MELO3C029053 (gene) Melon (DHL92) v4

Overview


Name	MELO3C029053
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Thioredoxin F-type
Location	chr01: 17205949 .. 17207698 (+)
RNA-Seq Expression	MELO3C029053
Synteny	MELO3C029053

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTTGGGCTCTTGTGATGCATATTGTTAATGGTTACTATTTCCGGTTTGTAAATAAATAAAGAAGTGTATATGGGACAAGATTTTGAAAGACTTTGTTCGGTTTGTAAATAAATAAAATGCTACTACTGATGATTAGTTCTTAAAAAAAATTCTAAGAATTGAAGCAAGTGATATGAAATCTTTTTTGAGTTTCAAATTTATTTTGGTTGGAAGTGTGGGTTTCTTTGCTCTGTTTAGTCGAAGATCGTAATTAAGAGTTATGCCTTCTTGTGTGTTCTCCCATCTACTATGTTTTCTTAACAATAATATCCTAGTATATGATAGTTTCTTAAAAAACATAGCGCACCATGGATTTACTACGTTTCGTTTAGTTTTTCTTATTGTTTTATTTCTTATCCAAATTTGAAGGTTGCTGCAGAATAATAACATTTCCAGTCCAATTCCCATTGAACTCCGAACTGTCCCATTGCTTCAAACATTAGATCTCTCAAACAACCGGTTCTCTTGTCCGATACCAACATCTTTTGCTCAGCTAAACGGTCTACACTATCTGTAAGTGTTTGAGAATTTTCGCCGGTCATTTTTTCTGTTTGGGTTTCTACAATATAGAGGATGTAAAAAACACCTCCAAATTTTCACTTTTTCCAGAGATTTCATCATTTTACATGTATGACTCTAATGAAGTTTCAATTTCTAAAGTTGGATTTTTTGATATTATTTAATGCTCTTTATTCTAAATTTTTCTTAGAGGTCATGTACTTGATGCATAAGTTGTTGCTTGTCTGTTTGCTCCTTTTCTGTTATTTATAAAAATAACTTGCTTTTTCTTACTTTGTCTTGTAATGAGTAGCAGACTGAACAAATATCTTGACGTTGTCTTTCTAAAGCTTGATTGCAACCAAGACAATAAGGTTCATCTCATGATCCCTAATTTCTTGCTGGAAATGTATTTGCAGAATAGTTCATATAAGAAGTAAGAACACTTAAATTGTCTTTATTTGGCAGCCATTGGCAAAGGAACTTGGGATAAAAGTGGTGCCAACTTTCAAAATTCTAAAGGATAAGAAGGTCGTTAAAAAAGTAACTGGAGCAAAGTTTGATGATTTGGTTCATGCCATTGATACTGTAAGATCCAGCTGAAAACTCTCCTCTCTTCTCTTCTTTGTAAATTTAAATAATATGATGCAAGGAAGAGTGTTCGGGGCAGTTATTTATTTACTCTATTAGTTTAATGATTTTGTGTACTATTAAGTGTTAGGGAAGAAGCAATTTGACCATGAGAAATGATTCTGTATATAAAAATGTTTGGGAGATAGACATTTGAATGTGTACAATGACAGTTTCTACATATTCCAAAAATTATTTTGATATATACATTTCTTTATGAGTGGGTTTGAATGTTTTTGTAATTGGGTTTGGGTATGTTTATGGTTTTCTTCTAGTGATAGAACTGCTTACTACTATGCTTGACATGTTTGTTTGTAATAATGGAGATGATAGAAATCAGAAGTTATCAGATTAAATGGTTTATTTTGATATTGCTTGTAGAATGATTGAAGTCATCAGATTGAAAGCTAAGCGATTGTGTAGATAGCCAGACGATCGTTGAAGGTTGAAGACTGAGAATGCGTTTAGAATTTCTTATTTAAGTCTTGTATTAGGATCTTGTTTCATGTACTATTGTAGAATGTATATATAAACACAATATTTAGTTTTCATTTTGTGTATACAAATTTAAAAGATAAA

mRNA sequence

ATGATTTGGGCTCTTGTGATGCATATTGTTAATGGTTACTATTTCCGGTTTCCATTGGCAAAGGAACTTGGGATAAAAGTGGTGCCAACTTTCAAAATTCTAAAGGATAAGAAGGTCGTTAAAAAAGTAACTGGAGCAAAGTTTGATGATTTGGTTCATGCCATTGATACTAATGATTGAAGTCATCAGATTGAAAGCTAAGCGATTGTGTAGATAGCCAGACGATCGTTGAAGGTTGAAGACTGAGAATGCGTTTAGAATTTCTTATTTAAGTCTTGTATTAGGATCTTGTTTCATGTACTATTGTAGAATGTATATATAAACACAATATTTAGTTTTCATTTTGTGTATACAAATTTAAAAGATAAA

Coding sequence (CDS)

ATGATTTGGGCTCTTGTGATGCATATTGTTAATGGTTACTATTTCCGGTTTCCATTGGCAAAGGAACTTGGGATAAAAGTGGTGCCAACTTTCAAAATTCTAAAGGATAAGAAGGTCGTTAAAAAAGTAACTGGAGCAAAGTTTGATGATTTGGTTCATGCCATTGATACTAATGATTGA

Protein sequence

MIWALVMHIVNGYYFRFPLAKELGIKVVPTFKILKDKKVVKKVTGAKFDDLVHAIDTND

Homology

[Close]

BLAST of MELO3C029053 vs. NCBI nr
Match: XP_008443649.1 (PREDICTED: thioredoxin F-type, chloroplastic-like [Cucumis melo])

HSP 1 Score: 79.0 bits (193), Expect = 1.6e-11
Identity = 39/40 (97.50%), Postives = 40/40 (100.00%), Query Frame = 0


Query: 18  PLAKELGIKVVPTFKILKDKKVVKKVTGAKFDDLVHAIDT 58
           PLAKELGIKVVPTFKILKDKKVVK+VTGAKFDDLVHAIDT
Sbjct: 137 PLAKELGIKVVPTFKILKDKKVVKEVTGAKFDDLVHAIDT 176

[Close]

BLAST of MELO3C029053 vs. NCBI nr
Match: TYK18821.1 (thioredoxin F-type [Cucumis melo var. makuwa])

HSP 1 Score: 79.0 bits (193), Expect = 1.6e-11
Identity = 39/40 (97.50%), Postives = 40/40 (100.00%), Query Frame = 0


Query: 18  PLAKELGIKVVPTFKILKDKKVVKKVTGAKFDDLVHAIDT 58
           PLAKELGIKVVPTFKILKDKKVVK+VTGAKFDDLVHAIDT
Sbjct: 83  PLAKELGIKVVPTFKILKDKKVVKEVTGAKFDDLVHAIDT 122

[Close]

BLAST of MELO3C029053 vs. NCBI nr
Match: KAA0051449.1 (thioredoxin F-type [Cucumis melo var. makuwa])

HSP 1 Score: 79.0 bits (193), Expect = 1.6e-11
Identity = 39/40 (97.50%), Postives = 40/40 (100.00%), Query Frame = 0


Query: 18  PLAKELGIKVVPTFKILKDKKVVKKVTGAKFDDLVHAIDT 58
           PLAKELGIKVVPTFKILKDKKVVK+VTGAKFDDLVHAIDT
Sbjct: 226 PLAKELGIKVVPTFKILKDKKVVKEVTGAKFDDLVHAIDT 265

[Close]

BLAST of MELO3C029053 vs. NCBI nr
Match: KAA0038181.1 (thioredoxin F-type [Cucumis melo var. makuwa])

HSP 1 Score: 79.0 bits (193), Expect = 1.6e-11
Identity = 39/40 (97.50%), Postives = 40/40 (100.00%), Query Frame = 0


Query: 18 PLAKELGIKVVPTFKILKDKKVVKKVTGAKFDDLVHAIDT 58
          PLAKELGIKVVPTFKILKDKKVVK+VTGAKFDDLVHAIDT
Sbjct: 28 PLAKELGIKVVPTFKILKDKKVVKEVTGAKFDDLVHAIDT 67

[Close]

BLAST of MELO3C029053 vs. NCBI nr
Match: KAA0060434.1 (thioredoxin F-type [Cucumis melo var. makuwa] >TYK18523.1 thioredoxin F-type [Cucumis melo var. makuwa])

HSP 1 Score: 79.0 bits (193), Expect = 1.6e-11
Identity = 39/40 (97.50%), Postives = 40/40 (100.00%), Query Frame = 0


Query: 18 PLAKELGIKVVPTFKILKDKKVVKKVTGAKFDDLVHAIDT 58
          PLAKELGIKVVPTFKILKDKKVVK+VTGAKFDDLVHAIDT
Sbjct: 24 PLAKELGIKVVPTFKILKDKKVVKEVTGAKFDDLVHAIDT 63

[Close]

BLAST of MELO3C029053 vs. ExPASy Swiss-Prot
Match: P29450 (Thioredoxin F-type, chloroplastic OS=Pisum sativum OX=3888 PE=2 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.2e-11
Identity = 35/39 (89.74%), Postives = 37/39 (94.87%), Query Frame = 0


Query: 19  LAKELGIKVVPTFKILKDKKVVKKVTGAKFDDLVHAIDT 58
           LAKELGIKVVPTFKILKD K+VK+VTGAKFDDLV AIDT
Sbjct: 140 LAKELGIKVVPTFKILKDNKIVKEVTGAKFDDLVAAIDT 178

[Close]

BLAST of MELO3C029053 vs. ExPASy Swiss-Prot
Match: Q9XFH8 (Thioredoxin F1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At3g02730 PE=1 SV=2)

HSP 1 Score: 69.3 bits (168), Expect = 1.6e-11
Identity = 34/40 (85.00%), Postives = 38/40 (95.00%), Query Frame = 0


Query: 18  PLAKELGIKVVPTFKILKDKKVVKKVTGAKFDDLVHAIDT 58
           PLAKELGI+VVPTFKILKD KVVK+VTGAK+DDLV AI+T
Sbjct: 132 PLAKELGIRVVPTFKILKDNKVVKEVTGAKYDDLVAAIET 171

[Close]

BLAST of MELO3C029053 vs. ExPASy Swiss-Prot
Match: O48897 (Thioredoxin F-type, chloroplastic OS=Brassica napus OX=3708 GN=TRXF PE=2 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 4.7e-11
Identity = 33/40 (82.50%), Postives = 38/40 (95.00%), Query Frame = 0


Query: 18  PLAKELGIKVVPTFKILKDKKVVKKVTGAKFDDLVHAIDT 58
           PLAKELGI+VVPTFKILKD +VVK+VTGAK+DDLV AI+T
Sbjct: 135 PLAKELGIRVVPTFKILKDNQVVKEVTGAKYDDLVAAIET 174

[Close]

BLAST of MELO3C029053 vs. ExPASy Swiss-Prot
Match: Q9XFH9 (Thioredoxin F2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At5g16400 PE=1 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 4.0e-10
Identity = 31/39 (79.49%), Postives = 37/39 (94.87%), Query Frame = 0


Query: 18  PLAKELGIKVVPTFKILKDKKVVKKVTGAKFDDLVHAID 57
           PLAKELGI+VVPTFKILKD KVVK+VTGAK++DL+ AI+
Sbjct: 142 PLAKELGIRVVPTFKILKDNKVVKEVTGAKYEDLLAAIE 180

[Close]

BLAST of MELO3C029053 vs. ExPASy Swiss-Prot
Match: Q8S091 (Thioredoxin F, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0913000 PE=2 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 5.2e-10
Identity = 32/39 (82.05%), Postives = 36/39 (92.31%), Query Frame = 0


Query: 19  LAKELGIKVVPTFKILKDKKVVKKVTGAKFDDLVHAIDT 58
           LAKELGIKVVPTFKILKD KVVK+VTGAK D+L+ AI+T
Sbjct: 145 LAKELGIKVVPTFKILKDGKVVKEVTGAKLDELIQAIET 183

[Close]

BLAST of MELO3C029053 vs. ExPASy TrEMBL
Match: A0A5A7UZH3 (Thioredoxin F-type OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G00220 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 7.6e-12
Identity = 39/40 (97.50%), Postives = 40/40 (100.00%), Query Frame = 0


Query: 18 PLAKELGIKVVPTFKILKDKKVVKKVTGAKFDDLVHAIDT 58
          PLAKELGIKVVPTFKILKDKKVVK+VTGAKFDDLVHAIDT
Sbjct: 24 PLAKELGIKVVPTFKILKDKKVVKEVTGAKFDDLVHAIDT 63

[Close]

BLAST of MELO3C029053 vs. ExPASy TrEMBL
Match: A0A5D3D5I8 (Thioredoxin F-type OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold204G00110 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 7.6e-12
Identity = 39/40 (97.50%), Postives = 40/40 (100.00%), Query Frame = 0


Query: 18  PLAKELGIKVVPTFKILKDKKVVKKVTGAKFDDLVHAIDT 58
           PLAKELGIKVVPTFKILKDKKVVK+VTGAKFDDLVHAIDT
Sbjct: 83  PLAKELGIKVVPTFKILKDKKVVKEVTGAKFDDLVHAIDT 122

[Close]

BLAST of MELO3C029053 vs. ExPASy TrEMBL
Match: A0A5A7T969 (Thioredoxin F-type OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold270G00110 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 7.6e-12
Identity = 39/40 (97.50%), Postives = 40/40 (100.00%), Query Frame = 0


Query: 18 PLAKELGIKVVPTFKILKDKKVVKKVTGAKFDDLVHAIDT 58
          PLAKELGIKVVPTFKILKDKKVVK+VTGAKFDDLVHAIDT
Sbjct: 28 PLAKELGIKVVPTFKILKDKKVVKEVTGAKFDDLVHAIDT 67

[Close]

BLAST of MELO3C029053 vs. ExPASy TrEMBL
Match: A0A5A7UDC9 (Thioredoxin F-type OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55G002070 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 7.6e-12
Identity = 39/40 (97.50%), Postives = 40/40 (100.00%), Query Frame = 0


Query: 18  PLAKELGIKVVPTFKILKDKKVVKKVTGAKFDDLVHAIDT 58
           PLAKELGIKVVPTFKILKDKKVVK+VTGAKFDDLVHAIDT
Sbjct: 226 PLAKELGIKVVPTFKILKDKKVVKEVTGAKFDDLVHAIDT 265

[Close]

BLAST of MELO3C029053 vs. ExPASy TrEMBL
Match: A0A1S3B9B3 (thioredoxin F-type, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103487196 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 7.6e-12
Identity = 39/40 (97.50%), Postives = 40/40 (100.00%), Query Frame = 0


Query: 18  PLAKELGIKVVPTFKILKDKKVVKKVTGAKFDDLVHAIDT 58
           PLAKELGIKVVPTFKILKDKKVVK+VTGAKFDDLVHAIDT
Sbjct: 137 PLAKELGIKVVPTFKILKDKKVVKEVTGAKFDDLVHAIDT 176

[Close]

BLAST of MELO3C029053 vs. TAIR 10
Match: AT3G02730.1 (thioredoxin F-type 1 )

HSP 1 Score: 69.3 bits (168), Expect = 1.2e-12
Identity = 34/40 (85.00%), Postives = 38/40 (95.00%), Query Frame = 0


Query: 18  PLAKELGIKVVPTFKILKDKKVVKKVTGAKFDDLVHAIDT 58
           PLAKELGI+VVPTFKILKD KVVK+VTGAK+DDLV AI+T
Sbjct: 132 PLAKELGIRVVPTFKILKDNKVVKEVTGAKYDDLVAAIET 171

[Close]

BLAST of MELO3C029053 vs. TAIR 10
Match: AT5G16400.1 (thioredoxin F2 )

HSP 1 Score: 64.7 bits (156), Expect = 2.9e-11
Identity = 31/39 (79.49%), Postives = 37/39 (94.87%), Query Frame = 0


Query: 18  PLAKELGIKVVPTFKILKDKKVVKKVTGAKFDDLVHAID 57
           PLAKELGI+VVPTFKILKD KVVK+VTGAK++DL+ AI+
Sbjct: 142 PLAKELGIRVVPTFKILKDNKVVKEVTGAKYEDLLAAIE 180

The following BLAST results are available for this feature:

BLAST of MELO3C029053 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008443649.1	1.6e-11	97.50	PREDICTED: thioredoxin F-type, chloroplastic-like [Cucumis melo]	[more]
TYK18821.1	1.6e-11	97.50	thioredoxin F-type [Cucumis melo var. makuwa]	[more]
KAA0051449.1	1.6e-11	97.50	thioredoxin F-type [Cucumis melo var. makuwa]	[more]
KAA0038181.1	1.6e-11	97.50	thioredoxin F-type [Cucumis melo var. makuwa]	[more]
KAA0060434.1	1.6e-11	97.50	thioredoxin F-type [Cucumis melo var. makuwa] >TYK18523.1 thioredoxin F-type [Cu...	[more]

BLAST of MELO3C029053 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P29450	1.2e-11	89.74	Thioredoxin F-type, chloroplastic OS=Pisum sativum OX=3888 PE=2 SV=1	[more]
Q9XFH8	1.6e-11	85.00	Thioredoxin F1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At3g02730 PE=1 ...	[more]
O48897	4.7e-11	82.50	Thioredoxin F-type, chloroplastic OS=Brassica napus OX=3708 GN=TRXF PE=2 SV=1	[more]
Q9XFH9	4.0e-10	79.49	Thioredoxin F2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At5g16400 PE=1 ...	[more]
Q8S091	5.2e-10	82.05	Thioredoxin F, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g09...	[more]

BLAST of MELO3C029053 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UZH3	7.6e-12	97.50	Thioredoxin F-type OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G0...	[more]
A0A5D3D5I8	7.6e-12	97.50	Thioredoxin F-type OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold204G0...	[more]
A0A5A7T969	7.6e-12	97.50	Thioredoxin F-type OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold270G0...	[more]
A0A5A7UDC9	7.6e-12	97.50	Thioredoxin F-type OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55G00...	[more]
A0A1S3B9B3	7.6e-12	97.50	thioredoxin F-type, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103487196 P...	[more]

BLAST of MELO3C029053 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G02730.1	1.2e-12	85.00	thioredoxin F-type 1	[more]
AT5G16400.1	2.9e-11	79.49	thioredoxin F2	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.40.30.10	Glutaredoxin	coord: 11..58 e-value: 4.1E-7 score: 31.6
None	No IPR available	PANTHER	PTHR10438	THIOREDOXIN	coord: 18..57
None	No IPR available	PANTHER	PTHR10438:SF382	THIOREDOXIN F2, CHLOROPLASTIC	coord: 18..57
IPR036249	Thioredoxin-like superfamily	SUPERFAMILY	52833	Thioredoxin-like	coord: 18..56

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C029053.1	MELO3C029053.1	mRNA