MELO3C029019.jh1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO3C029019.jh1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	GPI-anchored protein LLG1-like
Location	chr01: 14724628 .. 14725035 (+)
RNA-Seq Expression	MELO3C029019.jh1
Synteny	MELO3C029019.jh1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

GCTTGCCCTATTAGCTTTGAATTTTTGAACTACACAATCATCACAAGCAAATGCAAAGGGCCTCAATATTCTCCAAAGCTGTGTTGTTCAGCTCTAACAGAACTTGTTTGCCCTTATGTTGATGCTTTGAATGACATGACAACTGATTGTGCTTCAACCATCTTTAGCTACATTAACCTCTATGGAAAGTATCCACCTGGCCTTTTCTCGAGCATATGTCGCGAAGGAGTCGAAGGTCTTGCATGCCCTCCATTACCGCCTCCTTCCAACTCGAACTCAACTTCTCTCTTAAAGCGTTCATCGCCTTCGAACGTTAATGCCTCTGGACTTCTACTTTTGCTTTTGTCGCTGTTGTGACCCAGGTTTTGTGGTTGTTTTAATTTATAATCCAACAAAAGACTCAATTCT

mRNA sequence

GCTTGCCCTATTAGCTTTGAATTTTTGAACTACACAATCATCACAAGCAAATGCAAAGGGCCTCAATATTCTCCAAAGCTGTGTTGTTCAGCTCTAACAGAACTTGTTTGCCCTTATGTTGATGCTTTGAATGACATGACAACTGATTGTGCTTCAACCATCTTTAGCTACATTAACCTCTATGGAAAGTATCCACCTGGCCTTTTCTCGAGCATATGTCGCGAAGGAGTCGAAGGTCTTGCATGCCCTCCATTACCGCCTCCTTCCAACTCGAACTCAACTTCTCTCTTAAAGCGTTCATCGCCTTCGAACGTTAATGCCTCTGGACTTCTACTTTTGCTTTTGTCGCTGTTGTGACCCAGGTTTTGTGGTTGTTTTAATTTATAATCCAACAAAAGACTCAATTCT

Coding sequence (CDS)

ATGACAACTGATTGTGCTTCAACCATCTTTAGCTACATTAACCTCTATGGAAAGTATCCACCTGGCCTTTTCTCGAGCATATGTCGCGAAGGAGTCGAAGGTCTTGCATGCCCTCCATTACCGCCTCCTTCCAACTCGAACTCAACTTCTCTCTTAAAGCGTTCATCGCCTTCGAACGTTAATGCCTCTGGACTTCTACTTTTGCTTTTGTCGCTGTTGTGA

Protein sequence

MTTDCASTIFSYINLYGKYPPGLFSSICREGVEGLACPPLPPPSNSNSTSLLKRSSPSNVNASGLLLLLLSLL

Homology

[Close]

BLAST of MELO3C029019.jh1 vs. NCBI nr
Match: XP_031745126.1 (GPI-anchored protein LLG1-like [Cucumis sativus] >KGN44099.1 hypothetical protein Csa_015962 [Cucumis sativus])

HSP 1 Score: 130 bits (326), Expect = 2.10e-36
Identity = 65/72 (90.28%), Postives = 67/72 (93.06%), Query Frame = 0


Query: 1   MTTDCASTIFSYINLYGKYPPGLFSSICREGVEGLACPPLPPPSNSNSTSLLKRSSPSNV 60
           MTTDCASTIFSYIN+YGKYPPGLFSSICREG EGLACPP PPPS+S S SLLKRSSPS V
Sbjct: 97  MTTDCASTIFSYINIYGKYPPGLFSSICREGAEGLACPPCPPPSHSKSASLLKRSSPSIV 156

Query: 61  NASGLLLLLLSL 72
           NASGLLLLLLSL
Sbjct: 157 NASGLLLLLLSL 168

[Close]

BLAST of MELO3C029019.jh1 vs. NCBI nr
Match: XP_023525702.1 (GPI-anchored protein LLG1-like isoform X4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 102 bits (254), Expect = 1.24e-25
Identity = 51/68 (75.00%), Postives = 58/68 (85.29%), Query Frame = 0


Query: 1   MTTDCASTIFSYINLYGKYPPGLFSSICREGVEGLACPPLPPPSNSNSTSLLKRSSPSNV 60
           MTT CAST+FSYINL+GKYPPGLFSSICREG +GLACP LP PS+ NST L KR SP+ +
Sbjct: 72  MTTLCASTMFSYINLHGKYPPGLFSSICREGDQGLACPQLPAPSHPNSTPLSKRPSPAII 131

Query: 61  NASGLLLL 68
            ASGL+LL
Sbjct: 132 VASGLVLL 139

[Close]

BLAST of MELO3C029019.jh1 vs. NCBI nr
Match: XP_023525701.1 (GPI-anchored protein LLG1-like isoform X3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 102 bits (254), Expect = 2.05e-25
Identity = 51/68 (75.00%), Postives = 58/68 (85.29%), Query Frame = 0


Query: 1   MTTDCASTIFSYINLYGKYPPGLFSSICREGVEGLACPPLPPPSNSNSTSLLKRSSPSNV 60
           MTT CAST+FSYINL+GKYPPGLFSSICREG +GLACP LP PS+ NST L KR SP+ +
Sbjct: 91  MTTLCASTMFSYINLHGKYPPGLFSSICREGDQGLACPQLPAPSHPNSTPLSKRPSPAII 150

Query: 61  NASGLLLL 68
            ASGL+LL
Sbjct: 151 VASGLVLL 158

[Close]

BLAST of MELO3C029019.jh1 vs. NCBI nr
Match: XP_023525700.1 (GPI-anchored protein LLG1-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 102 bits (254), Expect = 2.16e-25
Identity = 51/68 (75.00%), Postives = 58/68 (85.29%), Query Frame = 0


Query: 1   MTTDCASTIFSYINLYGKYPPGLFSSICREGVEGLACPPLPPPSNSNSTSLLKRSSPSNV 60
           MTT CAST+FSYINL+GKYPPGLFSSICREG +GLACP LP PS+ NST L KR SP+ +
Sbjct: 93  MTTLCASTMFSYINLHGKYPPGLFSSICREGDQGLACPQLPAPSHPNSTPLSKRPSPAII 152

Query: 61  NASGLLLL 68
            ASGL+LL
Sbjct: 153 VASGLVLL 160

[Close]

BLAST of MELO3C029019.jh1 vs. NCBI nr
Match: XP_023525699.1 (GPI-anchored protein LLG1-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 102 bits (254), Expect = 2.39e-25
Identity = 51/68 (75.00%), Postives = 58/68 (85.29%), Query Frame = 0


Query: 1   MTTDCASTIFSYINLYGKYPPGLFSSICREGVEGLACPPLPPPSNSNSTSLLKRSSPSNV 60
           MTT CAST+FSYINL+GKYPPGLFSSICREG +GLACP LP PS+ NST L KR SP+ +
Sbjct: 97  MTTLCASTMFSYINLHGKYPPGLFSSICREGDQGLACPQLPAPSHPNSTPLSKRPSPAII 156

Query: 61  NASGLLLL 68
            ASGL+LL
Sbjct: 157 VASGLVLL 164

[Close]

BLAST of MELO3C029019.jh1 vs. ExPASy Swiss-Prot
Match: Q9M0I0 (GPI-anchored protein LLG3 OS=Arabidopsis thaliana OX=3702 GN=LLG3 PE=2 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 3.1e-12
Identity = 29/47 (61.70%), Postives = 41/47 (87.23%), Query Frame = 0


Query: 3   TDCASTIFSYINLYGKYPPGLFSSICREGVEGLACPPLPPPSNSNST 50
           TDCAST+FSYINLYG+YPPG+F+++C+EG EGL C  + P S+S+++
Sbjct: 94  TDCASTMFSYINLYGRYPPGIFANMCKEGKEGLDCTDVTPTSSSHAS 140

[Close]

BLAST of MELO3C029019.jh1 vs. ExPASy Swiss-Prot
Match: Q9FKT1 (GPI-anchored protein LLG1 OS=Arabidopsis thaliana OX=3702 GN=LLG1 PE=1 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.2e-11
Identity = 36/75 (48.00%), Postives = 51/75 (68.00%), Query Frame = 0


Query: 1   MTTDCASTIFSYINLYGKYPPGLFSSICREGVEGLACP---PLPPPSNSNSTSLLKRSSP 60
           +++DCA+T+FSYINLYGKYPPGLF++ C+EG EGL CP    LPP +++   +    SS 
Sbjct: 93  LSSDCATTMFSYINLYGKYPPGLFANQCKEGKEGLECPAGSQLPPETSAEVNAATTSSSR 152

Query: 61  SNVNASGLLLLLLSL 73
             +  S  LL+ + L
Sbjct: 153 LWLTVSAALLVFVKL 167

[Close]

BLAST of MELO3C029019.jh1 vs. ExPASy Swiss-Prot
Match: Q6NLF4 (GPI-anchored protein LLG2 OS=Arabidopsis thaliana OX=3702 GN=LLG2 PE=1 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 1.7e-10
Identity = 31/69 (44.93%), Postives = 49/69 (71.01%), Query Frame = 0


Query: 4   DCASTIFSYINLYGKYPPGLFSSICREGVEGLACPPLPPPSNSNSTSLLKRSSPSNVNAS 63
           DCAST+FSYINLYG+YPPG+F+++C+EG EGL C  +   +++ S S+ + S+ +++   
Sbjct: 91  DCASTMFSYINLYGRYPPGIFANMCKEGKEGLDCTDVTQSASATSDSIPRASTTASLAVL 150

Query: 64  GLLLLLLSL 73
              L+L  L
Sbjct: 151 STFLVLCLL 159

[Close]

BLAST of MELO3C029019.jh1 vs. ExPASy Swiss-Prot
Match: B3GS44 (GPI-anchored protein LORELEI OS=Arabidopsis thaliana OX=3702 GN=LRE PE=1 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.9e-09
Identity = 29/57 (50.88%), Postives = 39/57 (68.42%), Query Frame = 0


Query: 1   MTTDCASTIFSYINLYGKYPPGLFSSICREGVEGLACPPLPPPSNSNSTSLLKRSSP 58
           M +DCA T+FSY+N+YG YP GLF++ CRE  +GL C PLPP  + N  +    S+P
Sbjct: 90  MNSDCAQTMFSYMNIYGNYPTGLFANECRERKDGLVC-PLPPLYSHNLNASTADSTP 145

[Close]

BLAST of MELO3C029019.jh1 vs. ExPASy TrEMBL
Match: A0A0A0K589 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G186180 PE=4 SV=1)

HSP 1 Score: 130 bits (326), Expect = 1.02e-36
Identity = 65/72 (90.28%), Postives = 67/72 (93.06%), Query Frame = 0


Query: 1   MTTDCASTIFSYINLYGKYPPGLFSSICREGVEGLACPPLPPPSNSNSTSLLKRSSPSNV 60
           MTTDCASTIFSYIN+YGKYPPGLFSSICREG EGLACPP PPPS+S S SLLKRSSPS V
Sbjct: 97  MTTDCASTIFSYINIYGKYPPGLFSSICREGAEGLACPPCPPPSHSKSASLLKRSSPSIV 156

Query: 61  NASGLLLLLLSL 72
           NASGLLLLLLSL
Sbjct: 157 NASGLLLLLLSL 168

[Close]

BLAST of MELO3C029019.jh1 vs. ExPASy TrEMBL
Match: A0A6J1IX37 (GPI-anchored protein LLG1-like isoform X4 OS=Cucurbita maxima OX=3661 GN=LOC111480693 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 5.29e-25
Identity = 50/68 (73.53%), Postives = 57/68 (83.82%), Query Frame = 0


Query: 1   MTTDCASTIFSYINLYGKYPPGLFSSICREGVEGLACPPLPPPSNSNSTSLLKRSSPSNV 60
           MTT CAST+FSYINL+GKYPPGLFSSICREG +GLACP LP PS+ NST L K  SP+ +
Sbjct: 72  MTTVCASTMFSYINLHGKYPPGLFSSICREGDQGLACPQLPAPSHPNSTPLSKCRSPAII 131

Query: 61  NASGLLLL 68
            ASGL+LL
Sbjct: 132 VASGLVLL 139

[Close]

BLAST of MELO3C029019.jh1 vs. ExPASy TrEMBL
Match: A0A6J1J022 (GPI-anchored protein LLG1-like isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111480693 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 8.75e-25
Identity = 50/68 (73.53%), Postives = 57/68 (83.82%), Query Frame = 0


Query: 1   MTTDCASTIFSYINLYGKYPPGLFSSICREGVEGLACPPLPPPSNSNSTSLLKRSSPSNV 60
           MTT CAST+FSYINL+GKYPPGLFSSICREG +GLACP LP PS+ NST L K  SP+ +
Sbjct: 91  MTTVCASTMFSYINLHGKYPPGLFSSICREGDQGLACPQLPAPSHPNSTPLSKCRSPAII 150

Query: 61  NASGLLLL 68
            ASGL+LL
Sbjct: 151 VASGLVLL 158

[Close]

BLAST of MELO3C029019.jh1 vs. ExPASy TrEMBL
Match: A0A6J1J2D9 (GPI-anchored protein LLG1-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111480693 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 8.98e-25
Identity = 50/68 (73.53%), Postives = 57/68 (83.82%), Query Frame = 0


Query: 1   MTTDCASTIFSYINLYGKYPPGLFSSICREGVEGLACPPLPPPSNSNSTSLLKRSSPSNV 60
           MTT CAST+FSYINL+GKYPPGLFSSICREG +GLACP LP PS+ NST L K  SP+ +
Sbjct: 92  MTTVCASTMFSYINLHGKYPPGLFSSICREGDQGLACPQLPAPSHPNSTPLSKCRSPAII 151

Query: 61  NASGLLLL 68
            ASGL+LL
Sbjct: 152 VASGLVLL 159

[Close]

BLAST of MELO3C029019.jh1 vs. ExPASy TrEMBL
Match: A0A6J1J2M1 (GPI-anchored protein LLG1-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111480693 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 1.02e-24
Identity = 50/68 (73.53%), Postives = 57/68 (83.82%), Query Frame = 0


Query: 1   MTTDCASTIFSYINLYGKYPPGLFSSICREGVEGLACPPLPPPSNSNSTSLLKRSSPSNV 60
           MTT CAST+FSYINL+GKYPPGLFSSICREG +GLACP LP PS+ NST L K  SP+ +
Sbjct: 97  MTTVCASTMFSYINLHGKYPPGLFSSICREGDQGLACPQLPAPSHPNSTPLSKCRSPAII 156

Query: 61  NASGLLLL 68
            ASGL+LL
Sbjct: 157 VASGLVLL 164

[Close]

BLAST of MELO3C029019.jh1 vs. TAIR 10
Match: AT4G28280.1 (LORELEI-LIKE-GPI ANCHORED PROTEIN 3 )

HSP 1 Score: 72.0 bits (175), Expect = 2.2e-13
Identity = 29/47 (61.70%), Postives = 41/47 (87.23%), Query Frame = 0


Query: 3   TDCASTIFSYINLYGKYPPGLFSSICREGVEGLACPPLPPPSNSNST 50
           TDCAST+FSYINLYG+YPPG+F+++C+EG EGL C  + P S+S+++
Sbjct: 68  TDCASTMFSYINLYGRYPPGIFANMCKEGKEGLDCTDVTPTSSSHAS 114

[Close]

BLAST of MELO3C029019.jh1 vs. TAIR 10
Match: AT4G28280.2 (LORELEI-LIKE-GPI ANCHORED PROTEIN 3 )

HSP 1 Score: 72.0 bits (175), Expect = 2.2e-13
Identity = 29/47 (61.70%), Postives = 41/47 (87.23%), Query Frame = 0


Query: 3   TDCASTIFSYINLYGKYPPGLFSSICREGVEGLACPPLPPPSNSNST 50
           TDCAST+FSYINLYG+YPPG+F+++C+EG EGL C  + P S+S+++
Sbjct: 94  TDCASTMFSYINLYGRYPPGIFANMCKEGKEGLDCTDVTPTSSSHAS 140

[Close]

BLAST of MELO3C029019.jh1 vs. TAIR 10
Match: AT5G56170.1 (LORELEI-LIKE-GPI-ANCHORED PROTEIN 1 )

HSP 1 Score: 70.1 bits (170), Expect = 8.4e-13
Identity = 36/75 (48.00%), Postives = 51/75 (68.00%), Query Frame = 0


Query: 1   MTTDCASTIFSYINLYGKYPPGLFSSICREGVEGLACP---PLPPPSNSNSTSLLKRSSP 60
           +++DCA+T+FSYINLYGKYPPGLF++ C+EG EGL CP    LPP +++   +    SS 
Sbjct: 93  LSSDCATTMFSYINLYGKYPPGLFANQCKEGKEGLECPAGSQLPPETSAEVNAATTSSSR 152

Query: 61  SNVNASGLLLLLLSL 73
             +  S  LL+ + L
Sbjct: 153 LWLTVSAALLVFVKL 167

[Close]

BLAST of MELO3C029019.jh1 vs. TAIR 10
Match: AT2G20700.1 (LORELEI-LIKE-GPI ANCHORED PROTEIN 2 )

HSP 1 Score: 66.2 bits (160), Expect = 1.2e-11
Identity = 31/69 (44.93%), Postives = 49/69 (71.01%), Query Frame = 0


Query: 4   DCASTIFSYINLYGKYPPGLFSSICREGVEGLACPPLPPPSNSNSTSLLKRSSPSNVNAS 63
           DCAST+FSYINLYG+YPPG+F+++C+EG EGL C  +   +++ S S+ + S+ +++   
Sbjct: 91  DCASTMFSYINLYGRYPPGIFANMCKEGKEGLDCTDVTQSASATSDSIPRASTTASLAVL 150

Query: 64  GLLLLLLSL 73
              L+L  L
Sbjct: 151 STFLVLCLL 159

[Close]

BLAST of MELO3C029019.jh1 vs. TAIR 10
Match: AT4G26466.1 (lorelei )

HSP 1 Score: 62.8 bits (151), Expect = 1.3e-10
Identity = 29/57 (50.88%), Postives = 39/57 (68.42%), Query Frame = 0


Query: 1   MTTDCASTIFSYINLYGKYPPGLFSSICREGVEGLACPPLPPPSNSNSTSLLKRSSP 58
           M +DCA T+FSY+N+YG YP GLF++ CRE  +GL C PLPP  + N  +    S+P
Sbjct: 90  MNSDCAQTMFSYMNIYGNYPTGLFANECRERKDGLVC-PLPPLYSHNLNASTADSTP 145

The following BLAST results are available for this feature:

BLAST of MELO3C029019.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031745126.1	2.10e-36	90.28	GPI-anchored protein LLG1-like [Cucumis sativus] >KGN44099.1 hypothetical protei...	[more]
XP_023525702.1	1.24e-25	75.00	GPI-anchored protein LLG1-like isoform X4 [Cucurbita pepo subsp. pepo]	[more]
XP_023525701.1	2.05e-25	75.00	GPI-anchored protein LLG1-like isoform X3 [Cucurbita pepo subsp. pepo]	[more]
XP_023525700.1	2.16e-25	75.00	GPI-anchored protein LLG1-like isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_023525699.1	2.39e-25	75.00	GPI-anchored protein LLG1-like isoform X1 [Cucurbita pepo subsp. pepo]	[more]

BLAST of MELO3C029019.jh1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M0I0	3.1e-12	61.70	GPI-anchored protein LLG3 OS=Arabidopsis thaliana OX=3702 GN=LLG3 PE=2 SV=1	[more]
Q9FKT1	1.2e-11	48.00	GPI-anchored protein LLG1 OS=Arabidopsis thaliana OX=3702 GN=LLG1 PE=1 SV=1	[more]
Q6NLF4	1.7e-10	44.93	GPI-anchored protein LLG2 OS=Arabidopsis thaliana OX=3702 GN=LLG2 PE=1 SV=1	[more]
B3GS44	1.9e-09	50.88	GPI-anchored protein LORELEI OS=Arabidopsis thaliana OX=3702 GN=LRE PE=1 SV=1	[more]

BLAST of MELO3C029019.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K589	1.02e-36	90.28	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G186180 PE=4 SV=1	[more]
A0A6J1IX37	5.29e-25	73.53	GPI-anchored protein LLG1-like isoform X4 OS=Cucurbita maxima OX=3661 GN=LOC1114...	[more]
A0A6J1J022	8.75e-25	73.53	GPI-anchored protein LLG1-like isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC1114...	[more]
A0A6J1J2D9	8.98e-25	73.53	GPI-anchored protein LLG1-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC1114...	[more]
A0A6J1J2M1	1.02e-24	73.53	GPI-anchored protein LLG1-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC1114...	[more]

BLAST of MELO3C029019.jh1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G28280.1	2.2e-13	61.70	LORELEI-LIKE-GPI ANCHORED PROTEIN 3	[more]
AT4G28280.2	2.2e-13	61.70	LORELEI-LIKE-GPI ANCHORED PROTEIN 3	[more]
AT5G56170.1	8.4e-13	48.00	LORELEI-LIKE-GPI-ANCHORED PROTEIN 1	[more]
AT2G20700.1	1.2e-11	44.93	LORELEI-LIKE-GPI ANCHORED PROTEIN 2	[more]
AT4G26466.1	1.3e-10	50.88	lorelei	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..58
None	No IPR available	PANTHER	PTHR31533:SF23	GPI-ANCHORED PROTEIN LLG1	coord: 2..70
IPR039307	GPI-anchored protein LORELEI-like	PANTHER	PTHR31533	GPI-ANCHORED PROTEIN LLG1-RELATED-RELATED	coord: 2..70

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C029019.jh1.t1	MELO3C029019.jh1.t1	mRNA