MELO3C028976 (gene) Melon (DHL92) v4

Overview
NameMELO3C028976
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionThionin-like protein 2
Locationchr01: 34106788 .. 34108913 (+)
RNA-Seq ExpressionMELO3C028976
SyntenyMELO3C028976
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTCAGTACTTGGCAGTCGAAGACTTGTGGAATATTTACCAGCATTAGGTCAAAATTGGTTTTGAACCCACTTTCTTTTGGTTGAGTGTGAAGGCTTTTTGTTAATCGATGCATGTCGCAGAAGTTTCTATTATAATAATATTTAGCCTGTAGTCATGTAATTTATTGAATTCCAGTTTTTAGGGCATTACAATATTTATCTGGTATGAATTTTCATTAGTGTTTAACCTCACGTGGTACAGGTGCATTATCTCTGGAACCTTTGAAGAGATTTCAGCTTTATAAAAAGTAAGTCTTCTATACTTGGGCTTTCTCGGTGTTAAGCATAAAATTTCTTCTCTAAACTGATTCTTTCACTGCCAATTACTTTTAACTTTGATTTTGTTGAAGTAAGAAGGATAAACATTGGCAAATTATATTGCATATTACTCTGTTGTAGTGGTTAGGACTAGGAAAAATTGCAAATTATTGAAGCAATATATATTGAAACAAGAAATATAGTTTCATATACCGGTTAGAAGTGGTTAAACTTCTTGATATTAGTTTAGATGACTTTAAAGATATACTTTCGGGGGGAATAATTGAGATATATCATGAACTAATAGTTGGGTGAAGTAGATTCAATTTATTTCTAGGGTTGAAATTGGTACCTTGTGTTGGCATTACAATATTATATCAAAAGAATATAAGTTAATGATTTTCTATAAACACCCAATAATTTGTTGCTATTTCTTCTTCTACCAAACAAATGAATTGAATTTTTCATAAAATTAAATAAATAAATAAAATATTTTCTTCTCTCTTTAAATTATAGTTTAGCTTTTAAAAATATGGTAAAACAACATATTTGCTTTCAAAAAGGGCATGATGGTTGAATCTATATAAATAGTTAAAAATTAAAAATTAGACATGGCAAGTGTCCCATGGTTGAGTTTATAATTTTTTAATAAATATATTGTATAATTTTGACTTTATCCTTCATAAGTTTGAAAAAAAAAAAGTATGTAAAGTAAAATTTTTAAATACTCATTTGATTAAAACTATATTATAGGATTATACATAGCAACATTTGTCAAAACTCATTGTTAAGCAAAGGTAAAGCTTACTCAATGATAAAGATGCACTTTAGCTAATCTAAACTAAGTTAATTTATAATTAAAAAGTATATATGTGCAAGGAATGTGGTAATACAAGGAGTAAGATTGAATAGGAGTACACAAAGAATAATAGCTCCCACATGAGGAACTTCTTGATTTTTCATTAAATCATGTGTTATGTTGTTGTTTTATCCTTGCATGTTTTAGTATAAAAACTATTTATGTGAGTTAATTTCTCGACATAAAAAGGAGAGGTTAAGTTAATATATCTAATTGATTTGTACTATCCAATTTTTTGATCATTTCTTTTTAATTAAAGGTTTATTTTGAACTATAAAAATAATAAATATATGATAGTTAAATTAATTTTTTAAGATTTAAATATATTTAATGTTAAGTCTATCTATTTTGGATGTTTGAAACAATGAATTATCTTCTCTAAAAAGTAGTTGCTTTATACTTGATCATTATTCTTTAAACTAATATCATTGTAATTATTGGTAAATCAACTTGTAAATTGGTTTTCAACACCACACATGACAAATTATAGAAAATGTGGGTTGTTAAGCCCTTATAGGAAAAATGGGACCTAACAATACTAATGACCTAACAATACTACTAATGAACTAACAATACTAAATATACAAATCTTAACTAACTACTATATGTGTTTGATTTAGGGTTTATAAAATAAGATACCAAAGTGCTTGTAAGAACTCACAACCTCAAAACCATACATATTGATAACTCTACATTCAAACTTTAGCAAAAATGAAATCGGTTATTCTAATTTTCATTTTCTGCTTGATTGCTGGAAGATCCATTGCTGTAATAGATACAGCAAAGTGCTATGTGAAGTGCATGGCAAAATGTGCTATCATACCTATCCCCATCGTTGTTGGCGCTTGTGCTCCAAGATGCATGGTTGACTGCTTTCCCACTTCTTCCCCTTTGGATTCGAGTAGTTACTTTTGTAAGGTTGGCTGCGTCACCTCTCGTTGCACCAAACTCACCACCAAGGAAGACCCCG

mRNA sequence

TTCAGTACTTGGCAGTCGAAGACTTGTGGAATATTTACCAGCATTAGGTCAAAATTGGTTTTGAACCCACTTTCTTTTGGTTGAGTGTGAAGGCTTTTTGTTAATCGATGCATGTCGCAGAAGTTTCTATTATAATAATATTTAGCCTGTAGTCATGTAATTTATTGAATTCCAGTTTTTAGGGCATTACAATATTTATCTGGTATGAATTTTCATTAGTGTTTAACCTCACGTGGTACAGGTGCATTATCTCTGGAACCTTTGAAGAGATTTCAGCTTTATAAAAAATCCATTGCTGTAATAGATACAGCAAAGTGCTATGTGAAGTGCATGGCAAAATGTGCTATCATACCTATCCCCATCGTTGTTGGCGCTTGTGCTCCAAGATGCATGGTTGACTGCTTTCCCACTTCTTCCCCTTTGGATTCGAGTAGTTACTTTTGTAAGGTTGGCTGCGTCACCTCTCGTTGCACCAAACTCACCACCAAGGAAGACCCCG

Coding sequence (CDS)

ATGGCAAAATGTGCTATCATACCTATCCCCATCGTTGTTGGCGCTTGTGCTCCAAGATGCATGGTTGACTGCTTTCCCACTTCTTCCCCTTTGGATTCGAGTAGTTACTTTTGTAAGGTTGGCTGCGTCACCTCTCGTTGCACCAAACTCACCACCAAGGAAGACCCC

Protein sequence

MAKCAIIPIPIVVGACAPRCMVDCFPTSSPLDSSSYFCKVGCVTSRCTKLTTKEDP
Homology
[Close]
BLAST of MELO3C028976 vs. NCBI nr
Match: KAA0037367.1 (thionin-like protein 2 [Cucumis melo var. makuwa] >TYJ97540.1 thionin-like protein 2 [Cucumis melo var. makuwa])

HSP 1 Score: 68.9 bits (167), Expect = 1.5e-08
Identity = 35/60 (58.33%), Postives = 43/60 (71.67%), Query Frame = 0 

Query: 1  MAKCAIIPIPIVVGACAPRCMVDCFP-TSSPLD----SSSYFCKVGCVTSRCTKLTTKED 56
          MA+CAI+PI  VV  CA +CM DC P  SSP+D     + YFCK+GC T RCTKL+TK+D
Sbjct: 32 MAECAILPIIPVVSICAVKCMADCIPVASSPMDLNRMDTHYFCKLGCTTYRCTKLSTKKD 91

[Close]
BLAST of MELO3C028976 vs. NCBI nr
Match: KAG7025781.1 (Thionin-like protein 2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 58.2 bits (139), Expect = 2.7e-05
Identity = 29/58 (50.00%), Postives = 37/58 (63.79%), Query Frame = 0 

Query: 4  CAIIPIPIVVGACAPRCMVDC-FPTSSPLD----SSSYFCKVGCVTSRCTKLTTKEDP 57
          CAI P  + +G C  +C+ DC FP S+P D     + YFCK+GC TS CTK +TK DP
Sbjct: 33 CAITP-GVPIGTCGGKCLADCLFPASAPTDLNHLDTHYFCKLGCATSLCTKFSTKTDP 89

[Close]
BLAST of MELO3C028976 vs. NCBI nr
Match: XP_038899787.1 (thionin-like protein 2 [Benincasa hispida])

HSP 1 Score: 57.8 bits (138), Expect = 3.6e-05
Identity = 31/58 (53.45%), Postives = 38/58 (65.52%), Query Frame = 0 

Query: 4  CAIIPIPIVVGACAPRCMVDC-FPTSSPLD----SSSYFCKVGCVTSRCTKLTTKEDP 57
          CAI P  I +G C  +C+ DC F  SSPLD     + YFCK+GC TS CTK +TK+DP
Sbjct: 33 CAITP-GIPIGTCGAKCLGDCLFIASSPLDFNHLDTHYFCKLGCATSLCTKFSTKKDP 89

[Close]
BLAST of MELO3C028976 vs. NCBI nr
Match: KAG6593441.1 (Thionin-like protein 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 57.8 bits (138), Expect = 3.6e-05
Identity = 29/58 (50.00%), Postives = 37/58 (63.79%), Query Frame = 0 

Query: 4  CAIIPIPIVVGACAPRCMVDC-FPTSSPLD----SSSYFCKVGCVTSRCTKLTTKEDP 57
          CAI P  + +G C  +C+ DC FP S+P D     + YFCK+GC TS CTK +TK DP
Sbjct: 33 CAITP-GVPIGTCGGKCLADCLFPASAPRDLNHLDTHYFCKLGCATSLCTKFSTKTDP 89

[Close]
BLAST of MELO3C028976 vs. NCBI nr
Match: XP_023000407.1 (thionin-like protein 2 [Cucurbita maxima])

HSP 1 Score: 53.9 bits (128), Expect = 5.1e-04
Identity = 28/58 (48.28%), Postives = 36/58 (62.07%), Query Frame = 0 

Query: 4   CAIIPIPIVVGACAPRCMVDC-FPTSSPLD----SSSYFCKVGCVTSRCTKLTTKEDP 57
           CAI P  + +G C  +C+ DC F  S+P D     + YFCK+GC TS CTK +TK DP
Sbjct: 68  CAITP-GVPIGTCGGKCLADCLFLASAPRDLNHLDTHYFCKLGCATSLCTKFSTKTDP 124

[Close]
BLAST of MELO3C028976 vs. ExPASy TrEMBL
Match: A0A5D3BCH5 (Thionin-like protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold85G00550 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 7.5e-09
Identity = 35/60 (58.33%), Postives = 43/60 (71.67%), Query Frame = 0 

Query: 1  MAKCAIIPIPIVVGACAPRCMVDCFP-TSSPLD----SSSYFCKVGCVTSRCTKLTTKED 56
          MA+CAI+PI  VV  CA +CM DC P  SSP+D     + YFCK+GC T RCTKL+TK+D
Sbjct: 32 MAECAILPIIPVVSICAVKCMADCIPVASSPMDLNRMDTHYFCKLGCTTYRCTKLSTKKD 91

[Close]
BLAST of MELO3C028976 vs. ExPASy TrEMBL
Match: A0A0A0KC18 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G446640 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.6e-06
Identity = 32/58 (55.17%), Postives = 39/58 (67.24%), Query Frame = 0 

Query: 4  CAIIPIPIVVGACAPRCMVDC-FPTSSPLD----SSSYFCKVGCVTSRCTKLTTKEDP 57
          CAI P  I VG C  +C+ DC F  SSP+D     + YFCK+GC TSRCTK +TK+DP
Sbjct: 33 CAITP-GIPVGTCGAKCLADCLFIASSPMDLNYMDTHYFCKLGCATSRCTKFSTKKDP 89

[Close]
BLAST of MELO3C028976 vs. ExPASy TrEMBL
Match: A0A6J1KDK0 (thionin-like protein 2 OS=Cucurbita maxima OX=3661 GN=LOC111494667 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 2.5e-04
Identity = 28/58 (48.28%), Postives = 36/58 (62.07%), Query Frame = 0 

Query: 4   CAIIPIPIVVGACAPRCMVDC-FPTSSPLD----SSSYFCKVGCVTSRCTKLTTKEDP 57
           CAI P  + +G C  +C+ DC F  S+P D     + YFCK+GC TS CTK +TK DP
Sbjct: 68  CAITP-GVPIGTCGGKCLADCLFLASAPRDLNHLDTHYFCKLGCATSLCTKFSTKTDP 124

The following BLAST results are available for this feature:
BLAST of MELO3C028976 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0037367.11.5e-0858.33thionin-like protein 2 [Cucumis melo var. makuwa] >TYJ97540.1 thionin-like prote... [more]
KAG7025781.12.7e-0550.00Thionin-like protein 2, partial [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_038899787.13.6e-0553.45thionin-like protein 2 [Benincasa hispida][more]
KAG6593441.13.6e-0550.00Thionin-like protein 2, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_023000407.15.1e-0448.28thionin-like protein 2 [Cucurbita maxima][more]
BLAST of MELO3C028976 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C028976 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3BCH57.5e-0958.33Thionin-like protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold8... [more]
A0A0A0KC181.6e-0655.17Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G446640 PE=4 SV=1[more]
A0A6J1KDK02.5e-0448.28thionin-like protein 2 OS=Cucurbita maxima OX=3661 GN=LOC111494667 PE=4 SV=1[more]
BLAST of MELO3C028976 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePROSITEPS51257PROKAR_LIPOPROTEINcoord: 1..16
score: 5.0

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C028976.1MELO3C028976.1mRNA