MELO3C029092 (gene) Melon (DHL92) v4

Overview


Name	MELO3C029092
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	TPRXL isoform X1
Location	chr01: 20583449 .. 20583835 (-)
RNA-Seq Expression	MELO3C029092
Synteny	MELO3C029092

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTCGCAGGGAGCACTGGTTTGAAAAACCCATTGCCAACATGGATTCAAACTCTGTCAAGTTCTCCAGACGAGGTATTAATGTATATTTTTAAGAATTACACAAAAGTTGTACATGTTTATAACTTTTTGTATGGCTAATTATAGCATAGACCAGAAGATACAATGGTGGAGGGGTCGGGAAGCAAGCGAGAAAGTTCAATAACTTCGAAAAAGAGGGGGAGGAATGAACCTCCAAAAGAAGATGCTATTGTAAAGAAGAAACAGACGATAAAAAGCTTGGTAAACTGCTTTATTAAGATTTATTTTCTAATGAGTACAATGAAGGTTTTGATGTTGTGGTACATGGAGGTTTAAAAAAGGAAAGTTTACAGAAGGAAACGTGA

mRNA sequence

ATGAGTCGCAGGGAGCACTGGTTTGAAAAACCCATTGCCAACATGGATTCAAACTCTGTCAAGTTCTCCAGACGAGGTATTAATCATAGACCAGAAGATACAATGGTGGAGGGGTCGGGAAGCAAGCGAGAAAGTTCAATAACTTCGAAAAAGAGGGGGAGGAATGAACCTCCAAAAGAAGATGCTATTGTAAAGAAGAAACAGACGATAAAAAGCTTGTACAATGAAGGTTTTGATGTTGTGGTACATGGAGGTTTAAAAAAGGAAAGTTTACAGAAGGAAACGTGA

Coding sequence (CDS)

ATGAGTCGCAGGGAGCACTGGTTTGAAAAACCCATTGCCAACATGGATTCAAACTCTGTCAAGTTCTCCAGACGAGGTATTAATCATAGACCAGAAGATACAATGGTGGAGGGGTCGGGAAGCAAGCGAGAAAGTTCAATAACTTCGAAAAAGAGGGGGAGGAATGAACCTCCAAAAGAAGATGCTATTGTAAAGAAGAAACAGACGATAAAAAGCTTGTACAATGAAGGTTTTGATGTTGTGGTACATGGAGGTTTAAAAAAGGAAAGTTTACAGAAGGAAACGTGA

Protein sequence

MSRREHWFEKPIANMDSNSVKFSRRGINHRPEDTMVEGSGSKRESSITSKKRGRNEPPKEDAIVKKKQTIKSLYNEGFDVVVHGGLKKESLQKET

Homology

[Close]

BLAST of MELO3C029092 vs. NCBI nr
Match: KAA0067216.1 (TPRXL isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 92.8 bits (229), Expect = 1.7e-15
Identity = 53/89 (59.55%), Postives = 65/89 (73.03%), Query Frame = 0


Query: 5  EHWFEKPIANMDSNSVKFSRRGINHRPEDTMVEGSGSKRESSITSKKRGRNEPPKEDAIV 64
          +HWFE+ IAN +SNSV+F RRG N RPED MVEG GSK++S ITSKKRGR E PKED  V
Sbjct: 2  DHWFEETIANGNSNSVEFFRRGTN-RPEDIMVEGLGSKQDSPITSKKRGRTEAPKEDVTV 61

Query: 65 KKKQTIKSLYNEGFDVVVHGGLKKESLQK 94
          +KKQ IKSL ++    V    LKK + ++
Sbjct: 62 QKKQRIKSLVSK--SRVYRRNLKKRNKKR 87

[Close]

BLAST of MELO3C029092 vs. NCBI nr
Match: KAA0048427.1 (hypothetical protein E6C27_scaffold61G00010 [Cucumis melo var. makuwa] >TYK28223.1 hypothetical protein E5676_scaffold600G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 57.4 bits (137), Expect = 7.9e-05
Identity = 35/65 (53.85%), Postives = 43/65 (66.15%), Query Frame = 0


Query: 30  RPEDTMVEGSGSKRESSITSKKRGRNEPPKEDAIVKKKQTIKSLYNEGFDVVVHGGLKKE 89
           R ++  VEG G+KR+S +TSKKRGR EPPKED  V+KKQ IKSL +      V+    KE
Sbjct: 65  RIKNIKVEGLGNKRDSPVTSKKRGRTEPPKEDVTVQKKQKIKSLVSRR---EVYRREAKE 124

Query: 90  SLQKE 95
             QKE
Sbjct: 125 KKQKE 126

[Close]

BLAST of MELO3C029092 vs. NCBI nr
Match: KAA0064135.1 (protein Ycf2-like [Cucumis melo var. makuwa])

HSP 1 Score: 53.9 bits (128), Expect = 8.7e-04
Identity = 32/64 (50.00%), Postives = 41/64 (64.06%), Query Frame = 0


Query: 30  RPEDTMVEGSGSKRESSITSKKRGRNEPPKEDAIVKKKQTIKSLYNEGFDVVVHGGLKKE 89
           R ED M EGSG KRES  TSKKR R E  KE+A V+KKQ IKSL        + G +K++
Sbjct: 42  RTEDIMAEGSGGKRESPGTSKKRVRTETKKEEATVQKKQRIKSLVKSRGREFIGGKVKEK 101

Query: 90  SLQK 94
           + ++
Sbjct: 102 NKKR 105

[Close]

BLAST of MELO3C029092 vs. ExPASy TrEMBL
Match: A0A5A7VL86 (TPRXL isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold418G00210 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 8.2e-16
Identity = 53/89 (59.55%), Postives = 65/89 (73.03%), Query Frame = 0


Query: 5  EHWFEKPIANMDSNSVKFSRRGINHRPEDTMVEGSGSKRESSITSKKRGRNEPPKEDAIV 64
          +HWFE+ IAN +SNSV+F RRG N RPED MVEG GSK++S ITSKKRGR E PKED  V
Sbjct: 2  DHWFEETIANGNSNSVEFFRRGTN-RPEDIMVEGLGSKQDSPITSKKRGRTEAPKEDVTV 61

Query: 65 KKKQTIKSLYNEGFDVVVHGGLKKESLQK 94
          +KKQ IKSL ++    V    LKK + ++
Sbjct: 62 QKKQRIKSLVSK--SRVYRRNLKKRNKKR 87

[Close]

BLAST of MELO3C029092 vs. ExPASy TrEMBL
Match: A0A5D3DX05 (DUF1985 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold600G00010 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 3.8e-05
Identity = 35/65 (53.85%), Postives = 43/65 (66.15%), Query Frame = 0


Query: 30  RPEDTMVEGSGSKRESSITSKKRGRNEPPKEDAIVKKKQTIKSLYNEGFDVVVHGGLKKE 89
           R ++  VEG G+KR+S +TSKKRGR EPPKED  V+KKQ IKSL +      V+    KE
Sbjct: 65  RIKNIKVEGLGNKRDSPVTSKKRGRTEPPKEDVTVQKKQKIKSLVSRR---EVYRREAKE 124

Query: 90  SLQKE 95
             QKE
Sbjct: 125 KKQKE 126

[Close]

BLAST of MELO3C029092 vs. ExPASy TrEMBL
Match: A0A5A7VE08 (Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold548G00540 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 4.2e-04
Identity = 32/64 (50.00%), Postives = 41/64 (64.06%), Query Frame = 0


Query: 30  RPEDTMVEGSGSKRESSITSKKRGRNEPPKEDAIVKKKQTIKSLYNEGFDVVVHGGLKKE 89
           R ED M EGSG KRES  TSKKR R E  KE+A V+KKQ IKSL        + G +K++
Sbjct: 42  RTEDIMAEGSGGKRESPGTSKKRVRTETKKEEATVQKKQRIKSLVKSRGREFIGGKVKEK 101

Query: 90  SLQK 94
           + ++
Sbjct: 102 NKKR 105

The following BLAST results are available for this feature:

BLAST of MELO3C029092 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0067216.1	1.7e-15	59.55	TPRXL isoform X1 [Cucumis melo var. makuwa]	[more]
KAA0048427.1	7.9e-05	53.85	hypothetical protein E6C27_scaffold61G00010 [Cucumis melo var. makuwa] >TYK28223...	[more]
KAA0064135.1	8.7e-04	50.00	protein Ycf2-like [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C029092 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C029092 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VL86	8.2e-16	59.55	TPRXL isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold418G002...	[more]
A0A5D3DX05	3.8e-05	53.85	DUF1985 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7VE08	4.2e-04	50.00	Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold548G00...	[more]

BLAST of MELO3C029092 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 21..62
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 23..62

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C029092.1	MELO3C029092.1	mRNA