MELO3C029085 (gene) Melon (DHL92) v4

Overview
NameMELO3C029085
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionDefensin-like protein 3
Locationchr01: 19799825 .. 19800352 (-)
RNA-Seq ExpressionMELO3C029085
SyntenyMELO3C029085
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AACATTAAAATGAAAGGAAATGAGGTAGTCACAATATATAAAAGGGGTATTGACTCCTAAGCAGGGCATTGGAATTAAAGTACAAGAAACTGAAAGATTAAGAAGAAAAAGACATGGCAGGACGATGGAAAAAACTCACATTTGTGGCATTTGTCTTTCTATCCATTGCTTCTGGTACTCAATCTGATGCCATTATTTCATGTCATTTCCAAAATAAAAATAGAGATTAACAGAATCACGTAGTGTTGTTGTTACTTACAGGATGGATGATGGAGGAGACGGAAGGAAAGATTTGCTTCAAGCAGAGCCCGTCGTTCAAGGGAAAGTGTACTTCAAATGATGAATGTGTTAAAGCTTGCGATATCGACATGTGGTATAATGGAGTTTGCTCGAACGGTTTATGCATTTGTACCGTCATTTGTTGACTTTGTCATGGTCGTGTTATACAATTTTAATCTGGTATAAAATTGACTGAAGTTGTTATCTTCGAAATGAATAAATAAGTTGTTGATCGCCGCTGTTAAACTA

mRNA sequence

AACATTAAAATGAAAGGAAATGAGGTAGTCACAATATATAAAAGGGGTATTGACTCCTAAGCAGGGCATTGGAATTAAAGTACAAGAAACTGAAAGATTAAGAAGAAAAAGACATGGCAGGACGATGGAAAAAACTCACATTTGTGGCATTTGTCTTTCTATCCATTGCTTCTGGATGGATGATGGAGGAGACGGAAGGAAAGATTTGCTTCAAGCAGAGCCCGTCGTTCAAGGGAAAGTGTACTTCAAATGATGAATGTGTTAAAGCTTGCGATATCGACATGTGGTATAATGGAGTTTGCTCGAACGGTTTATGCATTTGTACCGTCATTTGTTGACTTTGTCATGGTCGTGTTATACAATTTTAATCTGGTATAAAATTGACTGAAGTTGTTATCTTCGAAATGAATAAATAAGTTGTTGATCGCCGCTGTTAAACTA

Coding sequence (CDS)

ATGGCAGGACGATGGAAAAAACTCACATTTGTGGCATTTGTCTTTCTATCCATTGCTTCTGGATGGATGATGGAGGAGACGGAAGGAAAGATTTGCTTCAAGCAGAGCCCGTCGTTCAAGGGAAAGTGTACTTCAAATGATGAATGTGTTAAAGCTTGCGATATCGACATGTGGTATAATGGAGTTTGCTCGAACGGTTTATGCATTTGTACCGTCATTTGTTGA

Protein sequence

MAGRWKKLTFVAFVFLSIASGWMMEETEGKICFKQSPSFKGKCTSNDECVKACDIDMWYNGVCSNGLCICTVIC
Homology
BLAST of MELO3C029085 vs. NCBI nr
Match: KAA0062794.1 (defensin-like protein 3 [Cucumis melo var. makuwa] >TYJ96759.1 defensin-like protein 3 [Cucumis melo var. makuwa])

HSP 1 Score: 162.9 bits (411), Expect = 1.0e-36
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0

Query: 1  MAGRWKKLTFVAFVFLSIASGWMMEETEGKICFKQSPSFKGKCTSNDECVKACDIDMWYN 60
          MAGRWKKLTFVAFVFLSIASGWMMEETEGKICFKQSPSFKGKCTSNDECVKACDIDMWYN
Sbjct: 1  MAGRWKKLTFVAFVFLSIASGWMMEETEGKICFKQSPSFKGKCTSNDECVKACDIDMWYN 60

Query: 61 GVCSNGLCICTVIC 75
          GVCSNGLCICTVIC
Sbjct: 61 GVCSNGLCICTVIC 74

BLAST of MELO3C029085 vs. NCBI nr
Match: KGN44293.1 (hypothetical protein Csa_016568 [Cucumis sativus])

HSP 1 Score: 137.5 bits (345), Expect = 4.7e-29
Identity = 64/75 (85.33%), Postives = 67/75 (89.33%), Query Frame = 0

Query: 1  MAGRWKKLTFVAFVF-LSIASGWMMEETEGKICFKQSPSFKGKCTSNDECVKACDIDMWY 60
          MAG WKKLTFVAF+F L+IASGWMM ET GKICFKQS SFKGKC SNDECVKACD DMWY
Sbjct: 1  MAGGWKKLTFVAFIFLLAIASGWMMVETAGKICFKQSRSFKGKCISNDECVKACDTDMWY 60

Query: 61 NGVCSNGLCICTVIC 75
          +G CSNGLCICTVIC
Sbjct: 61 DGFCSNGLCICTVIC 75

BLAST of MELO3C029085 vs. NCBI nr
Match: XP_038887289.1 (defensin-like protein 2 [Benincasa hispida])

HSP 1 Score: 125.6 bits (314), Expect = 1.8e-25
Identity = 56/75 (74.67%), Postives = 64/75 (85.33%), Query Frame = 0

Query: 1  MAGR-WKKLTFVAFVFLSIASGWMMEETEGKICFKQSPSFKGKCTSNDECVKACDIDMWY 60
          MAG  W+KLT V F+FL++ASGWM+ ETEGK CFKQSPSF+G+CTSN+ECV ACD DMWY
Sbjct: 1  MAGEGWRKLTVVLFIFLALASGWMVVETEGKTCFKQSPSFRGQCTSNNECVGACDNDMWY 60

Query: 61 NGVCSNGLCICTVIC 75
          NG CSNGLCIC V C
Sbjct: 61 NGYCSNGLCICAVHC 75

BLAST of MELO3C029085 vs. NCBI nr
Match: AHA50469.1 (defensin-like protein 3 [Citrullus lanatus])

HSP 1 Score: 94.0 bits (232), Expect = 5.9e-16
Identity = 42/76 (55.26%), Postives = 57/76 (75.00%), Query Frame = 0

Query: 1  MAG--RWKKLTFVAFVFLSIASGWMMEETEGKICFKQSPSFKGKCTSNDECVKACDIDMW 60
          MAG   W+KLT V F+FLS+ASGWM+ ETEG+ C++ SPSFKG+C+S+++C+  CD    
Sbjct: 1  MAGSEEWRKLTIVLFIFLSLASGWMVAETEGRACYRPSPSFKGRCSSDEDCIGVCD---- 60

Query: 61 YNGVCSNGLCICTVIC 75
            G C++G CICTV C
Sbjct: 61 --GFCNHGSCICTVPC 70

BLAST of MELO3C029085 vs. NCBI nr
Match: XP_031744629.1 (defensin-1-like [Cucumis sativus])

HSP 1 Score: 87.4 bits (215), Expect = 5.5e-14
Identity = 37/70 (52.86%), Postives = 50/70 (71.43%), Query Frame = 0

Query: 5  WKKLTFVAFVFLSIASGWMMEETEGKICFKQSPSFKGKCTSNDECVKACDIDMWYNGVCS 64
          W+KLT V F+ LS+ASGWM+ ETEG++C++ SP  KG C+SND+C+  CD      G CS
Sbjct: 6  WRKLTVVLFILLSLASGWMVAETEGRVCYRPSPRLKGVCSSNDDCIAVCD------GFCS 65

Query: 65 NGLCICTVIC 75
          +G C+C V C
Sbjct: 66 HGKCMCEVPC 69

BLAST of MELO3C029085 vs. ExPASy TrEMBL
Match: A0A5D3BCI9 (Defensin-like protein 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold986G00530 PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 5.0e-37
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0

Query: 1  MAGRWKKLTFVAFVFLSIASGWMMEETEGKICFKQSPSFKGKCTSNDECVKACDIDMWYN 60
          MAGRWKKLTFVAFVFLSIASGWMMEETEGKICFKQSPSFKGKCTSNDECVKACDIDMWYN
Sbjct: 1  MAGRWKKLTFVAFVFLSIASGWMMEETEGKICFKQSPSFKGKCTSNDECVKACDIDMWYN 60

Query: 61 GVCSNGLCICTVIC 75
          GVCSNGLCICTVIC
Sbjct: 61 GVCSNGLCICTVIC 74

BLAST of MELO3C029085 vs. ExPASy TrEMBL
Match: A0A0A0K447 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G239060 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 2.3e-29
Identity = 64/75 (85.33%), Postives = 67/75 (89.33%), Query Frame = 0

Query: 1  MAGRWKKLTFVAFVF-LSIASGWMMEETEGKICFKQSPSFKGKCTSNDECVKACDIDMWY 60
          MAG WKKLTFVAF+F L+IASGWMM ET GKICFKQS SFKGKC SNDECVKACD DMWY
Sbjct: 1  MAGGWKKLTFVAFIFLLAIASGWMMVETAGKICFKQSRSFKGKCISNDECVKACDTDMWY 60

Query: 61 NGVCSNGLCICTVIC 75
          +G CSNGLCICTVIC
Sbjct: 61 DGFCSNGLCICTVIC 75

BLAST of MELO3C029085 vs. ExPASy TrEMBL
Match: W5RQN1 (Defensin-like protein 3 OS=Citrullus lanatus OX=3654 GN=PDF2.3 PE=2 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 2.9e-16
Identity = 42/76 (55.26%), Postives = 57/76 (75.00%), Query Frame = 0

Query: 1  MAG--RWKKLTFVAFVFLSIASGWMMEETEGKICFKQSPSFKGKCTSNDECVKACDIDMW 60
          MAG   W+KLT V F+FLS+ASGWM+ ETEG+ C++ SPSFKG+C+S+++C+  CD    
Sbjct: 1  MAGSEEWRKLTIVLFIFLSLASGWMVAETEGRACYRPSPSFKGRCSSDEDCIGVCD---- 60

Query: 61 YNGVCSNGLCICTVIC 75
            G C++G CICTV C
Sbjct: 61 --GFCNHGSCICTVPC 70

BLAST of MELO3C029085 vs. ExPASy TrEMBL
Match: A0A5D3BEY4 (Defensin-like protein 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold986G00520 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 4.7e-11
Identity = 33/69 (47.83%), Postives = 47/69 (68.12%), Query Frame = 0

Query: 6  KKLTFVAFVFLSIASGWMMEETEGKICFKQSPSFKGKCTSNDECVKACDIDMWYNGVCSN 65
          +KLT V  + LS+ASGWM+ ETEG++CF+  P+ KG C+S+++C+  CD      G CS 
Sbjct: 7  RKLTVVLVILLSVASGWMVAETEGRVCFRPRPTLKGVCSSDEDCIAVCD------GFCSL 66

Query: 66 GLCICTVIC 75
          G C+C V C
Sbjct: 67 GKCMCAVPC 69

BLAST of MELO3C029085 vs. ExPASy TrEMBL
Match: A0A5A7V3H5 (Defensin-like protein 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold986G00550 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 2.0e-09
Identity = 33/70 (47.14%), Postives = 44/70 (62.86%), Query Frame = 0

Query: 6  KKLTFVAFVFLSIASGWMMEETEGKICFKQSPSFKGKCTSNDECVKACDI-DMWYNGVCS 65
          +KLT V  +FL  ASGWM+ +TEG  C+K S +F+G C S +EC + C   + W +G CS
Sbjct: 7  RKLTVVVLIFLVFASGWMVVQTEGLTCYKPSTAFQGTCNSAEECGRVCFYQEGWDDGFCS 66

Query: 66 NGLCICTVIC 75
             CICT  C
Sbjct: 67 GDKCICTEKC 76

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0062794.11.0e-36100.00defensin-like protein 3 [Cucumis melo var. makuwa] >TYJ96759.1 defensin-like pro... [more]
KGN44293.14.7e-2985.33hypothetical protein Csa_016568 [Cucumis sativus][more]
XP_038887289.11.8e-2574.67defensin-like protein 2 [Benincasa hispida][more]
AHA50469.15.9e-1655.26defensin-like protein 3 [Citrullus lanatus][more]
XP_031744629.15.5e-1452.86defensin-1-like [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3BCI95.0e-37100.00Defensin-like protein 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0K4472.3e-2985.33Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G239060 PE=4 SV=1[more]
W5RQN12.9e-1655.26Defensin-like protein 3 OS=Citrullus lanatus OX=3654 GN=PDF2.3 PE=2 SV=1[more]
A0A5D3BEY44.7e-1147.83Defensin-like protein 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7V3H52.0e-0947.14Defensin-like protein 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF00304Gamma-thionincoord: 30..74
e-value: 5.3E-6
score: 26.6
IPR036574Knottin, scorpion toxin-like superfamilyGENE3D3.30.30.10coord: 29..74
e-value: 6.0E-8
score: 34.8
IPR036574Knottin, scorpion toxin-like superfamilySUPERFAMILY57095Scorpion toxin-likecoord: 30..74
IPR008176Defensin, plantPROSITEPS00940GAMMA_THIONINcoord: 30..53

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C029085.1MELO3C029085.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006952 defense response