MELO3C029066 (gene) Melon (DHL92) v4

Overview
NameMELO3C029066
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionGag-pol polyprotein
Locationchr11: 6546966 .. 6547196 (-)
RNA-Seq ExpressionMELO3C029066
SyntenyMELO3C029066
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTGAGTATCATGGATTTCTGGGAATCACTGTGGTGGCAAGCTCTCAATCTTTGCATCTGTCTATTGATGATTTGGCTTCTGTCTTATCTCGAGGAACATTGTCAGTTTGGCCGGTGAATGAGATTTTTGTTGTATCCCTTAGTGTTAAACATGTCATACTCCATAAGATTGACTTTACAAACTGGTTTTCTTCGGCGTGTGCTCCCAGTGCAGCTGATCAATCTTAA

mRNA sequence

ATGTTTGAGTATCATGGATTTCTGGGAATCACTGTGGTGGCAAGCTCTCAATCTTTGCATCTGTCTATTGATGATTTGGCTTCTGTCTTATCTCGAGGAACATTGTCAGTTTGGCCGGTGAATGAGATTTTTGTTGTATCCCTTAGTGTTAAACATGTCATACTCCATAAGATTGACTTTACAAACTGGTTTTCTTCGGCGTGTGCTCCCAGTGCAGCTGATCAATCTTAA

Coding sequence (CDS)

ATGTTTGAGTATCATGGATTTCTGGGAATCACTGTGGTGGCAAGCTCTCAATCTTTGCATCTGTCTATTGATGATTTGGCTTCTGTCTTATCTCGAGGAACATTGTCAGTTTGGCCGGTGAATGAGATTTTTGTTGTATCCCTTAGTGTTAAACATGTCATACTCCATAAGATTGACTTTACAAACTGGTTTTCTTCGGCGTGTGCTCCCAGTGCAGCTGATCAATCTTAA

Protein sequence

MFEYHGFLGITVVASSQSLHLSIDDLASVLSRGTLSVWPVNEIFVVSLSVKHVILHKIDFTNWFSSACAPSAADQS
Homology
BLAST of MELO3C029066 vs. NCBI nr
Match: KAA0043000.1 (uncharacterized protein E6C27_scaffold75G00740 [Cucumis melo var. makuwa])

HSP 1 Score: 144.1 bits (362), Expect = 5.1e-31
Identity = 72/76 (94.74%), Postives = 73/76 (96.05%), Query Frame = 0

Query: 1  MFEYHGFLGITVVASSQSLHLSIDDLASVLSRGTLSVWPVNEIFVVSLSVKHVILHKIDF 60
          MFEYHGFLGITVVASSQSLHLSIDDLASVLSRGTLSVWPVNEI  VSLSVKHVILHKIDF
Sbjct: 1  MFEYHGFLGITVVASSQSLHLSIDDLASVLSRGTLSVWPVNEISAVSLSVKHVILHKIDF 60

Query: 61 TNWFSSACAPSAADQS 77
          TNWF S+CAPSAADQS
Sbjct: 61 TNWFPSSCAPSAADQS 76

BLAST of MELO3C029066 vs. NCBI nr
Match: TYK05700.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 113.2 bits (282), Expect = 9.7e-22
Identity = 58/75 (77.33%), Postives = 63/75 (84.00%), Query Frame = 0

Query: 2   FEYHGFLGITVVASSQSLHLSIDDLASVLSRGTLSVWPVNEIFVVSLSVKHVILHKIDFT 61
           ++YHGFLGI VVASSQS HLSIDDL  VLSRGTL VW VNE   VSLSVK+VIL+KIDFT
Sbjct: 348 WKYHGFLGIAVVASSQSSHLSIDDLTYVLSRGTLPVWSVNETSAVSLSVKYVILYKIDFT 407

Query: 62  NWFSSACAPSAADQS 77
           NWF S+ APS ADQS
Sbjct: 408 NWFPSSRAPSVADQS 422

BLAST of MELO3C029066 vs. NCBI nr
Match: KAA0058376.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK26885.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 112.5 bits (280), Expect = 1.6e-21
Identity = 58/74 (78.38%), Postives = 65/74 (87.84%), Query Frame = 0

Query: 3   EYHGFLGITVVASSQSLHLSIDDLASVLSRGTLSVWPVNEIFVVSLSVKHVILHKIDFTN 62
           +YHGFLGIT+VA+SQS HLS D+L SVLS+GTLSVW VNEI VVSLSVK+VILHKI  TN
Sbjct: 68  QYHGFLGITMVANSQSSHLSNDELTSVLSQGTLSVWSVNEISVVSLSVKYVILHKIGITN 127

Query: 63  WFSSACAPSAADQS 77
           WFSS+ A SAADQS
Sbjct: 128 WFSSSHASSAADQS 141

BLAST of MELO3C029066 vs. NCBI nr
Match: KAA0045422.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK04274.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 109.0 bits (271), Expect = 1.8e-20
Identity = 59/69 (85.51%), Postives = 60/69 (86.96%), Query Frame = 0

Query: 8   LGITVVASSQSLHLSIDDLASVLSRGTLSVWPVNEIFVVSLSVKHVILHKIDFTNWFSSA 67
           LGI VVASSQS HLSID LASVLSRGTLSVW VNEI VVSLSVK VILHKIDFTNWF S+
Sbjct: 296 LGIVVVASSQSSHLSIDVLASVLSRGTLSVWSVNEICVVSLSVKSVILHKIDFTNWFPSS 355

Query: 68  CAPSAADQS 77
             PSAADQS
Sbjct: 356 RGPSAADQS 364

BLAST of MELO3C029066 vs. NCBI nr
Match: TYK21770.1 (uncharacterized protein E5676_scaffold1721G00230 [Cucumis melo var. makuwa])

HSP 1 Score: 102.4 bits (254), Expect = 1.7e-18
Identity = 54/76 (71.05%), Postives = 60/76 (78.95%), Query Frame = 0

Query: 1  MFEYHGFLGITVVASSQSLHLSIDDLASVLSRGTLSVWPVNEIFVVSLSVKHVILHKIDF 60
          MFEYHG LGI VVAS QSLHLS D+L SVLSRGTLS   VNEI+ +SLSVK+V+L KID 
Sbjct: 1  MFEYHGILGIAVVASPQSLHLSNDELPSVLSRGTLSALSVNEIYAISLSVKYVLLQKIDI 60

Query: 61 TNWFSSACAPSAADQS 77
          T WF S+ A SA DQS
Sbjct: 61 TIWFPSSHASSATDQS 76

BLAST of MELO3C029066 vs. ExPASy TrEMBL
Match: A0A5A7TI55 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold75G00740 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 2.5e-31
Identity = 72/76 (94.74%), Postives = 73/76 (96.05%), Query Frame = 0

Query: 1  MFEYHGFLGITVVASSQSLHLSIDDLASVLSRGTLSVWPVNEIFVVSLSVKHVILHKIDF 60
          MFEYHGFLGITVVASSQSLHLSIDDLASVLSRGTLSVWPVNEI  VSLSVKHVILHKIDF
Sbjct: 1  MFEYHGFLGITVVASSQSLHLSIDDLASVLSRGTLSVWPVNEISAVSLSVKHVILHKIDF 60

Query: 61 TNWFSSACAPSAADQS 77
          TNWF S+CAPSAADQS
Sbjct: 61 TNWFPSSCAPSAADQS 76

BLAST of MELO3C029066 vs. ExPASy TrEMBL
Match: A0A5D3C2Y0 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G001810 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 4.7e-22
Identity = 58/75 (77.33%), Postives = 63/75 (84.00%), Query Frame = 0

Query: 2   FEYHGFLGITVVASSQSLHLSIDDLASVLSRGTLSVWPVNEIFVVSLSVKHVILHKIDFT 61
           ++YHGFLGI VVASSQS HLSIDDL  VLSRGTL VW VNE   VSLSVK+VIL+KIDFT
Sbjct: 348 WKYHGFLGIAVVASSQSSHLSIDDLTYVLSRGTLPVWSVNETSAVSLSVKYVILYKIDFT 407

Query: 62  NWFSSACAPSAADQS 77
           NWF S+ APS ADQS
Sbjct: 408 NWFPSSRAPSVADQS 422

BLAST of MELO3C029066 vs. ExPASy TrEMBL
Match: A0A5A7UW34 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2133G00280 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 8.0e-22
Identity = 58/74 (78.38%), Postives = 65/74 (87.84%), Query Frame = 0

Query: 3   EYHGFLGITVVASSQSLHLSIDDLASVLSRGTLSVWPVNEIFVVSLSVKHVILHKIDFTN 62
           +YHGFLGIT+VA+SQS HLS D+L SVLS+GTLSVW VNEI VVSLSVK+VILHKI  TN
Sbjct: 68  QYHGFLGITMVANSQSSHLSNDELTSVLSQGTLSVWSVNEISVVSLSVKYVILHKIGITN 127

Query: 63  WFSSACAPSAADQS 77
           WFSS+ A SAADQS
Sbjct: 128 WFSSSHASSAADQS 141

BLAST of MELO3C029066 vs. ExPASy TrEMBL
Match: A0A5A7TPX9 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold4559G00270 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 8.8e-21
Identity = 59/69 (85.51%), Postives = 60/69 (86.96%), Query Frame = 0

Query: 8   LGITVVASSQSLHLSIDDLASVLSRGTLSVWPVNEIFVVSLSVKHVILHKIDFTNWFSSA 67
           LGI VVASSQS HLSID LASVLSRGTLSVW VNEI VVSLSVK VILHKIDFTNWF S+
Sbjct: 296 LGIVVVASSQSSHLSIDVLASVLSRGTLSVWSVNEICVVSLSVKSVILHKIDFTNWFPSS 355

Query: 68  CAPSAADQS 77
             PSAADQS
Sbjct: 356 RGPSAADQS 364

BLAST of MELO3C029066 vs. ExPASy TrEMBL
Match: A0A5D3DEE6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1721G00230 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 8.3e-19
Identity = 54/76 (71.05%), Postives = 60/76 (78.95%), Query Frame = 0

Query: 1  MFEYHGFLGITVVASSQSLHLSIDDLASVLSRGTLSVWPVNEIFVVSLSVKHVILHKIDF 60
          MFEYHG LGI VVAS QSLHLS D+L SVLSRGTLS   VNEI+ +SLSVK+V+L KID 
Sbjct: 1  MFEYHGILGIAVVASPQSLHLSNDELPSVLSRGTLSALSVNEIYAISLSVKYVLLQKIDI 60

Query: 61 TNWFSSACAPSAADQS 77
          T WF S+ A SA DQS
Sbjct: 61 TIWFPSSHASSATDQS 76

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0043000.15.1e-3194.74uncharacterized protein E6C27_scaffold75G00740 [Cucumis melo var. makuwa][more]
TYK05700.19.7e-2277.33gag-pol polyprotein [Cucumis melo var. makuwa][more]
KAA0058376.11.6e-2178.38gag-pol polyprotein [Cucumis melo var. makuwa] >TYK26885.1 gag-pol polyprotein [... [more]
KAA0045422.11.8e-2085.51gag-pol polyprotein [Cucumis melo var. makuwa] >TYK04274.1 gag-pol polyprotein [... [more]
TYK21770.11.7e-1871.05uncharacterized protein E5676_scaffold1721G00230 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7TI552.5e-3194.74Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3C2Y04.7e-2277.33Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G0... [more]
A0A5A7UW348.0e-2278.38Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2133... [more]
A0A5A7TPX98.8e-2185.51Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold4559... [more]
A0A5D3DEE68.3e-1971.05Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C029066.1MELO3C029066.1mRNA