MELO3C029027 (gene) Melon (DHL92) v4

Overview
NameMELO3C029027
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionRVT_1 domain-containing protein/zf-CCHC domain-containing protein/RVP_2 domain-containing protein
Locationchr01: 15159232 .. 15161225 (+)
RNA-Seq ExpressionMELO3C029027
SyntenyMELO3C029027
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTATGTTGAAGAAGACATGAAGTGTGCAAGACAAACTTCTCTATAGTTCGTTAAGCACATCTTTAGTTTTTTATTGATTTCGAGCTATATAAAAAGAATTAAGAGGTGAAGTTTAAATTTACTGAAAGTTAATTCATTTTCAAACATATTTTATGAAGAAAGCTTGAGCAAATTCTGATGTTCATTAGGTGAATTTTGACAGAGAAGACAGGGGAGATTATTCTCATGTGAAATCAGAAGATCTCTGGTTTTTTAGTATTTCAGGGTGTATCGGTAGATTTAGGATCTCTATTTAGTATGGTTGGAAAGTGTATTCAATTTACTACAACTTTCATGCAGAACTCGTGAACCAAAAACGACTAAAAATAAGTTAAATTATAGGGAAAAGTTAAAGGGGTTGTGGTGTACGCGGTTGTGGGAGTGGTCCTGTTTCGAGGGATGTCTGAGATTATACACAGGGAATCAAATTTATATGTCTTGAGGTAAGTTATAGAGGACCTCAAAATAAAGATTTTAACATAAAGAACTATCATTTTAGTTGAGTATTGGAAGAGTTGTGATCATTTGAATTTCAAGCTGCGAATCTGGAAAATTTTGAGAAATGTGTGAGATATGGTTTTATTTCTTAAATTTAGACTTCTTAAGCATCATCTTTAGTGAGCCATATCAAACATAACATTTAAAGATCATAATATTTAGGTTTCTAATACTCGATTTTGGTTGTTTGACATGCCAAGAGGAAATAGGTCAGGTTTACACACCGGAGAACTAGTCTAAGACTGTGAGTGACAAAAACAAGTTTTGAAAATGATTCTTTTTTAAAAAAAAAATGTTTCTTATAACTACATGTTTTACGTGTTTGACTACAAGTTTGTAAATGATATATGATTTCTATGTTTAGATTTCAAGTATGAGTTTCGAGCTTAGATTTCATAATGGAATCCACATGTTAGCACGTAATTAATGAGTTCTGAAAAGCAGTTGAAATGGCATTTGTTTAAGCAAAGTATAGTTTAAGCTAGAATTATTTTAAGATTTTTGGTTTTTCCACAAACAAGCTGAGTAAGTTTGAGTTTATGCAAGGTTAAGATAAACATACATGTTTTAATGCTTTCATATGCTTTATGATATTTCCATTGACTACATGACTGAGAGCCTGAGGCTAGAGGATACCATGTGTACACAGGTTATGTTTTATTGTTGACGTTGAGTGTACTCTGTGACAACGATGCTGTTGTGAGTGTTGGACGAGCCCCACTACAAAAAGACGATAGGAGTGTTGGGCGGGTCCCACTACATCGTAGAATTAATAAACGTTGGTTGTACTGGGCGTGCCCTACACAACGTAATGAAGTCATGTTAGTTAAATAATTTATAAACAGAAAATGTCTTGCTAGATTTTATAGATATACGTATTGAATGTTTGACGTAGCTGTTTTCTGAAAATATTTATAGTTAACGCTTCGCTTGTTAGATTTATGAGTTTTCAAAGATTATCATGAGATCTGATTTACACCTTTAAAGTATTGTCACACACTGGGCTTTATAGCTTACCCTTCCAAAATGTTTTACCCACTTTCCAGGTAGAGATCGAGTTCCCGGTGCCTGATAGACTGCCTTAGTCTACTGAAGCTCCGATGTCGATTGCCAATACGTGGTTAGAGTTGTACATAGAGTCTGTCGTGTTATGATTTATATATCTTTGTATGATATAGATACTCTACAGTTTGTGTAAGCTTTATTAGTTGTTGTTGTGTAAATCTCTGTTGATTATGTTTTGGTTAAGGTGTCTCCAGGTTGCGAAATCAATTATTTCCGGGCTACACTTCAATGTATGTATATGATTAGTTTAGGTTCCGCTGTGTTGTGTTGCATGTATCATAGTTTATATTCTAGATTAGCAAGTTTATCACGTTAAAGAATCCAGCAGAGTCGACAGATATCGGTAGAGAACAGCGTTGTCGGTCAGCTTTACGCCGTCTTTCGGTCTAA

mRNA sequence

ATGTATGTTGAAGAAGACATGAAAGAAGACAGGGGAGATTATTCTCATGTGAAATCAGAAGATCTCTGGTTTTTTAGTATTTCAGGGTGTATCGGGGTTGTGGTGTACGCGGTTGTGGGAGTGGTCCTGTTTCGAGGGATGTCTGAGATTATACACAGGGAATCAAATTTATATGTCTTGAGGTTTCTAATACTCGATTTTGGTTGTTTGACATGCCAAGAGGAAATAGGTCAGATTTCAAGTATGAGTTTCGAGCTTAGATTTCATAATGGAATCCACATGTTAGCACAGCCTGAGGCTAGAGGATACCATGTGTACACAGGTTATGTTTTATTGTTGACGTTGAGTGTACTCTGTGACAACGATGCTGTTGTGAGTGTTGGACGAGCCCCACTACAAAAAGACGATAGGAGTGTTGGGCGGGTCCCACTACATCGTAGAATTAATAAACGTTGGTTGTACTGGGCGTGCCCTACACAACGTAATGAAGTCATGTGTCTCCAGGTTGCGAAATCAATTATTTCCGGGCTACACTTCAATATTAGCAAGTTTATCACGTTAAAGAATCCAGCAGAGTCGACAGATATCGGTAGAGAACAGCGTTGTCGGTCAGCTTTACGCCGTCTTTCGGTCTAA

Coding sequence (CDS)

ATGTATGTTGAAGAAGACATGAAAGAAGACAGGGGAGATTATTCTCATGTGAAATCAGAAGATCTCTGGTTTTTTAGTATTTCAGGGTGTATCGGGGTTGTGGTGTACGCGGTTGTGGGAGTGGTCCTGTTTCGAGGGATGTCTGAGATTATACACAGGGAATCAAATTTATATGTCTTGAGGTTTCTAATACTCGATTTTGGTTGTTTGACATGCCAAGAGGAAATAGGTCAGATTTCAAGTATGAGTTTCGAGCTTAGATTTCATAATGGAATCCACATGTTAGCACAGCCTGAGGCTAGAGGATACCATGTGTACACAGGTTATGTTTTATTGTTGACGTTGAGTGTACTCTGTGACAACGATGCTGTTGTGAGTGTTGGACGAGCCCCACTACAAAAAGACGATAGGAGTGTTGGGCGGGTCCCACTACATCGTAGAATTAATAAACGTTGGTTGTACTGGGCGTGCCCTACACAACGTAATGAAGTCATGTGTCTCCAGGTTGCGAAATCAATTATTTCCGGGCTACACTTCAATATTAGCAAGTTTATCACGTTAAAGAATCCAGCAGAGTCGACAGATATCGGTAGAGAACAGCGTTGTCGGTCAGCTTTACGCCGTCTTTCGGTCTAA

Protein sequence

MYVEEDMKEDRGDYSHVKSEDLWFFSISGCIGVVVYAVVGVVLFRGMSEIIHRESNLYVLRFLILDFGCLTCQEEIGQISSMSFELRFHNGIHMLAQPEARGYHVYTGYVLLLTLSVLCDNDAVVSVGRAPLQKDDRSVGRVPLHRRINKRWLYWACPTQRNEVMCLQVAKSIISGLHFNISKFITLKNPAESTDIGREQRCRSALRRLSV
Homology
[Close]
BLAST of MELO3C029027 vs. NCBI nr
Match: TYK02787.1 (RVT_1 domain-containing protein/zf-CCHC domain-containing protein/RVP_2 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 128.6 bits (322), Expect = 6.2e-26
Identity = 70/137 (51.09%), Postives = 82/137 (59.85%), Query Frame = 0 

Query: 32  GVVVYAVVGVVLFRGMSEIIHRESNLYVLRFLILDFGCLTCQEEIGQISSMSFELRFHNG 91
           GVVVY +VGVVLFRGMSEIIH+ES+L+VL                               
Sbjct: 718 GVVVYVIVGVVLFRGMSEIIHKESDLHVL------------------------------- 777

Query: 92  IHMLAQPEARGYHVYTGYVLLLTLSVLCDNDAVVSVGRAPLQKDDRSVGRVPLHRRINKR 151
                    RGY V+T Y+ LLTLSVL DN+ ++SV R PL KDD S GR PLHRR +KR
Sbjct: 778 ---------RGYRVHTSYISLLTLSVLRDNNVIMSVERVPLVKDDGSAGRTPLHRRTSKR 814

Query: 152 WLYWACPTQRNEVMCLQ 169
           WLYWAC TQRNEVM ++
Sbjct: 838 WLYWACSTQRNEVMLVK 814

[Close]
BLAST of MELO3C029027 vs. NCBI nr
Match: KAA0041324.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 123.2 bits (308), Expect = 2.6e-24
Identity = 70/137 (51.09%), Postives = 79/137 (57.66%), Query Frame = 0 

Query: 32  GVVVYAVVGVVLFRGMSEIIHRESNLYVLRFLILDFGCLTCQEEIGQISSMSFELRFHNG 91
           GVVVY +VGVVLFRGMSEIIH+ES+L+VLR                              
Sbjct: 738 GVVVYVIVGVVLFRGMSEIIHKESDLHVLR------------------------------ 797

Query: 92  IHMLAQPEARGYHVYTGYVLLLTLSVLCDNDAVVSVGRAPLQKDDRSVGRVPLHRRINKR 151
                           GY+ LLTLSVL DN+ VVSV R PL KDD S GR PLHRR +KR
Sbjct: 798 --------------PRGYISLLTLSVLRDNNVVVSVERVPLVKDDGSAGRTPLHRRTSKR 830

Query: 152 WLYWACPTQRNEVMCLQ 169
           WLYWACPTQRNEVM ++
Sbjct: 858 WLYWACPTQRNEVMLVK 830

[Close]
BLAST of MELO3C029027 vs. NCBI nr
Match: KAA0065516.1 (uncharacterized protein E6C27_scaffold638G00090 [Cucumis melo var. makuwa])

HSP 1 Score: 84.7 bits (208), Expect = 1.0e-12
Identity = 42/84 (50.00%), Postives = 52/84 (61.90%), Query Frame = 0 

Query: 112 LLTLSVLCDNDAVVSVGRAPLQKDDRSVGRVPLHRRINKRWLYWACPTQRNEVMCLQVAK 171
           L TLSVL DNDAVVS G     KDD +  R PLHRR +KRWLYWACPT R  VM ++   
Sbjct: 540 LSTLSVLRDNDAVVSAGGPHYDKDDGNAVRAPLHRRTSKRWLYWACPTPRRSVMLVKTFD 599

Query: 172 SIISGLHFNISKFITLKNPAESTD 196
            ++  +   +S   TL   AES++
Sbjct: 600 VLVMPVEIELSVPDTLPTSAESSE 623

[Close]
BLAST of MELO3C029027 vs. NCBI nr
Match: TYJ98800.1 (uncharacterized protein E5676_scaffold1625G00140 [Cucumis melo var. makuwa])

HSP 1 Score: 84.7 bits (208), Expect = 1.0e-12
Identity = 42/84 (50.00%), Postives = 52/84 (61.90%), Query Frame = 0 

Query: 112 LLTLSVLCDNDAVVSVGRAPLQKDDRSVGRVPLHRRINKRWLYWACPTQRNEVMCLQVAK 171
           L TLSVL DNDAVVS G     KDD +  R PLHRR +KRWLYWACPT R  VM ++   
Sbjct: 126 LSTLSVLRDNDAVVSAGGPHYDKDDGNAVRAPLHRRTSKRWLYWACPTPRRSVMLVKTFD 185

Query: 172 SIISGLHFNISKFITLKNPAESTD 196
            ++  +   +S   TL   AES++
Sbjct: 186 VLVMPVEIELSVPDTLPTSAESSE 209

[Close]
BLAST of MELO3C029027 vs. ExPASy TrEMBL
Match: A0A5D3BTJ5 (RVT_1 domain-containing protein/zf-CCHC domain-containing protein/RVP_2 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold145G00460 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 3.0e-26
Identity = 70/137 (51.09%), Postives = 82/137 (59.85%), Query Frame = 0 

Query: 32  GVVVYAVVGVVLFRGMSEIIHRESNLYVLRFLILDFGCLTCQEEIGQISSMSFELRFHNG 91
           GVVVY +VGVVLFRGMSEIIH+ES+L+VL                               
Sbjct: 718 GVVVYVIVGVVLFRGMSEIIHKESDLHVL------------------------------- 777

Query: 92  IHMLAQPEARGYHVYTGYVLLLTLSVLCDNDAVVSVGRAPLQKDDRSVGRVPLHRRINKR 151
                    RGY V+T Y+ LLTLSVL DN+ ++SV R PL KDD S GR PLHRR +KR
Sbjct: 778 ---------RGYRVHTSYISLLTLSVLRDNNVIMSVERVPLVKDDGSAGRTPLHRRTSKR 814

Query: 152 WLYWACPTQRNEVMCLQ 169
           WLYWAC TQRNEVM ++
Sbjct: 838 WLYWACSTQRNEVMLVK 814

[Close]
BLAST of MELO3C029027 vs. ExPASy TrEMBL
Match: A0A5A7TCY8 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold128G003250 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 1.3e-24
Identity = 70/137 (51.09%), Postives = 79/137 (57.66%), Query Frame = 0 

Query: 32  GVVVYAVVGVVLFRGMSEIIHRESNLYVLRFLILDFGCLTCQEEIGQISSMSFELRFHNG 91
           GVVVY +VGVVLFRGMSEIIH+ES+L+VLR                              
Sbjct: 738 GVVVYVIVGVVLFRGMSEIIHKESDLHVLR------------------------------ 797

Query: 92  IHMLAQPEARGYHVYTGYVLLLTLSVLCDNDAVVSVGRAPLQKDDRSVGRVPLHRRINKR 151
                           GY+ LLTLSVL DN+ VVSV R PL KDD S GR PLHRR +KR
Sbjct: 798 --------------PRGYISLLTLSVLRDNNVVVSVERVPLVKDDGSAGRTPLHRRTSKR 830

Query: 152 WLYWACPTQRNEVMCLQ 169
           WLYWACPTQRNEVM ++
Sbjct: 858 WLYWACPTQRNEVMLVK 830

[Close]
BLAST of MELO3C029027 vs. ExPASy TrEMBL
Match: A0A5A7VGQ5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold638G00090 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 5.0e-13
Identity = 42/84 (50.00%), Postives = 52/84 (61.90%), Query Frame = 0 

Query: 112 LLTLSVLCDNDAVVSVGRAPLQKDDRSVGRVPLHRRINKRWLYWACPTQRNEVMCLQVAK 171
           L TLSVL DNDAVVS G     KDD +  R PLHRR +KRWLYWACPT R  VM ++   
Sbjct: 540 LSTLSVLRDNDAVVSAGGPHYDKDDGNAVRAPLHRRTSKRWLYWACPTPRRSVMLVKTFD 599

Query: 172 SIISGLHFNISKFITLKNPAESTD 196
            ++  +   +S   TL   AES++
Sbjct: 600 VLVMPVEIELSVPDTLPTSAESSE 623

[Close]
BLAST of MELO3C029027 vs. ExPASy TrEMBL
Match: A0A5D3BG85 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1625G00140 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 5.0e-13
Identity = 42/84 (50.00%), Postives = 52/84 (61.90%), Query Frame = 0 

Query: 112 LLTLSVLCDNDAVVSVGRAPLQKDDRSVGRVPLHRRINKRWLYWACPTQRNEVMCLQVAK 171
           L TLSVL DNDAVVS G     KDD +  R PLHRR +KRWLYWACPT R  VM ++   
Sbjct: 126 LSTLSVLRDNDAVVSAGGPHYDKDDGNAVRAPLHRRTSKRWLYWACPTPRRSVMLVKTFD 185

Query: 172 SIISGLHFNISKFITLKNPAESTD 196
            ++  +   +S   TL   AES++
Sbjct: 186 VLVMPVEIELSVPDTLPTSAESSE 209

The following BLAST results are available for this feature:
BLAST of MELO3C029027 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK02787.16.2e-2651.09RVT_1 domain-containing protein/zf-CCHC domain-containing protein/RVP_2 domain-c... [more]
KAA0041324.12.6e-2451.09DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa][more]
KAA0065516.11.0e-1250.00uncharacterized protein E6C27_scaffold638G00090 [Cucumis melo var. makuwa][more]
TYJ98800.11.0e-1250.00uncharacterized protein E5676_scaffold1625G00140 [Cucumis melo var. makuwa][more]
BLAST of MELO3C029027 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C029027 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3BTJ53.0e-2651.09RVT_1 domain-containing protein/zf-CCHC domain-containing protein/RVP_2 domain-c... [more]
A0A5A7TCY81.3e-2451.09DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G... [more]
A0A5A7VGQ55.0e-1350.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3BG855.0e-1350.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of MELO3C029027 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C029027.1MELO3C029027.1mRNA