MELO3C029133 (gene) Melon (DHL92) v4

Overview
NameMELO3C029133
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionZinc finger BED domain-containing protein RICESLEEPER 3-like
Locationchr01: 23736932 .. 23739431 (+)
RNA-Seq ExpressionMELO3C029133
SyntenyMELO3C029133
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTCTTTCCACACACACTAAAATGGAATATATTTTTTTTTACTCTCAATACTGTTAAATTAAGTGGATTCAACGGATATGGAGTTAGAGTGTGATGGGAGTTGTGAAACTTCAAAAATCGTAAGGGACGAAGATACGGATGCCAAGCGTAAAACCATTGATGTTGATCTTGATTCATATGAGAGAGAAGATGTTCCAAATCCCTCGAAAATAAGGAAGAATGTCAAACAATCAATGGTTTGGGACCACTTTGAGAGGCTTAAAGGTGATCCTAATGACCCTCGTGCTACATGTACCCTTACCAAAAAGAGAGACCAAACTCAAATGACATTAGCTTTTAAACCTAAAGACAATGTTGGAGATAATTCTTCACAACTTGTATGTGAGTCATTTAGTTTAGAGGGTTGTCGGGAAGCTTTGGTTGAGATTATCATAGTTGATGAAACACCCTTTAAGTTTGTGGACAGTAAGGCGTTTAAGAAGTTTGTGGATAAATTAACATGTGGAAATCATACGAGATTTGTTGTTCCATCTCAATTTACTGTGGTTAGAGATGTGCTTAAGTTGTATGTTAATGAGAAGAATCGTTTGAGAGACATGTTTGTAAAAAATAAGTATAGAGTTTCTCTCACCACTGATTGTTGGACATCGGGACAAAATATTAATTACATGGTCCTAACTGCCTATTTCATTGATTCTGATCGGAAATTACATAAGAGAATACTTAATTTTTGTCCAATTGAGAATCATAAAGGTGATACTATTGGTAAAACCATTGAAAAGAATTTGAAGGATTGGGGCATTTAGAGGGTAATGACTTTGACGGTTGATAATGCAAGTTCGAATGACACTGCTATTGCTTATCTTTTAAAGAGATTCAATAATTCAATAAAGGATTATTGTTTGGTGGGGAATTTCTGCATGTTCGTTGTTGTGCCCATATATTGAATCTTATAGTAATTGATGCTTTTAAGGAACATAATGATTGTATTGATAGGATTCGATATGCCGTGCGATTTATAAGGTCTTCTCCTGCTCGTTTTTTGAAATTTAAAAAGTGCATTGAACTTGAAAAAATTGCTTGTAAGAGTTATGTGTGTCTTGATGTTCCTACAAGATGGAACTCCACATATATGATGCTTGAAGCTGCTGTTAAGTTTGAAAAAGCTTTTGATAGATTAGAAGATGAAGATGCCTCGTATAGACATGATATGTCACCGAATAAGGAAGATTGGACAAATGCTAGGATGTTAATACGGTTTTTAAAAGTATTTTATGATGTCACATTGAAGATTTTGGGCTCTTTGTATACTACTTCGAACTTGGTTTTCCATCAGATTACAGTAGTTCAGAATTGTATACGTTTGAATGCGGGTAGTGCAAATGCATTGTTAGTTGGAATGGCTAATAACATGAAGGCAAAATTTGAGAAATATTGGGGAAACAATGAAAGGAATAATTTGTTGTTGTATGTTGCTATTGTGTTGGATCCTCGAAAGAAATTAAGATTTGTATCTTTTTGTTTGAAAAACTTTTTTGGTCCCGAGGTTGCTGAATCCATGGGAAATATAGTGGAACAATGTTGTAGACGTCTCTTTCATGAGTATAGTACTACTCGAAGTGGGAGTAGACAAGGATGTAGTAGTACTAGTACAACTAGTACACAAACTGTTTCAGGCTTGGATGCTAATATTGATTTTGATTCAAATGAAAATGTGAGTGAAGATTTTGTCTACGACACGATTGTTGAGGAATTTGAAGATGATGTTACTACACCTTTCGAAGAGGGGTCATCGGAGATTGATATCTATTTGTTGGAAGCCAATGTTAGGACCGAAGGTGATTTTGACATACTACAGTGGTGGAAGATGAACAATGATTGATTTGAGGTTCTTGGTCATATGGCTAGAGATATTTTGGCTATTCCAGTTTCTACTGTAGCATTTGAGTCGGCTTTTAGTTCTGGAGGACGTGTTGTTGACTCATCACACTGCTCATTGGCTCCTAAAACAGTGGAGACTCTCATATGTACTCAAAATTGGCTAAATTCTTATCCAATACATCTTCAAATTCAACATGAATTGGAAGAGGCTTCAAAATTTGAAGAAGGTATTTTCAAATCTTTACATGATATCTTTTGTAGTTGTAATGTGTAACTTTAGTGAAATCTTAAATTATTTAGTAAATTCTTCATATTGATTATGTAGGATTCCGGGTGGTTATGGAAAATGAAAAGGAGCTTGATGACCTTCCAGATTTTGATAAGTTGTCAATTACCGCTGCGTTTACTAACTAATTCTGATCCAAGACTTGTAATATTTCTATTGACTAGACTATCATAGTGTTTCTGTTTCATACTTTGGTTGTATTTGTGACTCTTAATAGTAACGTGGTGAAGTGAATTGAACTTAGATGTTTCTAATTTCATTTTGGTAGTATGTTTAGATTCTTATTTTTATATAGTTTATTTTATTAATTTGTGTAATACCTATGAACTAAGCA

mRNA sequence

TTCTTTCCACACACACTAAAATGGAATATATTTTTTTTTACTCTCAATACTGTTAAATTAAGTGGATTCAACGGATATGGAGTTAGAGTGTGATGGGAGTTGTGAAACTTCAAAAATCGTAAGGGACGAAGATACGGATGCCAAGCGTAAAACCATTGATGTTGATCTTGATTCATATGAGAGAGAAGATGTTCCAAATCCCTCGAAAATAAGGAAGAATGTCAAACAATCAATGGTTTGGGACCACTTTGAGAGGCTTAAAGATTTTGTCTACGACACGATTGTTGAGGAATTTGAAGATGATGTTACTACACCTTTCGAAGAGGGGTCATCGGAGATTGATATCTATTTGTTGGAAGCCAATGTTAGGACCGAAGGTGATTTTGACATACTACAGTGGTGGAAGATGAACAATGATTGATTTGAGGTTCTTGGTCATATGGCTAGAGATATTTTGGCTATTCCAGTTTCTACTGTAGCATTTGAGTCGGCTTTTAGTTCTGGAGGACGTGTTGTTGACTCATCACACTGCTCATTGGCTCCTAAAACAGTGGAGACTCTCATATGTACTCAAAATTGGCTAAATTCTTATCCAATACATCTTCAAATTCAACATGAATTGGAAGAGGCTTCAAAATTTGAAGAAGGATTCCGGGTGGTTATGGAAAATGAAAAGGAGCTTGATGACCTTCCAGATTTTGATAAGTTGTCAATTACCGCTGCGTTTACTAACTAATTCTGATCCAAGACTTGTAATATTTCTATTGACTAGACTATCATAGTGTTTCTGTTTCATACTTTGGTTGTATTTGTGACTCTTAATAGTAACGTGGTGAAGTGAATTGAACTTAGATGTTTCTAATTTCATTTTGGTAGTATGTTTAGATTCTTATTTTTATATAGTTTATTTTATTAATTTGTGTAATACCTATGAACTAAGCA

Coding sequence (CDS)

ATGGAGTTAGAGTGTGATGGGAGTTGTGAAACTTCAAAAATCGTAAGGGACGAAGATACGGATGCCAAGCGTAAAACCATTGATGTTGATCTTGATTCATATGAGAGAGAAGATGTTCCAAATCCCTCGAAAATAAGGAAGAATGTCAAACAATCAATGGTTTGGGACCACTTTGAGAGGCTTAAAGATTTTGTCTACGACACGATTGTTGAGGAATTTGAAGATGATGTTACTACACCTTTCGAAGAGGGGTCATCGGAGATTGATATCTATTTGTTGGAAGCCAATGTTAGGACCGAAGGTGATTTTGACATACTACAGTGGTGGAAGATGAACAATGATTGA

Protein sequence

MELECDGSCETSKIVRDEDTDAKRKTIDVDLDSYEREDVPNPSKIRKNVKQSMVWDHFERLKDFVYDTIVEEFEDDVTTPFEEGSSEIDIYLLEANVRTEGDFDILQWWKMNND
Homology
[Close]
BLAST of MELO3C029133 vs. NCBI nr
Match: XP_016901224.1 (PREDICTED: uncharacterized protein LOC107991203 [Cucumis melo])

HSP 1 Score: 222.2 bits (565), Expect = 2.2e-54
Identity = 107/114 (93.86%), Postives = 110/114 (96.49%), Query Frame = 0 

Query: 1   MELECDGSCETSKIVRDEDTDAKRKTIDVDLDSYEREDVPNPSKIRKNVKQSMVWDHFER 60
           MELECDGSCETSKIVRDEDTD KRKTIDVDLDSY REDVPNP KIRKNVKQSMVWDHFER
Sbjct: 6   MELECDGSCETSKIVRDEDTDGKRKTIDVDLDSYGREDVPNPLKIRKNVKQSMVWDHFER 65

Query: 61  LKDFVYDTIVEEFEDDVTTPFEEGSSEIDIYLLEANVRTEGDFDILQWWKMNND 115
           LKDFVYDTIVEEFEDD TTPFE+GSSE+DIYLLEANVRTEGDFDILQWWKMN+D
Sbjct: 66  LKDFVYDTIVEEFEDDSTTPFEQGSSEVDIYLLEANVRTEGDFDILQWWKMNSD 119

[Close]
BLAST of MELO3C029133 vs. NCBI nr
Match: ADN33918.1 (transposase [Cucumis melo subsp. melo])

HSP 1 Score: 208.4 bits (529), Expect = 3.3e-50
Identity = 107/139 (76.98%), Postives = 110/139 (79.14%), Query Frame = 0 

Query: 1   MELECDGSCETSKIVRDEDTDAKRKTIDVDLDSYEREDVPNPSKIRKNVKQSMVWDHFER 60
           MELECDGSCETSKIVRDEDTD KRKTIDVDLDSY REDVPNP KIRKNVKQSMVWDHFER
Sbjct: 6   MELECDGSCETSKIVRDEDTDGKRKTIDVDLDSYGREDVPNPLKIRKNVKQSMVWDHFER 65

Query: 61  LK-------------------------DFVYDTIVEEFEDDVTTPFEEGSSEIDIYLLEA 115
           LK                         DFVYDTIVEEFEDD TTPFE+GSSE+DIYLLEA
Sbjct: 66  LKGDPNDPRAKCLDANIDFDSNENMREDFVYDTIVEEFEDDSTTPFEQGSSEVDIYLLEA 125

[Close]
BLAST of MELO3C029133 vs. NCBI nr
Match: KAA0041191.1 (transposase [Cucumis melo var. makuwa])

HSP 1 Score: 195.3 bits (495), Expect = 2.9e-46
Identity = 101/125 (80.80%), Postives = 108/125 (86.40%), Query Frame = 0 

Query: 1   MELECDGSCETSKIVRDEDTDAKRKTIDVDLDSYEREDVPNPSKIRKNVKQSMVWDHFER 60
           MELECDGS ETSKIVRD+DT+AKRKTIDV  DSY RE+VPNPSKIRKNVKQS+VWDHFER
Sbjct: 6   MELECDGSYETSKIVRDKDTNAKRKTIDV--DSYGREEVPNPSKIRKNVKQSIVWDHFER 65

Query: 61  LK-----------DFVYDTIVEEFEDDVTTPFEEGSSEIDIYLLEANVRTEGDFDILQWW 115
           LK           D VYDTIVEEFEDD TTPFE+GSS+IDIYLLEANVRTEGDFDILQWW
Sbjct: 66  LKGDPNDPRAKCEDLVYDTIVEEFEDDATTPFEQGSSKIDIYLLEANVRTEGDFDILQWW 125

[Close]
BLAST of MELO3C029133 vs. NCBI nr
Match: KAA0063701.1 (transposase [Cucumis melo var. makuwa])

HSP 1 Score: 193.7 bits (491), Expect = 8.4e-46
Identity = 102/123 (82.93%), Postives = 105/123 (85.37%), Query Frame = 0 

Query: 1   MELECDGSCETSKIVRDEDTDAKRKTIDVDLDSYEREDVPNPSKIRKNVKQSMVWDHFER 60
           MELECDGSCETSKIVRDEDTDAK KTIDV  DSY REDV NPSKIRKNVKQSMVW+HFER
Sbjct: 6   MELECDGSCETSKIVRDEDTDAKCKTIDV--DSYGREDVSNPSKIRKNVKQSMVWNHFER 65

Query: 61  L---------KDFVYDTIVEEFEDDVTTPFEEGSSEIDIYLLEANVRTEGDFDILQWWKM 115
           L         K FVYDTIVEEFE D TTPFE+GSSEIDIYLLEANVRTEGDFDIL WWKM
Sbjct: 66  LKCDPNDPLAKYFVYDTIVEEFEGDATTPFEQGSSEIDIYLLEANVRTEGDFDILLWWKM 125

[Close]
BLAST of MELO3C029133 vs. NCBI nr
Match: KAA0038068.1 (transposase [Cucumis melo var. makuwa] >TYK20537.1 transposase [Cucumis melo var. makuwa])

HSP 1 Score: 193.0 bits (489), Expect = 1.4e-45
Identity = 103/139 (74.10%), Postives = 106/139 (76.26%), Query Frame = 0 

Query: 1   MELECDGSCETSKIVRDEDTDAKRKTIDVDLDSYEREDVPNPSKIRKNVKQSMVWDHFER 60
           MELECDGSC+TSKIVRDEDTD KRKTIDV  DSY REDVPNPSKIRKNVKQSM+WD FER
Sbjct: 6   MELECDGSCKTSKIVRDEDTDVKRKTIDV--DSYGREDVPNPSKIRKNVKQSMIWDLFER 65

Query: 61  LK-------------------------DFVYDTIVEEFEDDVTTPFEEGSSEIDIYLLEA 115
           LK                         DFVYDTIVEEFE D TTPFE+GSSEIDIYLLEA
Sbjct: 66  LKGDPNDPCAKCLHANIDFDSNENVGEDFVYDTIVEEFEVDATTPFEQGSSEIDIYLLEA 125

[Close]
BLAST of MELO3C029133 vs. ExPASy TrEMBL
Match: A0A1S4DZ17 (uncharacterized protein LOC107991203 OS=Cucumis melo OX=3656 GN=LOC107991203 PE=4 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 1.1e-54
Identity = 107/114 (93.86%), Postives = 110/114 (96.49%), Query Frame = 0 

Query: 1   MELECDGSCETSKIVRDEDTDAKRKTIDVDLDSYEREDVPNPSKIRKNVKQSMVWDHFER 60
           MELECDGSCETSKIVRDEDTD KRKTIDVDLDSY REDVPNP KIRKNVKQSMVWDHFER
Sbjct: 6   MELECDGSCETSKIVRDEDTDGKRKTIDVDLDSYGREDVPNPLKIRKNVKQSMVWDHFER 65

Query: 61  LKDFVYDTIVEEFEDDVTTPFEEGSSEIDIYLLEANVRTEGDFDILQWWKMNND 115
           LKDFVYDTIVEEFEDD TTPFE+GSSE+DIYLLEANVRTEGDFDILQWWKMN+D
Sbjct: 66  LKDFVYDTIVEEFEDDSTTPFEQGSSEVDIYLLEANVRTEGDFDILQWWKMNSD 119

[Close]
BLAST of MELO3C029133 vs. ExPASy TrEMBL
Match: E5GBS6 (Transposase OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 1.6e-50
Identity = 107/139 (76.98%), Postives = 110/139 (79.14%), Query Frame = 0 

Query: 1   MELECDGSCETSKIVRDEDTDAKRKTIDVDLDSYEREDVPNPSKIRKNVKQSMVWDHFER 60
           MELECDGSCETSKIVRDEDTD KRKTIDVDLDSY REDVPNP KIRKNVKQSMVWDHFER
Sbjct: 6   MELECDGSCETSKIVRDEDTDGKRKTIDVDLDSYGREDVPNPLKIRKNVKQSMVWDHFER 65

Query: 61  LK-------------------------DFVYDTIVEEFEDDVTTPFEEGSSEIDIYLLEA 115
           LK                         DFVYDTIVEEFEDD TTPFE+GSSE+DIYLLEA
Sbjct: 66  LKGDPNDPRAKCLDANIDFDSNENMREDFVYDTIVEEFEDDSTTPFEQGSSEVDIYLLEA 125

[Close]
BLAST of MELO3C029133 vs. ExPASy TrEMBL
Match: A0A5A7THP7 (Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold128G001360 PE=4 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 1.4e-46
Identity = 101/125 (80.80%), Postives = 108/125 (86.40%), Query Frame = 0 

Query: 1   MELECDGSCETSKIVRDEDTDAKRKTIDVDLDSYEREDVPNPSKIRKNVKQSMVWDHFER 60
           MELECDGS ETSKIVRD+DT+AKRKTIDV  DSY RE+VPNPSKIRKNVKQS+VWDHFER
Sbjct: 6   MELECDGSYETSKIVRDKDTNAKRKTIDV--DSYGREEVPNPSKIRKNVKQSIVWDHFER 65

Query: 61  LK-----------DFVYDTIVEEFEDDVTTPFEEGSSEIDIYLLEANVRTEGDFDILQWW 115
           LK           D VYDTIVEEFEDD TTPFE+GSS+IDIYLLEANVRTEGDFDILQWW
Sbjct: 66  LKGDPNDPRAKCEDLVYDTIVEEFEDDATTPFEQGSSKIDIYLLEANVRTEGDFDILQWW 125

[Close]
BLAST of MELO3C029133 vs. ExPASy TrEMBL
Match: A0A5A7VD85 (Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold329G002210 PE=4 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 4.1e-46
Identity = 102/123 (82.93%), Postives = 105/123 (85.37%), Query Frame = 0 

Query: 1   MELECDGSCETSKIVRDEDTDAKRKTIDVDLDSYEREDVPNPSKIRKNVKQSMVWDHFER 60
           MELECDGSCETSKIVRDEDTDAK KTIDV  DSY REDV NPSKIRKNVKQSMVW+HFER
Sbjct: 6   MELECDGSCETSKIVRDEDTDAKCKTIDV--DSYGREDVSNPSKIRKNVKQSMVWNHFER 65

Query: 61  L---------KDFVYDTIVEEFEDDVTTPFEEGSSEIDIYLLEANVRTEGDFDILQWWKM 115
           L         K FVYDTIVEEFE D TTPFE+GSSEIDIYLLEANVRTEGDFDIL WWKM
Sbjct: 66  LKCDPNDPLAKYFVYDTIVEEFEGDATTPFEQGSSEIDIYLLEANVRTEGDFDILLWWKM 125

[Close]
BLAST of MELO3C029133 vs. ExPASy TrEMBL
Match: A0A5A7T5E5 (Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold237G001210 PE=4 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 7.0e-46
Identity = 103/139 (74.10%), Postives = 106/139 (76.26%), Query Frame = 0 

Query: 1   MELECDGSCETSKIVRDEDTDAKRKTIDVDLDSYEREDVPNPSKIRKNVKQSMVWDHFER 60
           MELECDGSC+TSKIVRDEDTD KRKTIDV  DSY REDVPNPSKIRKNVKQSM+WD FER
Sbjct: 6   MELECDGSCKTSKIVRDEDTDVKRKTIDV--DSYGREDVPNPSKIRKNVKQSMIWDLFER 65

Query: 61  LK-------------------------DFVYDTIVEEFEDDVTTPFEEGSSEIDIYLLEA 115
           LK                         DFVYDTIVEEFE D TTPFE+GSSEIDIYLLEA
Sbjct: 66  LKGDPNDPCAKCLHANIDFDSNENVGEDFVYDTIVEEFEVDATTPFEQGSSEIDIYLLEA 125

The following BLAST results are available for this feature:
BLAST of MELO3C029133 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_016901224.12.2e-5493.86PREDICTED: uncharacterized protein LOC107991203 [Cucumis melo][more]
ADN33918.13.3e-5076.98transposase [Cucumis melo subsp. melo][more]
KAA0041191.12.9e-4680.80transposase [Cucumis melo var. makuwa][more]
KAA0063701.18.4e-4682.93transposase [Cucumis melo var. makuwa][more]
KAA0038068.11.4e-4574.10transposase [Cucumis melo var. makuwa] >TYK20537.1 transposase [Cucumis melo var... [more]
BLAST of MELO3C029133 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C029133 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S4DZ171.1e-5493.86uncharacterized protein LOC107991203 OS=Cucumis melo OX=3656 GN=LOC107991203 PE=... [more]
E5GBS61.6e-5076.98Transposase OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1[more]
A0A5A7THP71.4e-4680.80Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold128G001360 P... [more]
A0A5A7VD854.1e-4682.93Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold329G002210 P... [more]
A0A5A7T5E57.0e-4674.10Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold237G001210 P... [more]
BLAST of MELO3C029133 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C029133.1MELO3C029133.1mRNA