Homology
[Close]
BLAST of MELO3C029145 vs. NCBI nr
Match: KAA0054772.1 (F-box protein [Cucumis melo var. makuwa])

HSP 1 Score: 144.4 bits (363), Expect = 1.1e-30
Identity = 79/133 (59.40%), Postives = 91/133 (68.42%), Query Frame = 0 

Query: 37  SSRIVSTRDKFIRRHSQVRRKPQVRHKSPLLKLCCVHTPFSSEVACVRRLKGCHYSTKSL 96
           SS  VST +KF+ RHSQVR KPQVRHK PLLKLC V TP SSEVA +R LKG HYSTK+L
Sbjct: 37  SSSAVSTHNKFVHRHSQVRCKPQVRHKPPLLKLCYVRTPLSSEVASIRHLKGFHYSTKTL 96

Query: 97  YCVFMLLKRRGGEIENVVFGAMMRTLKMKLNRLWMDDNSTARLIRHACSLRELDIFQGVD 156
           Y VFMLLKRR G  ENVVFGA+MR LKMK NRLW+D    A +     S  +L    G+ 
Sbjct: 97  YAVFMLLKRRSGVFENVVFGAVMRRLKMKSNRLWVD--QLANIFAMITSFTDLAQACGIC 156

Query: 157 DTNRETLSLELSK 170
              +E + L L +
Sbjct: 157 RKWKEGVKLSLGR 167

[Close]
BLAST of MELO3C029145 vs. NCBI nr
Match: KAA0056549.1 (F-box protein [Cucumis melo var. makuwa] >TYK02713.1 F-box protein [Cucumis melo var. makuwa])

HSP 1 Score: 120.2 bits (300), Expect = 2.2e-23
Identity = 78/132 (59.09%), Postives = 83/132 (62.88%), Query Frame = 0 

Query: 1   KTSQSSLSSARKPQLKTSCVRPSLKRSWVRLPSFRSSSRIVSTRDKFIRRHSQVRRKPQV 60
           +TS+SSLSSARKP LKTSCVR SLKRSWVRL SFRSSS     R+KF      VR KPQV
Sbjct: 17  RTSRSSLSSARKPSLKTSCVRLSLKRSWVRLSSFRSSS-----RNKF------VRSKPQV 76

Query: 61  RHKSPLLKLCCVHTPFSSEVACVRRLKGCHYSTKSLYCVFMLLKRRGGEIENVVFGAMMR 120
           RHK PLLKLCCV T  SSEVA VRRLK                          VF  +MR
Sbjct: 77  RHKPPLLKLCCVRTTLSSEVASVRRLK--------------------------VFDVVMR 111

Query: 121 TLKMKLNRLWMD 133
            LKMKLNRLW+D
Sbjct: 137 RLKMKLNRLWVD 111

[Close]
BLAST of MELO3C029145 vs. NCBI nr
Match: TYK21534.1 (protein TIME FOR COFFEE isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 77.0 bits (188), Expect = 2.2e-10
Identity = 59/150 (39.33%), Postives = 72/150 (48.00%), Query Frame = 0 

Query: 41  VSTRDKFIRRHSQVRRKPQVRHKSPLLKLCCVHTPFSSEVACVRRLK------------- 100
           VST +KF+ RH QVRRKP+VRHK P +KL CVH P SSEVA VRRLK             
Sbjct: 8   VSTCNKFVCRHLQVRRKPKVRHKPPPVKLFCVHVPLSSEVAFVRRLKESTDVFTDKDKVA 67

Query: 101 ---------GCHYS---TKSLYCVFMLLK-----------RRGGEIENVVFGAMMRTL-- 149
                     C+Y       L    + L            RRGGE ENVVFGA+MR L  
Sbjct: 68  AHLKFEAILSCNYKQDRNPVLSIGIIPLSTGNDLARSSGWRRGGEFENVVFGAVMRRLRR 127

[Close]
BLAST of MELO3C029145 vs. NCBI nr
Match: KAA0051970.1 (F-box protein [Cucumis melo var. makuwa])

HSP 1 Score: 63.9 bits (154), Expect = 1.9e-06
Identity = 40/75 (53.33%), Postives = 47/75 (62.67%), Query Frame = 0 

Query: 96  LYCVFMLLKRRGGEIENVVFGAMMRT-----------LKMKLNRL-------W-MDDNST 152
           +Y +FMLLKRRGGE ENVV GA+M+            +K+ L R        W MDDNST
Sbjct: 1   MYLLFMLLKRRGGEFENVVIGAVMQRACGVCRKWKEGVKLSLGRRNSLSFAGWKMDDNST 60

[Close]
BLAST of MELO3C029145 vs. NCBI nr
Match: TYK13529.1 (F-box protein [Cucumis melo var. makuwa])

HSP 1 Score: 55.1 bits (131), Expect = 8.9e-04
Identity = 26/32 (81.25%), Postives = 28/32 (87.50%), Query Frame = 0 

Query: 101 MLLKRRGGEIENVVFGAMMRTLKMKLNRLWMD 133
           MLLKRRGGE ENVVFGA+M  LKMK NRLW+D
Sbjct: 1   MLLKRRGGEFENVVFGAVMWRLKMKSNRLWVD 32

[Close]
BLAST of MELO3C029145 vs. ExPASy TrEMBL
Match: A0A5A7UG37 (F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold437G00550 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 5.4e-31
Identity = 79/133 (59.40%), Postives = 91/133 (68.42%), Query Frame = 0 

Query: 37  SSRIVSTRDKFIRRHSQVRRKPQVRHKSPLLKLCCVHTPFSSEVACVRRLKGCHYSTKSL 96
           SS  VST +KF+ RHSQVR KPQVRHK PLLKLC V TP SSEVA +R LKG HYSTK+L
Sbjct: 37  SSSAVSTHNKFVHRHSQVRCKPQVRHKPPLLKLCYVRTPLSSEVASIRHLKGFHYSTKTL 96

Query: 97  YCVFMLLKRRGGEIENVVFGAMMRTLKMKLNRLWMDDNSTARLIRHACSLRELDIFQGVD 156
           Y VFMLLKRR G  ENVVFGA+MR LKMK NRLW+D    A +     S  +L    G+ 
Sbjct: 97  YAVFMLLKRRSGVFENVVFGAVMRRLKMKSNRLWVD--QLANIFAMITSFTDLAQACGIC 156

Query: 157 DTNRETLSLELSK 170
              +E + L L +
Sbjct: 157 RKWKEGVKLSLGR 167

[Close]
BLAST of MELO3C029145 vs. ExPASy TrEMBL
Match: A0A5D3BSQ7 (F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1154G00110 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 1.1e-23
Identity = 78/132 (59.09%), Postives = 83/132 (62.88%), Query Frame = 0 

Query: 1   KTSQSSLSSARKPQLKTSCVRPSLKRSWVRLPSFRSSSRIVSTRDKFIRRHSQVRRKPQV 60
           +TS+SSLSSARKP LKTSCVR SLKRSWVRL SFRSSS     R+KF      VR KPQV
Sbjct: 17  RTSRSSLSSARKPSLKTSCVRLSLKRSWVRLSSFRSSS-----RNKF------VRSKPQV 76

Query: 61  RHKSPLLKLCCVHTPFSSEVACVRRLKGCHYSTKSLYCVFMLLKRRGGEIENVVFGAMMR 120
           RHK PLLKLCCV T  SSEVA VRRLK                          VF  +MR
Sbjct: 77  RHKPPLLKLCCVRTTLSSEVASVRRLK--------------------------VFDVVMR 111

Query: 121 TLKMKLNRLWMD 133
            LKMKLNRLW+D
Sbjct: 137 RLKMKLNRLWVD 111

[Close]
BLAST of MELO3C029145 vs. ExPASy TrEMBL
Match: A0A5D3DD71 (Protein TIME FOR COFFEE isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold275G00180 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.1e-10
Identity = 59/150 (39.33%), Postives = 72/150 (48.00%), Query Frame = 0 

Query: 41  VSTRDKFIRRHSQVRRKPQVRHKSPLLKLCCVHTPFSSEVACVRRLK------------- 100
           VST +KF+ RH QVRRKP+VRHK P +KL CVH P SSEVA VRRLK             
Sbjct: 8   VSTCNKFVCRHLQVRRKPKVRHKPPPVKLFCVHVPLSSEVAFVRRLKESTDVFTDKDKVA 67

Query: 101 ---------GCHYS---TKSLYCVFMLLK-----------RRGGEIENVVFGAMMRTL-- 149
                     C+Y       L    + L            RRGGE ENVVFGA+MR L  
Sbjct: 68  AHLKFEAILSCNYKQDRNPVLSIGIIPLSTGNDLARSSGWRRGGEFENVVFGAVMRRLRR 127

[Close]
BLAST of MELO3C029145 vs. ExPASy TrEMBL
Match: A0A5A7U9W6 (F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60G004500 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 9.3e-07
Identity = 40/75 (53.33%), Postives = 47/75 (62.67%), Query Frame = 0 

Query: 96  LYCVFMLLKRRGGEIENVVFGAMMRT-----------LKMKLNRL-------W-MDDNST 152
           +Y +FMLLKRRGGE ENVV GA+M+            +K+ L R        W MDDNST
Sbjct: 1   MYLLFMLLKRRGGEFENVVIGAVMQRACGVCRKWKEGVKLSLGRRNSLSFAGWKMDDNST 60

[Close]
BLAST of MELO3C029145 vs. ExPASy TrEMBL
Match: A0A5D3CTM1 (F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold299G00010 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 4.3e-04
Identity = 26/32 (81.25%), Postives = 28/32 (87.50%), Query Frame = 0 

Query: 101 MLLKRRGGEIENVVFGAMMRTLKMKLNRLWMD 133
           MLLKRRGGE ENVVFGA+M  LKMK NRLW+D
Sbjct: 1   MLLKRRGGEFENVVFGAVMWRLKMKSNRLWVD 32

The following BLAST results are available for this feature:
BLAST of MELO3C029145 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0054772.11.1e-3059.40F-box protein [Cucumis melo var. makuwa][more]
KAA0056549.12.2e-2359.09F-box protein [Cucumis melo var. makuwa] >TYK02713.1 F-box protein [Cucumis melo... [more]
TYK21534.12.2e-1039.33protein TIME FOR COFFEE isoform X1 [Cucumis melo var. makuwa][more]
KAA0051970.11.9e-0653.33F-box protein [Cucumis melo var. makuwa][more]
TYK13529.18.9e-0481.25F-box protein [Cucumis melo var. makuwa][more]
BLAST of MELO3C029145 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C029145 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7UG375.4e-3159.40F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold437G00550 ... [more]
A0A5D3BSQ71.1e-2359.09F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1154G00110... [more]
A0A5D3DD711.1e-1039.33Protein TIME FOR COFFEE isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E56... [more]
A0A5A7U9W69.3e-0753.33F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60G004500 ... [more]
A0A5D3CTM14.3e-0481.25F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold299G00010 ... [more]
BLAST of MELO3C029145 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C029145.1MELO3C029145.1mRNA