MELO3C029040 (gene) Melon (DHL92) v4

Overview
NameMELO3C029040
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionDEAD-box ATP-dependent RNA helicase 32
Locationchr01: 16356978 .. 16359533 (+)
RNA-Seq ExpressionMELO3C029040
SyntenyMELO3C029040
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTAGAATCAAATTAATTGGAGAATTTTTACTGCCAGCTTTGAAATACTTTGTTTGGCTAAAATCTCCAGGTAAGAGATTCTCCTACTAAACCTTCGAACTAAATTTTGATAATGCATTGATGGTAGCTAAAATGCATAACTTGATGCTATTGATAATGAGTGTCATTATATGAATGATTGATGACGATGACTGATATTATGTTTATGACTGGTAGTATGTTGATGACGATGACTGTTGATGTTGATGTTAATGCATGATATATTAATCATATGATTAAGGACGTTAAGATTAATATTCATGTCTTGTTTATGATGTTTATGATGTTTATGATATGCTACATGCTATGGATGGGCGTTCTGTTAACTTTGTCTATTAGAGTCGTACCCACATGGGTGTCCCTCGGGATCACCATCTTTTTATGATTGTGTAGTCCGACGGGATCACCAGTCCAATATGACATAGACATGATTACGAGTGATTCGACGGGTCACTCGTAGTCTAATTGTCTTACTGTTTCCTTCGGGTACACTAAAGACCAGTTTGTCTTAGGTGTCCCTTTAGGTTCACTGAAGACTAGAGATGTTCCAACGGGATTACAGATTGTACGTGTTCGGGAATGTACTATTTCATGGGTACTTCTTTACAGGAATCTAATAGAAAGTTAACAAACACCTAGTGGGACTAGTATAGGTCCCTTACTAAGTATGTTTTATATTCACTCTTTCTATGTTTAATATTTTGGGCAAAGGTAAAGGTAGAGGAAAGCTGGCAAGAGACAGAGAAGGATCCATGGCATGTCATATGGGTACTCAGTTTTGCTTCCGCGTCTATGTATCAGTATTTCAGTATTCTGTTTTTTAATGAAACTTTAGTTTTCCTCTTTTCAAGAAAGTGTCTATTGTTATTGTTTCTTTTAGTAATGACCTCAGCTTAGTATAAAGAGTTGGGTCGTTACAGCTAGCCTCAGATCCTGTTGCAGTGCCTATGAAAAATAAAATGAAGATATGAGATGTGAAGGGGAGGAAATGAGGAAAATGAAGATGCCCTGAATTGTTAAGGAGTGCTTGTTATGCTTCTTTCTCCAAATTTTCCTTCTTTTTTTTTTTTTTTTTTGGTTTTAGGGGGAGGGGTGGGTTTATAAATATACAGCCTTTGACTAAGGTTGTAGGCTGTAGGTGATATATTCTTTTAAATATTCCATTTTGACTCTGAGTAATATATGAGTACATGTAATATTCTACTACCTCAGAATTTGGTAATGATGGCAGTTGCTATGAAGATGTTAGATACAATTGTTGGACATCACTTTGACTAAGCATAATGTTTCATATGTGTTTATATATTGCTAAGAACGCATTAAACAAACGTGGCTGATGATGCTTTGAGTAAAGTTCTTGACCTTGATCGTGGTCATGTAAGAGGATTTGGGTTTGGTGTGACTCGTTCAAAACTATCTCTTTTGTCTCAACAAGATCACAAGTATAAGGTTCTTGAAAAAGAATTGAAGATGAAGGAAGAAATGGTAGAAATGAAAACAATGAAAGATGAAATGATAGAAATGAAAGCACTTATGTTATCTTATTTAAAGAAACAGTTTTTTTTTTTTTTTGTAACTTAGATTATTTTTTCTCTCGTAGTAGTTAACTATATTTTTGGTTTCATAAGAGATTATCATAGACTGAACCAAGTGAGGAACTTTCAAATGCTACTGTAAGTGTGCTTAAGCGATGAAATATTCCTTCAACTTGTCCAATGTCTTCTCCATCAGAAAACTTATTTGTAATAGGATGAAAATTGTTTATGATGTCATTATCTTCTTATTCTAGTATCTCATATTTGTCCTTTGACAGAGTATCAATAACAACAGTTAAATTAAGTGCAAGTTATTAGATTGGTATGGCTCGGGAGAGATTGTTGCTAAAGGAAGATGGTCTTCTAATGATCCAGCTGCTTTGGTTCATCATGTTCCTATTGGTCCACATGCGATTAGAGTATGGGTTGATGTAGCAAAGAAACCAAACGCATATTTGTGGAGGCCAACATCAGAAATGACATGTATTGAAGAAGCTTTGGGAAGTACAGTTGCATGGTCATCTGATAAAGTGATCATTCGTATGTTGTTTAATTCTAATCTTTTTTGTCTACATTTGTTAAATATTTTCTATACTTGTTTAATTAATATATGTTTTATAAATTTATGTAGGTGAATGAAATGGAATTGTCTTAACCAGAGGACTAAAGATTGTACACTTACGACGAACTTTGTTTGTACACTTATGATGAACTTTGTTTGTATTTTGAGGGTTACTTTGTGTGCATGGTTGATACATTACTTAGTAATATGTGTATTTTGATTGTTAATGTGTGTGGTTGGTACATTTAGAATGACTACTATGTTTGGTAATTTTAATACATTATGAATGGAAGTTAATTAATTCAAAAATTATTGGTAGGAAAGTTTGTATCTTTCAAAATGCTTCCTATTCCACTCTTGCCCTTCAACTTGAGGATATGTTTGATAGACAACAATAGTAATCAGAATGGAGGTTAA

mRNA sequence

ATGATTAGAATCAAATTAATTGGAGAATTTTTACTGCCAGCTTTGAAATACTTTGTTTGGCTAAAATCTCCAGGTAAAGGTAGAGGAAAGCTGGCAAGAGACAGAGAAGGATCCATGGCATGTCATATGGGTACTCAGTTTTGCTTCCGCGTCTATGTATCAATTATTTTTTCTCTCGTAGTAGTTAACTATATTTTTGGTTTCATAAGAGATTATCATAGACTGAACCAAGTGAGGAACTTTCAAATGCTACTTATCTCATATTTGTCCTTTGACAGAGTATCAATAACAACAGTTAAATTAAGTGCAAGTTATTAGATTGGTATGGCTCGGGAGAGATTGTTGCTAAAGGAAGATGGTCTTCTAATGATCCAGCTGCTTTGGTTCATCATGTTCCTATTGGTCCACATGCGATTAGAGTATGGGTTGATGTAGCAAAGAAACCAAACGCATATTTGTGGAGGCCAACATCAGAAATGACATGTATTGAAGAAGCTTTGGGAAGTACAGTTGCATGGTCATCTGATAAAGTGATCATTCGAAAGTTTGTATCTTTCAAAATGCTTCCTATTCCACTCTTGCCCTTCAACTTGAGGATATGTTTGATAGACAACAATAGTAATCAGAATGGAGGTTAA

Coding sequence (CDS)

ATGATTAGAATCAAATTAATTGGAGAATTTTTACTGCCAGCTTTGAAATACTTTGTTTGGCTAAAATCTCCAGGTAAAGGTAGAGGAAAGCTGGCAAGAGACAGAGAAGGATCCATGGCATGTCATATGGGTACTCAGTTTTGCTTCCGCGTCTATGTATCAATTATTTTTTCTCTCGTAGTAGTTAACTATATTTTTGGTTTCATAAGAGATTATCATAGACTGAACCAAGTGAGGAACTTTCAAATGCTACTTATCTCATATTTGTCCTTTGACAGAGTATCAATAACAACAGTTAAATTAAGTGCAAGTTATTAG

Protein sequence

MIRIKLIGEFLLPALKYFVWLKSPGKGRGKLARDREGSMACHMGTQFCFRVYVSIIFSLVVVNYIFGFIRDYHRLNQVRNFQMLLISYLSFDRVSITTVKLSASY
Homology
[Close]
BLAST of MELO3C029040 vs. NCBI nr
Match: KAA0033961.1 (DEAD-box ATP-dependent RNA helicase 32 [Cucumis melo var. makuwa] >TYK02583.1 DEAD-box ATP-dependent RNA helicase 32 [Cucumis melo var. makuwa])

HSP 1 Score: 68.6 bits (166), Expect = 3.8e-08
Identity = 43/103 (41.75%), Postives = 49/103 (47.57%), Query Frame = 0 

Query: 1   MIRIKLIGEFLLPALKYFVWLKSP------------------------------------ 60
           MIRIKLIGEFLL   +Y VWLKSP                                    
Sbjct: 1   MIRIKLIGEFLLSTREYLVWLKSPDQHVLGAPPGHRRPDFRSYGSACCTCSGTCQRLGTI 60

[Close]
BLAST of MELO3C029040 vs. NCBI nr
Match: KAA0049914.1 (uncharacterized protein E6C27_scaffold13G00710 [Cucumis melo var. makuwa] >TYK04257.1 uncharacterized protein E5676_scaffold13462G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 67.4 bits (163), Expect = 8.4e-08
Identity = 34/56 (60.71%), Postives = 40/56 (71.43%), Query Frame = 0 

Query: 3  RIKLIGEFLLPALKYFVW---LKSPGKGRGKLARDREGSMACHMGTQFCFRVYVSI 56
          R+ + G   LP L Y  +   + S GKGRGKLA DREGS+ CHMGTQFCFRVYVS+
Sbjct: 7  RLHMFGN--LPVLGYHFFRTLMGSEGKGRGKLASDREGSVTCHMGTQFCFRVYVSV 60

[Close]
BLAST of MELO3C029040 vs. NCBI nr
Match: KAA0052851.1 (hypothetical protein E6C27_scaffold33G00010 [Cucumis melo var. makuwa] >TYK04374.1 hypothetical protein E5676_scaffold675G00500 [Cucumis melo var. makuwa])

HSP 1 Score: 66.2 bits (160), Expect = 1.9e-07
Identity = 28/33 (84.85%), Postives = 31/33 (93.94%), Query Frame = 0 

Query: 23 SPGKGRGKLARDREGSMACHMGTQFCFRVYVSI 56
          S GKGRGKLA+DREGS+ CHMGTQFCFRVYVS+
Sbjct: 66 SEGKGRGKLAKDREGSVTCHMGTQFCFRVYVSV 98

[Close]
BLAST of MELO3C029040 vs. NCBI nr
Match: KAA0051115.1 (uncharacterized protein E6C27_scaffold511G00620 [Cucumis melo var. makuwa])

HSP 1 Score: 65.9 bits (159), Expect = 2.4e-07
Identity = 29/39 (74.36%), Postives = 32/39 (82.05%), Query Frame = 0 

Query: 17  YFVWLKSPGKGRGKLARDREGSMACHMGTQFCFRVYVSI 56
           Y   + S GKGRGKLA DREGS+ CHMGTQFCFRVYVS+
Sbjct: 73  YRTLMGSEGKGRGKLASDREGSVTCHMGTQFCFRVYVSV 111

[Close]
BLAST of MELO3C029040 vs. NCBI nr
Match: KAA0037376.1 (hypothetical protein E6C27_scaffold278G00820 [Cucumis melo var. makuwa] >TYK23113.1 hypothetical protein E5676_scaffold142G001040 [Cucumis melo var. makuwa])

HSP 1 Score: 65.9 bits (159), Expect = 2.4e-07
Identity = 28/31 (90.32%), Postives = 30/31 (96.77%), Query Frame = 0 

Query: 25 GKGRGKLARDREGSMACHMGTQFCFRVYVSI 56
          GKGRGKLARDREGS+ CHMGTQFCFRVYVS+
Sbjct: 63 GKGRGKLARDREGSVTCHMGTQFCFRVYVSV 93

[Close]
BLAST of MELO3C029040 vs. ExPASy TrEMBL
Match: A0A5A7SWX3 (DEAD-box ATP-dependent RNA helicase 32 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold925G00360 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.8e-08
Identity = 43/103 (41.75%), Postives = 49/103 (47.57%), Query Frame = 0 

Query: 1   MIRIKLIGEFLLPALKYFVWLKSP------------------------------------ 60
           MIRIKLIGEFLL   +Y VWLKSP                                    
Sbjct: 1   MIRIKLIGEFLLSTREYLVWLKSPDQHVLGAPPGHRRPDFRSYGSACCTCSGTCQRLGTI 60

[Close]
BLAST of MELO3C029040 vs. ExPASy TrEMBL
Match: A0A5A7U3U8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13462G00010 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 4.1e-08
Identity = 34/56 (60.71%), Postives = 40/56 (71.43%), Query Frame = 0 

Query: 3  RIKLIGEFLLPALKYFVW---LKSPGKGRGKLARDREGSMACHMGTQFCFRVYVSI 56
          R+ + G   LP L Y  +   + S GKGRGKLA DREGS+ CHMGTQFCFRVYVS+
Sbjct: 7  RLHMFGN--LPVLGYHFFRTLMGSEGKGRGKLASDREGSVTCHMGTQFCFRVYVSV 60

[Close]
BLAST of MELO3C029040 vs. ExPASy TrEMBL
Match: A0A5A7UH38 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold675G00500 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 9.1e-08
Identity = 28/33 (84.85%), Postives = 31/33 (93.94%), Query Frame = 0 

Query: 23 SPGKGRGKLARDREGSMACHMGTQFCFRVYVSI 56
          S GKGRGKLA+DREGS+ CHMGTQFCFRVYVS+
Sbjct: 66 SEGKGRGKLAKDREGSVTCHMGTQFCFRVYVSV 98

[Close]
BLAST of MELO3C029040 vs. ExPASy TrEMBL
Match: A0A5A7T5F7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G001040 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.2e-07
Identity = 28/31 (90.32%), Postives = 30/31 (96.77%), Query Frame = 0 

Query: 25 GKGRGKLARDREGSMACHMGTQFCFRVYVSI 56
          GKGRGKLARDREGS+ CHMGTQFCFRVYVS+
Sbjct: 63 GKGRGKLARDREGSVTCHMGTQFCFRVYVSV 93

[Close]
BLAST of MELO3C029040 vs. ExPASy TrEMBL
Match: A0A5D3DAI2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold237G00830 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.2e-07
Identity = 29/39 (74.36%), Postives = 32/39 (82.05%), Query Frame = 0 

Query: 17 YFVWLKSPGKGRGKLARDREGSMACHMGTQFCFRVYVSI 56
          Y   + S GKGRGKLA DREGS+ CHMGTQFCFRVYVS+
Sbjct: 15 YRTLMGSEGKGRGKLASDREGSVTCHMGTQFCFRVYVSV 53

The following BLAST results are available for this feature:
BLAST of MELO3C029040 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0033961.13.8e-0841.75DEAD-box ATP-dependent RNA helicase 32 [Cucumis melo var. makuwa] >TYK02583.1 DE... [more]
KAA0049914.18.4e-0860.71uncharacterized protein E6C27_scaffold13G00710 [Cucumis melo var. makuwa] >TYK04... [more]
KAA0052851.11.9e-0784.85hypothetical protein E6C27_scaffold33G00010 [Cucumis melo var. makuwa] >TYK04374... [more]
KAA0051115.12.4e-0774.36uncharacterized protein E6C27_scaffold511G00620 [Cucumis melo var. makuwa][more]
KAA0037376.12.4e-0790.32hypothetical protein E6C27_scaffold278G00820 [Cucumis melo var. makuwa] >TYK2311... [more]
BLAST of MELO3C029040 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C029040 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7SWX31.8e-0841.75DEAD-box ATP-dependent RNA helicase 32 OS=Cucumis melo var. makuwa OX=1194695 GN... [more]
A0A5A7U3U84.1e-0860.71Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7UH389.1e-0884.85Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7T5F71.2e-0790.32Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3DAI21.2e-0774.36Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of MELO3C029040 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C029040.1MELO3C029040.1mRNA