MELO3C029026 (gene) Melon (DHL92) v4

Overview
NameMELO3C029026
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionCACTA en-spm transposon protein
Locationchr01: 15166371 .. 15167943 (+)
RNA-Seq ExpressionMELO3C029026
SyntenyMELO3C029026
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TTCAGTTTTGTTTTCCATAGAACTGAAAACGAAAGAGAAAGGGAGAAGAGAGAAACGAAGATTCCTCGTCGTCTGTAGCTCGCCGCCGTCCGTTCCGTCGTCATTGTCGTCCCTCGTCATTTCGCCGTCGTCTGCCACCTTAGGTAAGTTTAAATATAAAGTTTGTTTAGTTTAAATATAAGTTTTAGGATTTTTTTTTTTTTTAAGAAAATTGTTTTAGGATATTGTTTTGAAATAGATTTTTGTTTGTTAAATGTATTTTTGTATAGAATGTGTGTAATTTGTGGTTGAATTGAAATTTGAAGGGTTTAGGGTTTAGGATTTATAGTTAAATTGAAAATTGAATTTAGGGGTGGAGGGGGGGTTTAGTTTGTTGGTGCGGGTTCAACATACTAATGATTGTGGATTAAATTATGAATGATATTGAGTTTTTGGTGGTATTGAAACATCAAGTTTTTCTGCTTAAACGTTTACCCCAAGTCTTTTGAGACTATGAATAACGATTCTTTCTTGAGTCATTAGAAAAGTTGTTGTATTATGGATGCAATATACACTTCTTTTGTACATTTGGAACATTTTGTTATTATTGTTAACTATTACATAATTGAGTTCTATGATTGACAAACCTAGGGATGTAGGATTTGATCTTGACCCCTTACCATTCCCTGTTAAGCACCACTTACCTTATCAAACTAAGCAACACACGGTCTAATCAAAGCCATGAAAATTGGAGCAAATGAAGTTGTTCTTTTAACGTTCTGCCTTCAATTTGCTATGGAGTACGTGTGAGGTTCTCATTTTTTCTCTTTTGCAGTAATAAACAAGTTGTTAGCTCATCGATGGATTCAATTAAGACATTGGCTGCATTTCCACAGGGGATGGTAAATATATAATATTAATTGCTATTATTTATCTGCTCTATATGGTTAACTCATCCTCTATGTTATTGTTAGGGTGTTGATATAATATTAACTTTACCTTCTCTTCCAACTCAAGCTTTTGGGTCAATAACGTCGTTTACTTTCCATTTAACATTAATTTCTACTTAATGGGTTTTTCTTTCAAATTTCAAGCACATAAGTGAGAGGCAAGGGGTAGAGTATTGATCCATCATTTTAAGCTTTTGTGTCAATCGATGATTTAAGAGTCACAATAAGTCTTTTTGCAAAACTAACTACAATTTTTTCCGGTAGGAAATCATCATCCCATCGAATATAACAGAACCAACACACCTAGAGATTGTAGCTTCAACATGTTCATCTCTGGTATTGTAGCAGGTACTATGACTTTATGATATTTATAGCACTTAATACTTGCTGAGCTACTGTTCTTAAGAAAATTACTCTAATGTCCAATCATGTTCGTTTTTGCTATAGTTTATGTTTATTCATTGTTTCTTTTTAACATCATTACTTAGAAGAAGAGCCTCTCATCTTGTAGTTTACTTGATAGTAATTTCTGTTGATTGAGATTAAAATTTCTCAAGGAAGAGTTCGAGTCATGGCATTGGTAGTGAAGCTATTTTTAGTTTCTAGCTCTGTGGCATCGACAGCATACAATGAAAATTTACTAA

mRNA sequence

TTCAGTTTTGTTTTCCATAGAACTGAAAACGAAAGAGAAAGGGAGAAGAGAGAAACGAAGATTCCTCGTCGTCTGTAGCTCGCCGCCGTCCGTTCCGTCGTCATTGTCGTCCCTCGTCATTTCGCCGTCGTCTGCCACCTTAGCTCTGTGGCATCGACAGCATACAATGAAAATTTACTAA

Coding sequence (CDS)

TCAGTTTTGTTTTCCATAGAACTGAAAACGAAAGAGAAAGGGAGAAGAGAGAAACGAAGATTCCTCGTCGTCTGTAGCTCGCCGCCGTCCGTTCCGTCGTCATTGTCGTCCCTCGTCATTTCGCCGTCGTCTGCCACCTTAGCTCTGTGGCATCGACAGCATACAATGAAAATTTACTAA

Protein sequence

SVLFSIELKTKEKGRREKRRFLVVCSSPPSVPSSLSSLVISPSSATLALWHRQHTMKIY
Homology
[Close]
BLAST of MELO3C029026 vs. NCBI nr
Match: KAA0033533.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYJ95656.1 CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 54.3 bits (129), Expect = 4.1e-04
Identity = 29/49 (59.18%), Postives = 33/49 (67.35%), Query Frame = 0 

Query: 1  SVLFSIELKTKEKGRREKRRFLVVCSSPPSVPSSLSSLVISPSSATLAL 50
          SVL+  E K K KGRRE  R   VCSS PS+PSSL SL + P SATL +
Sbjct: 30 SVLYFTEPKPKGKGRRENHRGFAVCSSSPSIPSSLPSLAVPPPSATLVM 78

[Close]
BLAST of MELO3C029026 vs. NCBI nr
Match: TYK11751.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 53.1 bits (126), Expect = 9.2e-04
Identity = 31/49 (63.27%), Postives = 34/49 (69.39%), Query Frame = 0 

Query: 1  SVLFSIELKTKEKGRREKRRFLVVCSSPPSVPSSLSSLVISPSSATLAL 50
          SVL+  ELK K KGRRE RR L V SSPPS+ SS  SL I P SATL +
Sbjct: 11 SVLYFTELKLKGKGRRENRRGLAVRSSPPSILSSSPSLTIPPPSATLVI 59

[Close]
BLAST of MELO3C029026 vs. ExPASy TrEMBL
Match: A0A5A7SSV3 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold104G00850 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.0e-04
Identity = 29/49 (59.18%), Postives = 33/49 (67.35%), Query Frame = 0 

Query: 1  SVLFSIELKTKEKGRREKRRFLVVCSSPPSVPSSLSSLVISPSSATLAL 50
          SVL+  E K K KGRRE  R   VCSS PS+PSSL SL + P SATL +
Sbjct: 30 SVLYFTEPKPKGKGRRENHRGFAVCSSSPSIPSSLPSLAVPPPSATLVM 78

[Close]
BLAST of MELO3C029026 vs. ExPASy TrEMBL
Match: A0A5D3CIU3 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold304G00700 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 4.5e-04
Identity = 31/49 (63.27%), Postives = 34/49 (69.39%), Query Frame = 0 

Query: 1  SVLFSIELKTKEKGRREKRRFLVVCSSPPSVPSSLSSLVISPSSATLAL 50
          SVL+  ELK K KGRRE RR L V SSPPS+ SS  SL I P SATL +
Sbjct: 11 SVLYFTELKLKGKGRRENRRGLAVRSSPPSILSSSPSLTIPPPSATLVI 59

[Close]
BLAST of MELO3C029026 vs. ExPASy TrEMBL
Match: A0A5A7U876 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2679G00080 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 5.8e-04
Identity = 28/42 (66.67%), Postives = 31/42 (73.81%), Query Frame = 0 

Query: 1  SVLFSIELKTKEKGRREKRRFLVVCSSPPSVPSSLSSLVISP 43
          SVL+  ELK K KGRRE RR   V SSPPS+PSSLSSL + P
Sbjct: 22 SVLYFTELKPKGKGRRENRRGFAVRSSPPSIPSSLSSLAVIP 63

[Close]
BLAST of MELO3C029026 vs. ExPASy TrEMBL
Match: A0A5D3CT09 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold45G00870 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 5.8e-04
Identity = 29/43 (67.44%), Postives = 32/43 (74.42%), Query Frame = 0 

Query: 7   ELKTKEKGRREKRRFLVVCSSPPSVPSSLSSLVISPSSATLAL 50
           +LK K KGRREKRR   VCSSPPSVPSSL SL +   SATL +
Sbjct: 67  KLKLKGKGRREKRRGFSVCSSPPSVPSSLPSLTVPLLSATLVM 109

[Close]
BLAST of MELO3C029026 vs. ExPASy TrEMBL
Match: A0A5A7UL05 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold131G001630 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 5.8e-04
Identity = 29/43 (67.44%), Postives = 32/43 (74.42%), Query Frame = 0 

Query: 7   ELKTKEKGRREKRRFLVVCSSPPSVPSSLSSLVISPSSATLAL 50
           +LK K KGRREKRR   VCSSPPSVPSSL SL +   SATL +
Sbjct: 67  KLKLKGKGRREKRRGFSVCSSPPSVPSSLPSLTVPLLSATLVM 109

The following BLAST results are available for this feature:
BLAST of MELO3C029026 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0033533.14.1e-0459.18CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYJ95656.1 CACTA en-... [more]
TYK11751.19.2e-0463.27CACTA en-spm transposon protein [Cucumis melo var. makuwa][more]
BLAST of MELO3C029026 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C029026 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7SSV32.0e-0459.18CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
A0A5D3CIU34.5e-0463.27CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
A0A5A7U8765.8e-0466.67CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
A0A5D3CT095.8e-0467.44CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
A0A5A7UL055.8e-0467.44CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... [more]
BLAST of MELO3C029026 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C029026.1MELO3C029026.1mRNA