MELO3C028975 (gene) Melon (DHL92) v4

Overview
NameMELO3C028975
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionRetrotransposon protein
Locationchr01: 11212520 .. 11213217 (+)
RNA-Seq ExpressionMELO3C028975
SyntenyMELO3C028975
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTAGATGACATCGACAAATTTAAAAGCCACTAAGCATTGGTGGACCACTATTGAGGATGAGGCGTTAGTTGAATGCTTATTACAACTAGTGGAGGAAGGTGGTTGGAGGGCTGATAATGGAACACTCAAACCGGGATATTTGGTATAAGTACAAAAACTAATGAAAGAAAAAATTCCTGGAAGCAACATACAAGTGACTCCAAATCTAGAGTCGAGAGTAAAAATTTTAAAGAAGTAGTACACTGCCATAGCAAAGATGATGGAGTTAGCTTGTACTGGGTTTGGCTAGAATGAGGAACGAAAGTGCATTGAGGTAGAGAAATCCGTGTTCGATGACTGGGTTAAGGTAAGAAGATGAATATAATTCATACTTTCTATAAAAGTAAAATATAATATACTTACATATGTTAACTCCATGTAGGGACACCCCAATGTTCGAGGCTTACTAAATAAACTATTTCCTTACTTCTATGACTTGGAAGTCGTGTTTGGTAGAGATAGGGTTACTAGTGGTAGATGTAAGACATCTGTTGAAATGGGCTCACAGAATGTAGGAGATACTGAGGAAGAGGAAATGGACATTAATCTTGAAGGCTTTGATATTCCAAATCCACATGGACTCAAGCTACCTTCGGGGGAGTACATGTCATCCACTCCAACAAGTATGGCACATGATGCGAAATCATCTAGGCCAAGTA

mRNA sequence

TTAGATGACATCGACAAATTTAAAAGCCACTAAGCATTGGTGGACCACTATTGAGGATGAGGCGTTAGTTGAATGCTTATTACAACTAGTGGAGGAAGGTGGTTGGAGGGCTGATAATGGAACACTCAAACCGGGATATTTGGGACACCCCAATGTTCGAGGCTTACTAAATAAACTATTTCCTTACTTCTATGACTTGGAAGTCGTGTTTGGTAGAGATAGGGTTACTAGTGGTAGATGTAAGACATCTGTTGAAATGGGCTCACAGAATGTAGGAGATACTGAGGAAGAGGAAATGGACATTAATCTTGAAGGCTTTGATATTCCAAATCCACATGGACTCAAGCTACCTTCGGGGGAGTACATGTCATCCACTCCAACAAGTATGGCACATGATGCGAAATCATCTAGGCCAAGTA

Coding sequence (CDS)

ATGACATCGACAAATTTAAAAGCCACTAAGCATTGGTGGACCACTATTGAGGATGAGGCGTTAGTTGAATGCTTATTACAACTAGTGGAGGAAGGTGGTTGGAGGGCTGATAATGGAACACTCAAACCGGGATATTTGGGACACCCCAATGTTCGAGGCTTACTAAATAAACTATTTCCTTACTTCTATGACTTGGAAGTCGTGTTTGGTAGAGATAGGGTTACTAGTGGTAGATGTAAGACATCTGTTGAAATGGGCTCACAGAATGTAGGAGATACTGAGGAAGAGGAAATGGACATTAATCTTGAAGGCTTTGATATTCCAAATCCACATGGACTCAAGCTACCTTCGGGGGAGTACATGTCATCCACTCCAACAAGTATGGCACATGATGCGAAATCATCTAGGCCAAGT

Protein sequence

MTSTNLKATKHWWTTIEDEALVECLLQLVEEGGWRADNGTLKPGYLGHPNVRGLLNKLFPYFYDLEVVFGRDRVTSGRCKTSVEMGSQNVGDTEEEEMDINLEGFDIPNPHGLKLPSGEYMSSTPTSMAHDAKSSRPS
Homology
BLAST of MELO3C028975 vs. NCBI nr
Match: TYK08067.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 239.6 bits (610), Expect = 1.6e-59
Identity = 116/138 (84.06%), Postives = 121/138 (87.68%), Query Frame = 0

Query: 1   MTSTNLKATKHWWTTIEDEALVECLLQLVEEGGWRADNGTLKPGYLGHPNVRGLLNKLFP 60
           MTSTNLKAT+H WTTIEDEALVECLLQL+EEGGWR DNGT K  YLGHPNVR LLNK FP
Sbjct: 306 MTSTNLKATQHRWTTIEDEALVECLLQLMEEGGWRVDNGTFKLRYLGHPNVRSLLNKPFP 365

Query: 61  YFYDLEVVFGRDRVTSGRCKTSVEMGSQNVGDTEEEEMDINLEGFDIPNPHGLKLPSGEY 120
           YFYDLEVVFGRDR T GRCKTSVEMGSQ V DTEE++MDINLE FDI NPHGL+LPSGE 
Sbjct: 366 YFYDLEVVFGRDRATGGRCKTSVEMGSQTVRDTEEDDMDINLEHFDILNPHGLELPSGED 425

Query: 121 MSSTPTSMAHDAKSSRPS 139
           M STPTSM HD KSSRPS
Sbjct: 426 MPSTPTSMVHDVKSSRPS 443

BLAST of MELO3C028975 vs. NCBI nr
Match: KAA0048191.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 222.6 bits (566), Expect = 2.1e-54
Identity = 116/172 (67.44%), Postives = 121/172 (70.35%), Query Frame = 0

Query: 1   MTSTNLKATKHWWTTIEDEALVECLLQLVEEGGWRADNGT-------------------- 60
           MTSTNLKAT+H WTTIEDEALVECLLQL+EEGGWR DNGT                    
Sbjct: 328 MTSTNLKATQHRWTTIEDEALVECLLQLMEEGGWRVDNGTFKLRYLVQIQKLMKEKIHGS 387

Query: 61  --------------LKPGYLGHPNVRGLLNKLFPYFYDLEVVFGRDRVTSGRCKTSVEMG 120
                         LK  Y GHPNVR LLNK FPYFYDLEVVFGRDR T GRCKTSVEMG
Sbjct: 388 NIQVTPNLELRIKILKKQYTGHPNVRSLLNKPFPYFYDLEVVFGRDRATGGRCKTSVEMG 447

Query: 121 SQNVGDTEEEEMDINLEGFDIPNPHGLKLPSGEYMSSTPTSMAHDAKSSRPS 139
           SQ V DTEE++MDINLE FDI NPHGL+LPSGE M STPTSM HD KSSRPS
Sbjct: 448 SQTVRDTEEDDMDINLEHFDILNPHGLELPSGEDMPSTPTSMVHDVKSSRPS 499

BLAST of MELO3C028975 vs. NCBI nr
Match: KAA0063789.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK07334.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 221.9 bits (564), Expect = 3.5e-54
Identity = 116/174 (66.67%), Postives = 120/174 (68.97%), Query Frame = 0

Query: 1   MTSTNLKATKHWWTTIEDEALVECLLQLVEEGGWRADNGTLKPGYL-------------- 60
           M STN KATKH WTTIEDEALVECLLQLVEEGGWRADN T KPGYL              
Sbjct: 52  MASTNSKATKHQWTTIEDEALVECLLQLVEEGGWRADNETFKPGYLYTVIAKMMRPAYSR 111

Query: 61  ----------------------GHPNVRGLLNKLFPYFYDLEVVFGRDRVTSGRCKTSVE 120
                                 GH N RGLLNK FPYFYDLEVVFGRDR T GRCKT V+
Sbjct: 112 FGWNEERKCIEAEKSVFDDWVKGHTNARGLLNKAFPYFYDLEVVFGRDRATIGRCKTPVQ 171

Query: 121 MGSQNVGDTEEEEMDINLEGFDIPNPHGLKLPSGEYMSSTPTSMAHDAKSSRPS 139
           MGSQ   DTEE++MDINLE FDIPNPHGLK PSGE M+STPTSMAHDA SSRPS
Sbjct: 172 MGSQIAKDTEEDDMDINLEDFDIPNPHGLKPPSGEDMTSTPTSMAHDAGSSRPS 225

BLAST of MELO3C028975 vs. NCBI nr
Match: TYK07921.1 (hypothetical protein E5676_scaffold265G00330 [Cucumis melo var. makuwa])

HSP 1 Score: 216.1 bits (549), Expect = 1.9e-52
Identity = 113/176 (64.20%), Postives = 117/176 (66.48%), Query Frame = 0

Query: 1   MTSTNLKATKHWWTTIEDEALVECLLQLVEEGGWRADNGTLKPGYL-------------- 60
           M STN KATKH WTTIEDE LVECLLQLVEEGGWRADNGT K GYL              
Sbjct: 138 MASTNSKATKHRWTTIEDEVLVECLLQLVEEGGWRADNGTFKLGYLKQYTAIAEMMGPAC 197

Query: 61  ------------------------GHPNVRGLLNKLFPYFYDLEVVFGRDRVTSGRCKTS 120
                                   GHPN +GLLNK FPYFYDLEVVFGRDR T GRCKT 
Sbjct: 198 SGFGWNEGQKCIEVEKPVFDDWVKGHPNAQGLLNKPFPYFYDLEVVFGRDRATGGRCKTP 257

Query: 121 VEMGSQNVGDTEEEEMDINLEGFDIPNPHGLKLPSGEYMSSTPTSMAHDAKSSRPS 139
           VEM SQ   DTEE++MDINLE FDIPNPHGL+ PSGE M STPTSM HDA SSRPS
Sbjct: 258 VEMSSQTARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPTSMTHDAGSSRPS 313

BLAST of MELO3C028975 vs. NCBI nr
Match: XP_008462939.1 (PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo])

HSP 1 Score: 212.6 bits (540), Expect = 2.1e-51
Identity = 111/176 (63.07%), Postives = 116/176 (65.91%), Query Frame = 0

Query: 1   MTSTNLKATKHWWTTIEDEALVECLLQLVEEGGWRADNGTLKPGYL-------------- 60
           M ST  KATKH WTTIEDE LVECLLQLVEEGGWRADNGT KPGYL              
Sbjct: 1   MASTYSKATKHRWTTIEDETLVECLLQLVEEGGWRADNGTFKPGYLKQYTAIAEMMGQAC 60

Query: 61  ------------------------GHPNVRGLLNKLFPYFYDLEVVFGRDRVTSGRCKTS 120
                                   GHPN R LLNK FPYFYDL++VFGRD  T  RCKT 
Sbjct: 61  SGFGWNEERKCIEAEKSVFDDWVKGHPNARDLLNKPFPYFYDLKIVFGRDMATGDRCKTP 120

Query: 121 VEMGSQNVGDTEEEEMDINLEGFDIPNPHGLKLPSGEYMSSTPTSMAHDAKSSRPS 139
           VEMGSQ   DTEE++MDINLE FDIPNPHGL+ PSGE M STPTSMAHDA SSRPS
Sbjct: 121 VEMGSQTARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPTSMAHDAGSSRPS 176

BLAST of MELO3C028975 vs. ExPASy TrEMBL
Match: A0A5D3C7X6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G002160 PE=3 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 7.9e-60
Identity = 116/138 (84.06%), Postives = 121/138 (87.68%), Query Frame = 0

Query: 1   MTSTNLKATKHWWTTIEDEALVECLLQLVEEGGWRADNGTLKPGYLGHPNVRGLLNKLFP 60
           MTSTNLKAT+H WTTIEDEALVECLLQL+EEGGWR DNGT K  YLGHPNVR LLNK FP
Sbjct: 306 MTSTNLKATQHRWTTIEDEALVECLLQLMEEGGWRVDNGTFKLRYLGHPNVRSLLNKPFP 365

Query: 61  YFYDLEVVFGRDRVTSGRCKTSVEMGSQNVGDTEEEEMDINLEGFDIPNPHGLKLPSGEY 120
           YFYDLEVVFGRDR T GRCKTSVEMGSQ V DTEE++MDINLE FDI NPHGL+LPSGE 
Sbjct: 366 YFYDLEVVFGRDRATGGRCKTSVEMGSQTVRDTEEDDMDINLEHFDILNPHGLELPSGED 425

Query: 121 MSSTPTSMAHDAKSSRPS 139
           M STPTSM HD KSSRPS
Sbjct: 426 MPSTPTSMVHDVKSSRPS 443

BLAST of MELO3C028975 vs. ExPASy TrEMBL
Match: A0A5A7U3R2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold63G001010 PE=3 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 1.0e-54
Identity = 116/172 (67.44%), Postives = 121/172 (70.35%), Query Frame = 0

Query: 1   MTSTNLKATKHWWTTIEDEALVECLLQLVEEGGWRADNGT-------------------- 60
           MTSTNLKAT+H WTTIEDEALVECLLQL+EEGGWR DNGT                    
Sbjct: 328 MTSTNLKATQHRWTTIEDEALVECLLQLMEEGGWRVDNGTFKLRYLVQIQKLMKEKIHGS 387

Query: 61  --------------LKPGYLGHPNVRGLLNKLFPYFYDLEVVFGRDRVTSGRCKTSVEMG 120
                         LK  Y GHPNVR LLNK FPYFYDLEVVFGRDR T GRCKTSVEMG
Sbjct: 388 NIQVTPNLELRIKILKKQYTGHPNVRSLLNKPFPYFYDLEVVFGRDRATGGRCKTSVEMG 447

Query: 121 SQNVGDTEEEEMDINLEGFDIPNPHGLKLPSGEYMSSTPTSMAHDAKSSRPS 139
           SQ V DTEE++MDINLE FDI NPHGL+LPSGE M STPTSM HD KSSRPS
Sbjct: 448 SQTVRDTEEDDMDINLEHFDILNPHGLELPSGEDMPSTPTSMVHDVKSSRPS 499

BLAST of MELO3C028975 vs. ExPASy TrEMBL
Match: A0A5A7VE44 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold202G00500 PE=4 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 1.7e-54
Identity = 116/174 (66.67%), Postives = 120/174 (68.97%), Query Frame = 0

Query: 1   MTSTNLKATKHWWTTIEDEALVECLLQLVEEGGWRADNGTLKPGYL-------------- 60
           M STN KATKH WTTIEDEALVECLLQLVEEGGWRADN T KPGYL              
Sbjct: 52  MASTNSKATKHQWTTIEDEALVECLLQLVEEGGWRADNETFKPGYLYTVIAKMMRPAYSR 111

Query: 61  ----------------------GHPNVRGLLNKLFPYFYDLEVVFGRDRVTSGRCKTSVE 120
                                 GH N RGLLNK FPYFYDLEVVFGRDR T GRCKT V+
Sbjct: 112 FGWNEERKCIEAEKSVFDDWVKGHTNARGLLNKAFPYFYDLEVVFGRDRATIGRCKTPVQ 171

Query: 121 MGSQNVGDTEEEEMDINLEGFDIPNPHGLKLPSGEYMSSTPTSMAHDAKSSRPS 139
           MGSQ   DTEE++MDINLE FDIPNPHGLK PSGE M+STPTSMAHDA SSRPS
Sbjct: 172 MGSQIAKDTEEDDMDINLEDFDIPNPHGLKPPSGEDMTSTPTSMAHDAGSSRPS 225

BLAST of MELO3C028975 vs. ExPASy TrEMBL
Match: A0A5D3C7T4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G00330 PE=4 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 9.3e-53
Identity = 113/176 (64.20%), Postives = 117/176 (66.48%), Query Frame = 0

Query: 1   MTSTNLKATKHWWTTIEDEALVECLLQLVEEGGWRADNGTLKPGYL-------------- 60
           M STN KATKH WTTIEDE LVECLLQLVEEGGWRADNGT K GYL              
Sbjct: 138 MASTNSKATKHRWTTIEDEVLVECLLQLVEEGGWRADNGTFKLGYLKQYTAIAEMMGPAC 197

Query: 61  ------------------------GHPNVRGLLNKLFPYFYDLEVVFGRDRVTSGRCKTS 120
                                   GHPN +GLLNK FPYFYDLEVVFGRDR T GRCKT 
Sbjct: 198 SGFGWNEGQKCIEVEKPVFDDWVKGHPNAQGLLNKPFPYFYDLEVVFGRDRATGGRCKTP 257

Query: 121 VEMGSQNVGDTEEEEMDINLEGFDIPNPHGLKLPSGEYMSSTPTSMAHDAKSSRPS 139
           VEM SQ   DTEE++MDINLE FDIPNPHGL+ PSGE M STPTSM HDA SSRPS
Sbjct: 258 VEMSSQTARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPTSMTHDAGSSRPS 313

BLAST of MELO3C028975 vs. ExPASy TrEMBL
Match: A0A1S3CI24 (uncharacterized protein At2g29880-like OS=Cucumis melo OX=3656 GN=LOC103501201 PE=4 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 1.0e-51
Identity = 111/176 (63.07%), Postives = 116/176 (65.91%), Query Frame = 0

Query: 1   MTSTNLKATKHWWTTIEDEALVECLLQLVEEGGWRADNGTLKPGYL-------------- 60
           M ST  KATKH WTTIEDE LVECLLQLVEEGGWRADNGT KPGYL              
Sbjct: 1   MASTYSKATKHRWTTIEDETLVECLLQLVEEGGWRADNGTFKPGYLKQYTAIAEMMGQAC 60

Query: 61  ------------------------GHPNVRGLLNKLFPYFYDLEVVFGRDRVTSGRCKTS 120
                                   GHPN R LLNK FPYFYDL++VFGRD  T  RCKT 
Sbjct: 61  SGFGWNEERKCIEAEKSVFDDWVKGHPNARDLLNKPFPYFYDLKIVFGRDMATGDRCKTP 120

Query: 121 VEMGSQNVGDTEEEEMDINLEGFDIPNPHGLKLPSGEYMSSTPTSMAHDAKSSRPS 139
           VEMGSQ   DTEE++MDINLE FDIPNPHGL+ PSGE M STPTSMAHDA SSRPS
Sbjct: 121 VEMGSQTARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPTSMAHDAGSSRPS 176

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TYK08067.11.6e-5984.06retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0048191.12.1e-5467.44retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0063789.13.5e-5466.67retrotransposon protein [Cucumis melo var. makuwa] >TYK07334.1 retrotransposon p... [more]
TYK07921.11.9e-5264.20hypothetical protein E5676_scaffold265G00330 [Cucumis melo var. makuwa][more]
XP_008462939.12.1e-5163.07PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3C7X67.9e-6084.06Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7U3R21.0e-5467.44Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7VE441.7e-5466.67Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3C7T49.3e-5364.20Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3CI241.0e-5163.07uncharacterized protein At2g29880-like OS=Cucumis melo OX=3656 GN=LOC103501201 P... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 113..138
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 119..138
NoneNo IPR availablePANTHERPTHR46250MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATEDcoord: 48..92
NoneNo IPR availablePANTHERPTHR46250:SF3MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEINcoord: 48..92
coord: 3..46
NoneNo IPR availablePANTHERPTHR46250MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATEDcoord: 3..46

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C028975.1MELO3C028975.1mRNA