MELO3C029111 (gene) Melon (DHL92) v4

Overview
NameMELO3C029111
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionSWIM-type domain-containing protein
Locationchr01: 22099704 .. 22100093 (+)
RNA-Seq ExpressionMELO3C029111
SyntenyMELO3C029111
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGAAAATCAACAGTTTATTGTGAAGTTAAATGTGGGATGTTGTAGTTGCCGAGTATGGAATGTTGAAGAAATTCCTTGTGCACATGCTCTTGATATTCTACGAATGCTTAATTTAGATACCTATTCTTATGTATCTAAGTTTTATTATAGAGAAACACTATCAGCAACGTACAATGGTTGTATTCAGCCTGTTAGATCTCATTTTGATTTGAGAGTTGTAGATTATGTCATGACAATATTACCTCCAGTCTTTAAACGACAAGCTGGAAGACCAAGAAAACAAAGAATTCCATCTATTGGCGAATTTAATAGTTCAACTAGATGTTCCAATTATAATCATAAAGGACATAATAGTAGGACTTGTAAGCAAGGTTTGAACAATTAA

mRNA sequence

ATGGATGAAAATCAACAGTTTATTGTGAAGTTAAATGTGGGATGTTGTAGTTGCCGAGTATGGAATGTTGAAGAAATTCCTTGTGCACATGCTCTTGATATTCTACGAATGCTTAATTTAGATACCTATTCTTATGTATCTAAGTTTTATTATAGAGAAACACTATCAGCAACGTACAATGGTTGTATTCAGCCTGTTAGATCTCATTTTGATTTGAGAGTTGTAGATTATGTCATGACAATATTACCTCCAGTCTTTAAACGACAAGCTGGAAGACCAAGAAAACAAAGAATTCCATCTATTGGCGAATTTAATAGTTCAACTAGATGTTCCAATTATAATCATAAAGGACATAATAGTAGGACTTGTAAGCAAGGTTTGAACAATTAA

Coding sequence (CDS)

ATGGATGAAAATCAACAGTTTATTGTGAAGTTAAATGTGGGATGTTGTAGTTGCCGAGTATGGAATGTTGAAGAAATTCCTTGTGCACATGCTCTTGATATTCTACGAATGCTTAATTTAGATACCTATTCTTATGTATCTAAGTTTTATTATAGAGAAACACTATCAGCAACGTACAATGGTTGTATTCAGCCTGTTAGATCTCATTTTGATTTGAGAGTTGTAGATTATGTCATGACAATATTACCTCCAGTCTTTAAACGACAAGCTGGAAGACCAAGAAAACAAAGAATTCCATCTATTGGCGAATTTAATAGTTCAACTAGATGTTCCAATTATAATCATAAAGGACATAATAGTAGGACTTGTAAGCAAGGTTTGAACAATTAA

Protein sequence

MDENQQFIVKLNVGCCSCRVWNVEEIPCAHALDILRMLNLDTYSYVSKFYYRETLSATYNGCIQPVRSHFDLRVVDYVMTILPPVFKRQAGRPRKQRIPSIGEFNSSTRCSNYNHKGHNSRTCKQGLNN
Homology
BLAST of MELO3C029111 vs. NCBI nr
Match: TYK07957.1 (hypothetical protein E5676_scaffold265G00780 [Cucumis melo var. makuwa])

HSP 1 Score: 225.3 bits (573), Expect = 3.0e-55
Identity = 107/123 (86.99%), Postives = 112/123 (91.06%), Query Frame = 0

Query: 4   NQQFIVKLNVGCCSCRVWNVEEIPCAHALDILRMLNLDTYSYVSKFYYRETLSATYNGCI 63
           NQQFIVKLNV CCSCRVW+VEEIPCAHAL +LRMLNLDTYSYVS+FYYRETLS TYNGCI
Sbjct: 204 NQQFIVKLNVECCSCRVWDVEEIPCAHALVVLRMLNLDTYSYVSEFYYRETLSETYNGCI 263

Query: 64  QPVRSHFDLRVVDYVMTILPPVFKRQAGRPRKQRIPSIGEFNSSTRCSNYNHKGHNSRTC 123
           QPV SHFD RVVD VM ILPPVFKRQAGRP KQRIPS+ EFNSST+CSN N KGHNSRTC
Sbjct: 264 QPVGSHFDWRVVDSVMKILPPVFKRQAGRPGKQRIPSVEEFNSSTKCSNCNRKGHNSRTC 323

Query: 124 KQG 127
           KQG
Sbjct: 324 KQG 326

BLAST of MELO3C029111 vs. NCBI nr
Match: XP_038904248.1 (uncharacterized protein LOC120090597 [Benincasa hispida])

HSP 1 Score: 159.8 bits (403), Expect = 1.5e-35
Identity = 76/125 (60.80%), Postives = 95/125 (76.00%), Query Frame = 0

Query: 1   MDENQQFIVKLNVGCCSCRVWNVEEIPCAHALDILRMLNLDTYSYVSKFYYRETLSATYN 60
           MD ++QF+VKLN+G CSCRVW+ EEI C+HAL IL +LN+D YSYVS +YY  TLS TY 
Sbjct: 224 MDGDKQFLVKLNLGSCSCRVWDFEEISCSHALVILELLNMDIYSYVSNYYYSSTLSWTYL 283

Query: 61  GCIQPVRSHFDLRVVDYVMTILPPVFKRQAGRPRKQRIPSIGEFNSST-RCSNYNHKGHN 120
           GC++P+  H + RV+D  +  LPP+FKR AG P+KQRIPS  E  SS+ RCS  + KGHN
Sbjct: 284 GCVRPIGVHSNWRVLDDDIRALPPIFKRSAGGPKKQRIPSKSEAKSSSLRCSRCHSKGHN 343

Query: 121 SRTCK 125
           SRTCK
Sbjct: 344 SRTCK 348

BLAST of MELO3C029111 vs. NCBI nr
Match: XP_038896605.1 (uncharacterized protein LOC120084863 [Benincasa hispida])

HSP 1 Score: 154.5 bits (389), Expect = 6.4e-34
Identity = 72/125 (57.60%), Postives = 93/125 (74.40%), Query Frame = 0

Query: 1   MDENQQFIVKLNVGCCSCRVWNVEEIPCAHALDILRMLNLDTYSYVSKFYYRETLSATYN 60
           MD ++QF+VKLN   CS +VW+ EEIPC+H L +LR+LN+D YSY+S +YY   LS TY 
Sbjct: 574 MDGDKQFLVKLNFESCSLQVWDFEEIPCSHVLVVLRLLNMDIYSYISNYYYSSALSWTYM 633

Query: 61  GCIQPVRSHFDLRVVDYVMTILPPVFKRQAGRPRKQRIPSIGEFNSST-RCSNYNHKGHN 120
           GC++PV  H + RV+D  +  LPP+FK  A RP+KQRIPS+GE  SS+ RCS  + KGHN
Sbjct: 634 GCVRPVGVHSNWRVLDDGIRALPPIFKHSARRPKKQRIPSVGEAKSSSLRCSRCHSKGHN 693

Query: 121 SRTCK 125
           SRTCK
Sbjct: 694 SRTCK 698

BLAST of MELO3C029111 vs. NCBI nr
Match: TYK03234.1 (uncharacterized protein E5676_scaffold298G00470 [Cucumis melo var. makuwa])

HSP 1 Score: 152.1 bits (383), Expect = 3.2e-33
Identity = 68/124 (54.84%), Postives = 91/124 (73.39%), Query Frame = 0

Query: 1   MDENQQFIVKLNVGCCSCRVWNVEEIPCAHALDILRMLNLDTYSYVSKFYYRETLSATYN 60
           +D  + F+VKLN   CSC  W++EEIPCAHAL ++R LNL+ Y++VS++YY   LSATY 
Sbjct: 81  VDGGKNFLVKLNCNSCSCLFWDLEEIPCAHALIVIRSLNLNPYAFVSQYYYATVLSATYG 140

Query: 61  GCIQPVRSHFDLRVVDYVMTILPPVFKRQAGRPRKQRIPSIGEFNSSTRCSNYNHKGHNS 120
           G ++P+ +H D  VV+    ILPPVF+R AGRPRK+RIPSIGE + S++CS     GHN 
Sbjct: 141 GLVRPIGNHTDWSVVEVNDNILPPVFRRPAGRPRKRRIPSIGEVSKSSKCSRCKRDGHNI 200

Query: 121 RTCK 125
           RTC+
Sbjct: 201 RTCR 204

BLAST of MELO3C029111 vs. NCBI nr
Match: KAA0062291.1 (hypothetical protein E6C27_scaffold154G00320 [Cucumis melo var. makuwa] >TYK26695.1 hypothetical protein E5676_scaffold313G003560 [Cucumis melo var. makuwa])

HSP 1 Score: 150.6 bits (379), Expect = 9.3e-33
Identity = 70/80 (87.50%), Postives = 74/80 (92.50%), Query Frame = 0

Query: 2   DENQQFIVKLNVGCCSCRVWNVEEIPCAHALDILRMLNLDTYSYVSKFYYRETLSATYNG 61
           D NQQFIVKLNVGCCSCRVW++EEIPCAHAL +LRMLNLDTYSYVSKFYYRETLSATYNG
Sbjct: 185 DGNQQFIVKLNVGCCSCRVWDIEEIPCAHALAVLRMLNLDTYSYVSKFYYRETLSATYNG 244

Query: 62  CIQPVRSHFDLRVVDYVMTI 82
           C QPV SHFD RVVD+VM I
Sbjct: 245 C-QPVGSHFDWRVVDFVMKI 263

BLAST of MELO3C029111 vs. ExPASy TrEMBL
Match: A0A5D3C7L7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G00780 PE=4 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 1.4e-55
Identity = 107/123 (86.99%), Postives = 112/123 (91.06%), Query Frame = 0

Query: 4   NQQFIVKLNVGCCSCRVWNVEEIPCAHALDILRMLNLDTYSYVSKFYYRETLSATYNGCI 63
           NQQFIVKLNV CCSCRVW+VEEIPCAHAL +LRMLNLDTYSYVS+FYYRETLS TYNGCI
Sbjct: 204 NQQFIVKLNVECCSCRVWDVEEIPCAHALVVLRMLNLDTYSYVSEFYYRETLSETYNGCI 263

Query: 64  QPVRSHFDLRVVDYVMTILPPVFKRQAGRPRKQRIPSIGEFNSSTRCSNYNHKGHNSRTC 123
           QPV SHFD RVVD VM ILPPVFKRQAGRP KQRIPS+ EFNSST+CSN N KGHNSRTC
Sbjct: 264 QPVGSHFDWRVVDSVMKILPPVFKRQAGRPGKQRIPSVEEFNSSTKCSNCNRKGHNSRTC 323

Query: 124 KQG 127
           KQG
Sbjct: 324 KQG 326

BLAST of MELO3C029111 vs. ExPASy TrEMBL
Match: A0A5D3BVP4 (SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold298G00470 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 1.5e-33
Identity = 68/124 (54.84%), Postives = 91/124 (73.39%), Query Frame = 0

Query: 1   MDENQQFIVKLNVGCCSCRVWNVEEIPCAHALDILRMLNLDTYSYVSKFYYRETLSATYN 60
           +D  + F+VKLN   CSC  W++EEIPCAHAL ++R LNL+ Y++VS++YY   LSATY 
Sbjct: 81  VDGGKNFLVKLNCNSCSCLFWDLEEIPCAHALIVIRSLNLNPYAFVSQYYYATVLSATYG 140

Query: 61  GCIQPVRSHFDLRVVDYVMTILPPVFKRQAGRPRKQRIPSIGEFNSSTRCSNYNHKGHNS 120
           G ++P+ +H D  VV+    ILPPVF+R AGRPRK+RIPSIGE + S++CS     GHN 
Sbjct: 141 GLVRPIGNHTDWSVVEVNDNILPPVFRRPAGRPRKRRIPSIGEVSKSSKCSRCKRDGHNI 200

Query: 121 RTCK 125
           RTC+
Sbjct: 201 RTCR 204

BLAST of MELO3C029111 vs. ExPASy TrEMBL
Match: A0A5A7V9D5 (SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G003560 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 4.5e-33
Identity = 70/80 (87.50%), Postives = 74/80 (92.50%), Query Frame = 0

Query: 2   DENQQFIVKLNVGCCSCRVWNVEEIPCAHALDILRMLNLDTYSYVSKFYYRETLSATYNG 61
           D NQQFIVKLNVGCCSCRVW++EEIPCAHAL +LRMLNLDTYSYVSKFYYRETLSATYNG
Sbjct: 185 DGNQQFIVKLNVGCCSCRVWDIEEIPCAHALAVLRMLNLDTYSYVSKFYYRETLSATYNG 244

Query: 62  CIQPVRSHFDLRVVDYVMTI 82
           C QPV SHFD RVVD+VM I
Sbjct: 245 C-QPVGSHFDWRVVDFVMKI 263

BLAST of MELO3C029111 vs. ExPASy TrEMBL
Match: A0A5A7SVB1 (ZnF_PMZ domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold845G00530 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 1.0e-32
Identity = 67/123 (54.47%), Postives = 90/123 (73.17%), Query Frame = 0

Query: 1   MDENQQFIVKLNVGCCSCRVWNVEEIPCAHALDILRMLNLDTYSYVSKFYYRETLSATYN 60
           +D  + F+VKLN   CSC  W++EEIPCA+AL ++R LNL+ Y++VS++YY   LSATY 
Sbjct: 127 VDGGKNFLVKLNCNSCSCLFWDLEEIPCAYALIVIRSLNLNPYAFVSQYYYATVLSATYG 186

Query: 61  GCIQPVRSHFDLRVVDYVMTILPPVFKRQAGRPRKQRIPSIGEFNSSTRCSNYNHKGHNS 120
           G ++P+ +H D  VV+    ILPPVF+R AGRPRK+RIPSIGE + S++CS     GHN 
Sbjct: 187 GLVRPIDNHTDWSVVEVNDNILPPVFRRSAGRPRKRRIPSIGEVSKSSKCSRCKRAGHNI 246

Query: 121 RTC 124
           RTC
Sbjct: 247 RTC 249

BLAST of MELO3C029111 vs. ExPASy TrEMBL
Match: A0A5D3BD68 (SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1278G00090 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 1.7e-32
Identity = 67/124 (54.03%), Postives = 89/124 (71.77%), Query Frame = 0

Query: 1   MDENQQFIVKLNVGCCSCRVWNVEEIPCAHALDILRMLNLDTYSYVSKFYYRETLSATYN 60
           +D  + F+VKLN   CSC  W++EEIPCAHAL ++R LNL+ Y++VS++YY   LSATY 
Sbjct: 480 VDGGKNFLVKLNCNSCSCLFWDLEEIPCAHALIVIRSLNLNPYAFVSQYYYATVLSATYG 539

Query: 61  GCIQPVRSHFDLRVVDYVMTILPPVFKRQAGRPRKQRIPSIGEFNSSTRCSNYNHKGHNS 120
           G ++P+ +H D  VV     ILPPVF+R AGRPRK+RIPSIGE + S++CS      HN 
Sbjct: 540 GLVRPIGNHTDWSVVGVNDNILPPVFRRPAGRPRKRRIPSIGEVSKSSKCSRCKRASHNI 599

Query: 121 RTCK 125
           RTC+
Sbjct: 600 RTCR 603

BLAST of MELO3C029111 vs. TAIR 10
Match: AT1G64260.1 (MuDR family transposase )

HSP 1 Score: 52.4 bits (124), Expect = 3.2e-07
Identity = 23/64 (35.94%), Postives = 34/64 (53.12%), Query Frame = 0

Query: 3   ENQQFIVKLNVGCCSCRVWNVEEIPCAHALDILRMLNLDTYSYVSKFYYRETLSATYNGC 62
           E +++IV+LNV  C+CR +   + PC HAL +   L ++   YV + Y  E    TY   
Sbjct: 630 EKEEWIVQLNVSTCTCRKFQSYKFPCLHALAVFEKLKINPLQYVDECYTVEQYCKTYAAT 689

Query: 63  IQPV 67
             PV
Sbjct: 690 FSPV 693

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TYK07957.13.0e-5586.99hypothetical protein E5676_scaffold265G00780 [Cucumis melo var. makuwa][more]
XP_038904248.11.5e-3560.80uncharacterized protein LOC120090597 [Benincasa hispida][more]
XP_038896605.16.4e-3457.60uncharacterized protein LOC120084863 [Benincasa hispida][more]
TYK03234.13.2e-3354.84uncharacterized protein E5676_scaffold298G00470 [Cucumis melo var. makuwa][more]
KAA0062291.19.3e-3387.50hypothetical protein E6C27_scaffold154G00320 [Cucumis melo var. makuwa] >TYK2669... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3C7L71.4e-5586.99Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3BVP41.5e-3354.84SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5... [more]
A0A5A7V9D54.5e-3387.50SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5... [more]
A0A5A7SVB11.0e-3254.47ZnF_PMZ domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A5D3BD681.7e-3254.03SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5... [more]
Match NameE-valueIdentityDescription
AT1G64260.13.2e-0735.94MuDR family transposase [more]
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006564Zinc finger, PMZ-typeSMARTSM0057526again6coord: 14..41
e-value: 5.0E-5
score: 32.7
IPR007527Zinc finger, SWIM-typePFAMPF04434SWIMcoord: 9..32
e-value: 1.2E-4
score: 21.6
IPR007527Zinc finger, SWIM-typePROSITEPS50966ZF_SWIMcoord: 7..39
score: 9.890841

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C029111.1MELO3C029111.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0008270 zinc ion binding