MELO3C029073 (gene) Melon (DHL92) v4

Overview


Name	MELO3C029073
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Retrotransposon protein
Location	chr01: 18587388 .. 18588176 (-)
RNA-Seq Expression	MELO3C029073
Synteny	MELO3C029073

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACAGGCGAACATTCGCAATTCTATGTCATTTACTTCGGACTGTATCTAGTCTTTCATCTATCGAGATTGTCGATGTCGAGGAAATGGTAGCAATGTTCTTGCACGTCCTTGCCCATGACGTGAAGAACCGCGTAATTCAAAGGGAATTTGTACGGTCCGGTGAGACAGTATCGCTACATTTTAACCTTGTACTATTAGCTGTCGTCCGACTATACGAGGAGTTAATAAAGCGACCTGTTCCGGTGACAAACAACTGTAATGATCAACGTTGGAAGTGTTTCGAGGTGGGCATGGTACAAGTTTAATGTATTTGACCTTAATGTACATGGCACTTATATCAGCGTGTTTATTACAACTTGCAGAATTGCCTTGGCGCGTTAGACGGGACGTACATAAAGGTGAACGTCCCCGCAACAGATCGGCCTACATTCAGAACGCGTAAGGGGAAAATTGCCACAAACGTACTAGGCGTGTGCGACACGAAAGGGGATTTCGTTTATGTCCTCGCCGGTTGGGAAGGATCGGCGGCAGACTCGCGGATTCTACGTGATGCCCTGTCACGAGAAAATGGACTACAAGTGCCAAAGGGTATATCTTATTTATAATAAAACAACGTCGCTTTCTACTTAACTATTCGAAGCGCTTAAACGAGTATTTTAATAACAGGATATTATTATCTGTACGATGGGGGTTATCAAAACGCCGAGGGTTTCTGGTCACGTATAGAGGCCAGCGATACCATTTGCAAGAGTGACTGGTGGAGGAAATGCGCCAACAAATGCTAA

mRNA sequence

ATGGACAGGCGAACATTCGCAATTCTATGTCATTTACTTCGGACTGTATCTAGTCTTTCATCTATCGAGATTGTCGATGTCGAGGAAATGGTAGCAATGTTCTTGCACGTCCTTGCCCATGACGTGAAGAACCGCGTAATTCAAAGGGAATTTGTACGGTCCGGTGAGACAGTATCGCTACATTTTAACCTTGTACTATTAGCTGTCGTCCGACTATACGAGGAGTTAATAAAGCGACCTGTTCCGGTGACAAACAACTGTAATGATCAACGTTGGAAGTGTTTCGAGGTGGGCATGAATTGCCTTGGCGCGTTAGACGGGACGTACATAAAGGTGAACGTCCCCGCAACAGATCGGCCTACATTCAGAACGCGTAAGGGGAAAATTGCCACAAACGTACTAGGCGTGTGCGACACGAAAGGGGATTTCGTTTATGTCCTCGCCGGTTGGGAAGGATCGGCGGCAGACTCGCGGATTCTACGTGATGCCCTGTCACGAGAAAATGGACTACAAGTGCCAAAGGGATATTATTATCTGTACGATGGGGGTTATCAAAACGCCGAGGGTTTCTGGTCACGTATAGAGGCCAGCGATACCATTTGCAAGAGTGACTGGTGGAGGAAATGCGCCAACAAATGCTAA

Coding sequence (CDS)

ATGGACAGGCGAACATTCGCAATTCTATGTCATTTACTTCGGACTGTATCTAGTCTTTCATCTATCGAGATTGTCGATGTCGAGGAAATGGTAGCAATGTTCTTGCACGTCCTTGCCCATGACGTGAAGAACCGCGTAATTCAAAGGGAATTTGTACGGTCCGGTGAGACAGTATCGCTACATTTTAACCTTGTACTATTAGCTGTCGTCCGACTATACGAGGAGTTAATAAAGCGACCTGTTCCGGTGACAAACAACTGTAATGATCAACGTTGGAAGTGTTTCGAGGTGGGCATGAATTGCCTTGGCGCGTTAGACGGGACGTACATAAAGGTGAACGTCCCCGCAACAGATCGGCCTACATTCAGAACGCGTAAGGGGAAAATTGCCACAAACGTACTAGGCGTGTGCGACACGAAAGGGGATTTCGTTTATGTCCTCGCCGGTTGGGAAGGATCGGCGGCAGACTCGCGGATTCTACGTGATGCCCTGTCACGAGAAAATGGACTACAAGTGCCAAAGGGATATTATTATCTGTACGATGGGGGTTATCAAAACGCCGAGGGTTTCTGGTCACGTATAGAGGCCAGCGATACCATTTGCAAGAGTGACTGGTGGAGGAAATGCGCCAACAAATGCTAA

Protein sequence

MDRRTFAILCHLLRTVSSLSSIEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSLHFNLVLLAVVRLYEELIKRPVPVTNNCNDQRWKCFEVGMNCLGALDGTYIKVNVPATDRPTFRTRKGKIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRENGLQVPKGYYYLYDGGYQNAEGFWSRIEASDTICKSDWWRKCANKC

Homology

[Close]

BLAST of MELO3C029073 vs. NCBI nr
Match: TYK22656.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 427.2 bits (1097), Expect = 8.5e-116
Identity = 207/213 (97.18%), Postives = 208/213 (97.65%), Query Frame = 0


Query: 1   MDRRTFAILCHLLRTVSSLSSIEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSL 60
           MDRRTFAILCHLLRTVSSLSSIEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSL
Sbjct: 1   MDRRTFAILCHLLRTVSSLSSIEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSL 60

Query: 61  HFNLVLLAVVRLYEELIKRPVPVTNNCNDQRWKCFEVGMNCLGALDGTYIKVNVPATDRP 120
           HFNLVLLAVVRLYEELIKRPVPVTNNCNDQRWKCFE   NCLGALDGTYIKVNVPATDRP
Sbjct: 61  HFNLVLLAVVRLYEELIKRPVPVTNNCNDQRWKCFE---NCLGALDGTYIKVNVPATDRP 120

Query: 121 TFRTRKGKIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRENGLQVPKGYYYLY 180
           TFRTRKGKIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRENGLQVPKGYYYLY
Sbjct: 121 TFRTRKGKIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRENGLQVPKGYYYLY 180

Query: 181 DGGYQNAEGFWSRIEASDTICKSDWWRKCANKC 214
           DGGY+NAEGFWSRIEASD ICKSDWWRKC NKC
Sbjct: 181 DGGYENAEGFWSRIEASDIICKSDWWRKCTNKC 210

[Close]

BLAST of MELO3C029073 vs. NCBI nr
Match: KAA0032767.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 352.1 bits (902), Expect = 3.5e-93
Identity = 173/190 (91.05%), Postives = 179/190 (94.21%), Query Frame = 0


Query: 1   MDRRTFAILCHLLRTVSSLSSIEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSL 60
           MDRRTFAILCHLLR V+ LSS EIVDVEEMVAMFLHVLAHD+KNRVIQREFVRSGETVS 
Sbjct: 45  MDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDMKNRVIQREFVRSGETVSR 104

Query: 61  HFNLVLLAVVRLYEELIKRPVPVTNNCNDQRWKCFEVGMNCLGALDGTYIKVNVPATDRP 120
           HFN+VLLAV+RLYEELIKRPVPVT+NCNDQRWKCFE   NCLGALDGTYIKVNVPA DRP
Sbjct: 105 HFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFE---NCLGALDGTYIKVNVPAGDRP 164

Query: 121 TFRTRKGKIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRENGLQVPKGYYYLY 180
           TFRTRKGKIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDA+SRENGLQVPKGYYYL 
Sbjct: 165 TFRTRKGKIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDAISRENGLQVPKGYYYLC 224

Query: 181 DGGYQNAEGF 191
           D GY NAEGF
Sbjct: 225 DAGYPNAEGF 231

[Close]

BLAST of MELO3C029073 vs. NCBI nr
Match: KAA0056561.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 351.7 bits (901), Expect = 4.5e-93
Identity = 173/190 (91.05%), Postives = 179/190 (94.21%), Query Frame = 0


Query: 1   MDRRTFAILCHLLRTVSSLSSIEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSL 60
           MDRRTFAILCHLLR V+ LSS EIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVS 
Sbjct: 40  MDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSR 99

Query: 61  HFNLVLLAVVRLYEELIKRPVPVTNNCNDQRWKCFEVGMNCLGALDGTYIKVNVPATDRP 120
           HFN+VLLAV+RLYEELIKRPVPVT+NCNDQRWKCFE   NCLGALDGTYIKVNVPA DRP
Sbjct: 100 HFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFE---NCLGALDGTYIKVNVPAGDRP 159

Query: 121 TFRTRKGKIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRENGLQVPKGYYYLY 180
           TFRTRKG+IATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDA+SRENGLQVPKGYYYL 
Sbjct: 160 TFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDAISRENGLQVPKGYYYLC 219

Query: 181 DGGYQNAEGF 191
           D GY NAEGF
Sbjct: 220 DAGYPNAEGF 226

[Close]

BLAST of MELO3C029073 vs. NCBI nr
Match: KAA0064809.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 351.7 bits (901), Expect = 4.5e-93
Identity = 173/190 (91.05%), Postives = 179/190 (94.21%), Query Frame = 0


Query: 1   MDRRTFAILCHLLRTVSSLSSIEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSL 60
           MDRRTFAILCHLLR V+ LSS EIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVS 
Sbjct: 40  MDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSR 99

Query: 61  HFNLVLLAVVRLYEELIKRPVPVTNNCNDQRWKCFEVGMNCLGALDGTYIKVNVPATDRP 120
           HFN+VLLAV+RLYEELIKRPVPVT+NCNDQRWKCFE   NCLGALDGTYIKVNVPA DRP
Sbjct: 100 HFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFE---NCLGALDGTYIKVNVPAGDRP 159

Query: 121 TFRTRKGKIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRENGLQVPKGYYYLY 180
           TFRTRKG+IATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDA+SRENGLQVPKGYYYL 
Sbjct: 160 TFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDAISRENGLQVPKGYYYLC 219

Query: 181 DGGYQNAEGF 191
           D GY NAEGF
Sbjct: 220 DAGYPNAEGF 226

[Close]

BLAST of MELO3C029073 vs. NCBI nr
Match: KAA0031556.1 (retrotransposon protein [Cucumis melo var. makuwa] >KAA0033743.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0036353.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0038064.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0038976.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 351.7 bits (901), Expect = 4.5e-93
Identity = 173/190 (91.05%), Postives = 179/190 (94.21%), Query Frame = 0


Query: 1   MDRRTFAILCHLLRTVSSLSSIEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSL 60
           MDRRTFAILCHLLR V+ LSS EIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVS 
Sbjct: 40  MDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSR 99

Query: 61  HFNLVLLAVVRLYEELIKRPVPVTNNCNDQRWKCFEVGMNCLGALDGTYIKVNVPATDRP 120
           HFN+VLLAV+RLYEELIKRPVPVT+NCNDQRWKCFE   NCLGALDGTYIKVNVPA DRP
Sbjct: 100 HFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFE---NCLGALDGTYIKVNVPAGDRP 159

Query: 121 TFRTRKGKIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRENGLQVPKGYYYLY 180
           TFRTRKG+IATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDA+SRENGLQVPKGYYYL 
Sbjct: 160 TFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDAISRENGLQVPKGYYYLC 219

Query: 181 DGGYQNAEGF 191
           D GY NAEGF
Sbjct: 220 DAGYPNAEGF 226

[Close]

BLAST of MELO3C029073 vs. ExPASy TrEMBL
Match: A0A5D3DGC8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold195G00980 PE=3 SV=1)

HSP 1 Score: 427.2 bits (1097), Expect = 4.1e-116
Identity = 207/213 (97.18%), Postives = 208/213 (97.65%), Query Frame = 0


Query: 1   MDRRTFAILCHLLRTVSSLSSIEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSL 60
           MDRRTFAILCHLLRTVSSLSSIEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSL
Sbjct: 1   MDRRTFAILCHLLRTVSSLSSIEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSL 60

Query: 61  HFNLVLLAVVRLYEELIKRPVPVTNNCNDQRWKCFEVGMNCLGALDGTYIKVNVPATDRP 120
           HFNLVLLAVVRLYEELIKRPVPVTNNCNDQRWKCFE   NCLGALDGTYIKVNVPATDRP
Sbjct: 61  HFNLVLLAVVRLYEELIKRPVPVTNNCNDQRWKCFE---NCLGALDGTYIKVNVPATDRP 120

Query: 121 TFRTRKGKIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRENGLQVPKGYYYLY 180
           TFRTRKGKIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRENGLQVPKGYYYLY
Sbjct: 121 TFRTRKGKIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRENGLQVPKGYYYLY 180

Query: 181 DGGYQNAEGFWSRIEASDTICKSDWWRKCANKC 214
           DGGY+NAEGFWSRIEASD ICKSDWWRKC NKC
Sbjct: 181 DGGYENAEGFWSRIEASDIICKSDWWRKCTNKC 210

[Close]

BLAST of MELO3C029073 vs. ExPASy TrEMBL
Match: A0A5A7STY2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold708G00110 PE=3 SV=1)

HSP 1 Score: 352.1 bits (902), Expect = 1.7e-93
Identity = 173/190 (91.05%), Postives = 179/190 (94.21%), Query Frame = 0


Query: 1   MDRRTFAILCHLLRTVSSLSSIEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSL 60
           MDRRTFAILCHLLR V+ LSS EIVDVEEMVAMFLHVLAHD+KNRVIQREFVRSGETVS 
Sbjct: 45  MDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDMKNRVIQREFVRSGETVSR 104

Query: 61  HFNLVLLAVVRLYEELIKRPVPVTNNCNDQRWKCFEVGMNCLGALDGTYIKVNVPATDRP 120
           HFN+VLLAV+RLYEELIKRPVPVT+NCNDQRWKCFE   NCLGALDGTYIKVNVPA DRP
Sbjct: 105 HFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFE---NCLGALDGTYIKVNVPAGDRP 164

Query: 121 TFRTRKGKIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRENGLQVPKGYYYLY 180
           TFRTRKGKIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDA+SRENGLQVPKGYYYL 
Sbjct: 165 TFRTRKGKIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDAISRENGLQVPKGYYYLC 224

Query: 181 DGGYQNAEGF 191
           D GY NAEGF
Sbjct: 225 DAGYPNAEGF 231

[Close]

BLAST of MELO3C029073 vs. ExPASy TrEMBL
Match: A0A5D3D7X8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G001080 PE=3 SV=1)

HSP 1 Score: 351.7 bits (901), Expect = 2.2e-93
Identity = 173/190 (91.05%), Postives = 179/190 (94.21%), Query Frame = 0


Query: 1   MDRRTFAILCHLLRTVSSLSSIEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSL 60
           MDRRTFAILCHLLR V+ LSS EIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVS 
Sbjct: 40  MDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSR 99

Query: 61  HFNLVLLAVVRLYEELIKRPVPVTNNCNDQRWKCFEVGMNCLGALDGTYIKVNVPATDRP 120
           HFN+VLLAV+RLYEELIKRPVPVT+NCNDQRWKCFE   NCLGALDGTYIKVNVPA DRP
Sbjct: 100 HFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFE---NCLGALDGTYIKVNVPAGDRP 159

Query: 121 TFRTRKGKIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRENGLQVPKGYYYLY 180
           TFRTRKG+IATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDA+SRENGLQVPKGYYYL 
Sbjct: 160 TFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDAISRENGLQVPKGYYYLC 219

Query: 181 DGGYQNAEGF 191
           D GY NAEGF
Sbjct: 220 DAGYPNAEGF 226

[Close]

BLAST of MELO3C029073 vs. ExPASy TrEMBL
Match: A0A5A7VH63 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G001170 PE=3 SV=1)

HSP 1 Score: 351.7 bits (901), Expect = 2.2e-93
Identity = 173/190 (91.05%), Postives = 179/190 (94.21%), Query Frame = 0


Query: 1   MDRRTFAILCHLLRTVSSLSSIEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSL 60
           MDRRTFAILCHLLR V+ LSS EIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVS 
Sbjct: 40  MDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSR 99

Query: 61  HFNLVLLAVVRLYEELIKRPVPVTNNCNDQRWKCFEVGMNCLGALDGTYIKVNVPATDRP 120
           HFN+VLLAV+RLYEELIKRPVPVT+NCNDQRWKCFE   NCLGALDGTYIKVNVPA DRP
Sbjct: 100 HFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFE---NCLGALDGTYIKVNVPAGDRP 159

Query: 121 TFRTRKGKIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRENGLQVPKGYYYLY 180
           TFRTRKG+IATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDA+SRENGLQVPKGYYYL 
Sbjct: 160 TFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDAISRENGLQVPKGYYYLC 219

Query: 181 DGGYQNAEGF 191
           D GY NAEGF
Sbjct: 220 DAGYPNAEGF 226

[Close]

BLAST of MELO3C029073 vs. ExPASy TrEMBL
Match: A0A5A7UST8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold288G00660 PE=3 SV=1)

HSP 1 Score: 351.7 bits (901), Expect = 2.2e-93
Identity = 173/190 (91.05%), Postives = 179/190 (94.21%), Query Frame = 0


Query: 1   MDRRTFAILCHLLRTVSSLSSIEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSL 60
           MDRRTFAILCHLLR V+ LSS EIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVS 
Sbjct: 40  MDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSR 99

Query: 61  HFNLVLLAVVRLYEELIKRPVPVTNNCNDQRWKCFEVGMNCLGALDGTYIKVNVPATDRP 120
           HFN+VLLAV+RLYEELIKRPVPVT+NCNDQRWKCFE   NCLGALDGTYIKVNVPA DRP
Sbjct: 100 HFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFE---NCLGALDGTYIKVNVPAGDRP 159

Query: 121 TFRTRKGKIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRENGLQVPKGYYYLY 180
           TFRTRKG+IATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDA+SRENGLQVPKGYYYL 
Sbjct: 160 TFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDAISRENGLQVPKGYYYLC 219

Query: 181 DGGYQNAEGF 191
           D GY NAEGF
Sbjct: 220 DAGYPNAEGF 226

[Close]

BLAST of MELO3C029073 vs. TAIR 10
Match: AT5G41980.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 131.7 bits (330), Expect = 6.9e-31
Identity = 72/190 (37.89%), Postives = 105/190 (55.26%), Query Frame = 0


Query: 1   MDRRTFAILCHLLRTVSSLSSIEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSL 60
           MD+  F  LC LL+T   L     + +E  +A+FL ++ H+++ R +Q  F  SGET+S 
Sbjct: 48  MDKPVFYKLCDLLQTRGLLRHTNRIKIEAQLAIFLFIIGHNLRTRAVQELFCYSGETISR 107

Query: 61  HFNLVLLAVVRLYEELIKRPVPVTNNCNDQRWKCFEVGMNCLGALDGTYIKVNVPATDRP 120
           HFN VL AV+ + ++  +      N+ +D          +C+G +D  +I V V   ++ 
Sbjct: 108 HFNNVLNAVIAISKDFFQ-----PNSNSDTLENDDPYFKDCVGVVDSFHIPVMVGVDEQG 167

Query: 121 TFRTRKGKIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRENGLQVPKGYYYLY 180
            FR   G +  NVL        F YVLAGWEGSA+D ++L  AL+R N LQVP+G YY+ 
Sbjct: 168 PFRNGNGLLTQNVLAASSFDLRFNYVLAGWEGSASDQQVLNAALTRRNKLQVPQGKYYIV 227

Query: 181 DGGYQNAEGF 191
           D  Y N  GF
Sbjct: 228 DNKYPNLPGF 232

[Close]

BLAST of MELO3C029073 vs. TAIR 10
Match: AT1G43722.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G28730.1); Has 924 Blast hits to 912 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 222; Fungi - 31; Plants - 661; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). )

HSP 1 Score: 92.8 bits (229), Expect = 3.5e-19
Identity = 60/200 (30.00%), Postives = 94/200 (47.00%), Query Frame = 0


Query: 6   FAILCHLLRTVSSLSSIEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSLHFNLV 65
           F  LC++L+T   L     + +EE VAMFL +  H+   R +   F R+ ETV   F  V
Sbjct: 77  FTTLCNMLQTNYDLQPTLNISIEESVAMFLRICGHNEVYRDVGLRFGRNQETVQRKFREV 136

Query: 66  LLAVVRLYEELIKRP-------VPVTNNCNDQRWKCFEVGMNCLGALDGTYIKVNVPATD 125
           L A   L  + I+ P       +P     + + W  F      +GA+DGT++ V V    
Sbjct: 137 LTATELLACDYIRTPTRQELYRIPERLQVDQRYWPYFS---GFVGAMDGTHVCVKVKPDL 196

Query: 126 RPTFRTRKGKIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRENGLQVPKG-YY 185
           +  +  R    + N++ +CD K  F Y+  G  GS  D+ +L+ A   ++   +P    Y
Sbjct: 197 QGMYWNRHDNASLNIMAICDLKMLFTYIWNGAPGSCYDTAVLQIAQQSDSEFPLPPSEKY 256

Query: 186 YLYDGGYQNAEGFWSRIEAS 198
           YL D GY N +G  +   +S
Sbjct: 257 YLVDSGYPNKQGLLAPYRSS 273

[Close]

BLAST of MELO3C029073 vs. TAIR 10
Match: AT5G28950.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41980.1); Has 448 Blast hits to 446 proteins in 74 species: Archae - 0; Bacteria - 0; Metazoa - 31; Fungi - 21; Plants - 396; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 81.6 bits (200), Expect = 8.1e-16
Identity = 38/76 (50.00%), Postives = 53/76 (69.74%), Query Frame = 0


Query: 100 NCLGALDGTYIKVNVPATDRPTFRTRKGKIATNVLGVCDTKGDFVYVLAGWEGSAADSRI 159
           +C+GA+D T+I   V     P+FR RKG I+ N+L  C+   +F+YVL+GWEGSA DS++
Sbjct: 24  DCVGAIDDTHIFAMVSQKKMPSFRNRKGDISQNMLAACNFDVEFMYVLSGWEGSAHDSKV 83

Query: 160 LRDALSR-ENGLQVPK 175
           L DAL+R  N L VP+
Sbjct: 84  LNDALTRNSNRLPVPE 99

[Close]

BLAST of MELO3C029073 vs. TAIR 10
Match: AT5G35695.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41980.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 45.8 bits (107), Expect = 5.0e-05
Identity = 23/48 (47.92%), Postives = 29/48 (60.42%), Query Frame = 0


Query: 143 FVYVLAGWEGSAADSRILRDALSRENGLQVPKGYYYLYDGGYQNAEGF 191
           F+YVL+GWEGSA DSR+L DAL +          +YL D G+ N   F
Sbjct: 25  FIYVLSGWEGSAHDSRVLSDALRK----------FYLVDCGFANRLNF 62

The following BLAST results are available for this feature:

BLAST of MELO3C029073 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK22656.1	8.5e-116	97.18	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0032767.1	3.5e-93	91.05	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0056561.1	4.5e-93	91.05	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0064809.1	4.5e-93	91.05	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0031556.1	4.5e-93	91.05	retrotransposon protein [Cucumis melo var. makuwa] >KAA0033743.1 retrotransposon...	[more]

BLAST of MELO3C029073 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C029073 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DGC8	4.1e-116	97.18	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7STY2	1.7e-93	91.05	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3D7X8	2.2e-93	91.05	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7VH63	2.2e-93	91.05	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7UST8	2.2e-93	91.05	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of MELO3C029073 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G41980.1	6.9e-31	37.89	CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (Int...	[more]
AT1G43722.1	3.5e-19	30.00	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G28950.1	8.1e-16	50.00	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G35695.1	5.0e-05	47.92	CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (Int...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027806	Harbinger transposase-derived nuclease domain	PFAM	PF13359	DDE_Tnp_4	coord: 105..188 e-value: 1.8E-10 score: 40.7
None	No IPR available	PANTHER	PTHR22930	UNCHARACTERIZED	coord: 1..189
None	No IPR available	PANTHER	PTHR22930:SF216	OS11G0577650 PROTEIN	coord: 1..189

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C029073.1	MELO3C029073.1	mRNA