Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTAGATGACATCGACAAATTTAAAAGCCACTAAGCATTGGTGGACCACTATTGAGGATGAGGCGTTAGTTGAATGCTTATTACAACTAGTGGAGGAAGGTGGTTGGAGGGCTGATAATGGAACACTCAAACCGGGATATTTGGTATAAGTACAAAAACTAATGAAAGAAAAAATTCCTGGAAGCAACATACAAGTGACTCCAAATCTAGAGTCGAGAGTAAAAATTTTAAAGAAGTAGTACACTGCCATAGCAAAGATGATGGAGTTAGCTTGTACTGGGTTTGGCTAGAATGAGGAACGAAAGTGCATTGAGGTAGAGAAATCCGTGTTCGATGACTGGGTTAAGGTAAGAAGATGAATATAATTCATACTTTCTATAAAAGTAAAATATAATATACTTACATATGTTAACTCCATGTAGGGACACCCCAATGTTCGAGGCTTACTAAATAAACTATTTCCTTACTTCTATGACTTGGAAGTCGTGTTTGGTAGAGATAGGGTTACTAGTGGTAGATGTAAGACATCTGTTGAAATGGGCTCACAGAATGTAGGAGATACTGAGGAAGAGGAAATGGACATTAATCTTGAAGGCTTTGATATTCCAAATCCACATGGACTCAAGCTACCTTCGGGGGAGTACATGTCATCCACTCCAACAAGTATGGCACATGATGCGAAATCATCTAGGCCAAGTA
mRNA sequence
TTAGATGACATCGACAAATTTAAAAGCCACTAAGCATTGGTGGACCACTATTGAGGATGAGGCGTTAGTTGAATGCTTATTACAACTAGTGGAGGAAGGTGGTTGGAGGGCTGATAATGGAACACTCAAACCGGGATATTTGGGACACCCCAATGTTCGAGGCTTACTAAATAAACTATTTCCTTACTTCTATGACTTGGAAGTCGTGTTTGGTAGAGATAGGGTTACTAGTGGTAGATGTAAGACATCTGTTGAAATGGGCTCACAGAATGTAGGAGATACTGAGGAAGAGGAAATGGACATTAATCTTGAAGGCTTTGATATTCCAAATCCACATGGACTCAAGCTACCTTCGGGGGAGTACATGTCATCCACTCCAACAAGTATGGCACATGATGCGAAATCATCTAGGCCAAGTA
Coding sequence (CDS)
ATGACATCGACAAATTTAAAAGCCACTAAGCATTGGTGGACCACTATTGAGGATGAGGCGTTAGTTGAATGCTTATTACAACTAGTGGAGGAAGGTGGTTGGAGGGCTGATAATGGAACACTCAAACCGGGATATTTGGGACACCCCAATGTTCGAGGCTTACTAAATAAACTATTTCCTTACTTCTATGACTTGGAAGTCGTGTTTGGTAGAGATAGGGTTACTAGTGGTAGATGTAAGACATCTGTTGAAATGGGCTCACAGAATGTAGGAGATACTGAGGAAGAGGAAATGGACATTAATCTTGAAGGCTTTGATATTCCAAATCCACATGGACTCAAGCTACCTTCGGGGGAGTACATGTCATCCACTCCAACAAGTATGGCACATGATGCGAAATCATCTAGGCCAAGT
Protein sequence
MTSTNLKATKHWWTTIEDEALVECLLQLVEEGGWRADNGTLKPGYLGHPNVRGLLNKLFPYFYDLEVVFGRDRVTSGRCKTSVEMGSQNVGDTEEEEMDINLEGFDIPNPHGLKLPSGEYMSSTPTSMAHDAKSSRPS
Homology
BLAST of MELO3C028975 vs. NCBI nr
Match:
TYK08067.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 239.6 bits (610), Expect = 1.6e-59
Identity = 116/138 (84.06%), Postives = 121/138 (87.68%), Query Frame = 0
Query: 1 MTSTNLKATKHWWTTIEDEALVECLLQLVEEGGWRADNGTLKPGYLGHPNVRGLLNKLFP 60
MTSTNLKAT+H WTTIEDEALVECLLQL+EEGGWR DNGT K YLGHPNVR LLNK FP
Sbjct: 306 MTSTNLKATQHRWTTIEDEALVECLLQLMEEGGWRVDNGTFKLRYLGHPNVRSLLNKPFP 365
Query: 61 YFYDLEVVFGRDRVTSGRCKTSVEMGSQNVGDTEEEEMDINLEGFDIPNPHGLKLPSGEY 120
YFYDLEVVFGRDR T GRCKTSVEMGSQ V DTEE++MDINLE FDI NPHGL+LPSGE
Sbjct: 366 YFYDLEVVFGRDRATGGRCKTSVEMGSQTVRDTEEDDMDINLEHFDILNPHGLELPSGED 425
Query: 121 MSSTPTSMAHDAKSSRPS 139
M STPTSM HD KSSRPS
Sbjct: 426 MPSTPTSMVHDVKSSRPS 443
BLAST of MELO3C028975 vs. NCBI nr
Match:
KAA0048191.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 222.6 bits (566), Expect = 2.1e-54
Identity = 116/172 (67.44%), Postives = 121/172 (70.35%), Query Frame = 0
Query: 1 MTSTNLKATKHWWTTIEDEALVECLLQLVEEGGWRADNGT-------------------- 60
MTSTNLKAT+H WTTIEDEALVECLLQL+EEGGWR DNGT
Sbjct: 328 MTSTNLKATQHRWTTIEDEALVECLLQLMEEGGWRVDNGTFKLRYLVQIQKLMKEKIHGS 387
Query: 61 --------------LKPGYLGHPNVRGLLNKLFPYFYDLEVVFGRDRVTSGRCKTSVEMG 120
LK Y GHPNVR LLNK FPYFYDLEVVFGRDR T GRCKTSVEMG
Sbjct: 388 NIQVTPNLELRIKILKKQYTGHPNVRSLLNKPFPYFYDLEVVFGRDRATGGRCKTSVEMG 447
Query: 121 SQNVGDTEEEEMDINLEGFDIPNPHGLKLPSGEYMSSTPTSMAHDAKSSRPS 139
SQ V DTEE++MDINLE FDI NPHGL+LPSGE M STPTSM HD KSSRPS
Sbjct: 448 SQTVRDTEEDDMDINLEHFDILNPHGLELPSGEDMPSTPTSMVHDVKSSRPS 499
BLAST of MELO3C028975 vs. NCBI nr
Match:
KAA0063789.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK07334.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 221.9 bits (564), Expect = 3.5e-54
Identity = 116/174 (66.67%), Postives = 120/174 (68.97%), Query Frame = 0
Query: 1 MTSTNLKATKHWWTTIEDEALVECLLQLVEEGGWRADNGTLKPGYL-------------- 60
M STN KATKH WTTIEDEALVECLLQLVEEGGWRADN T KPGYL
Sbjct: 52 MASTNSKATKHQWTTIEDEALVECLLQLVEEGGWRADNETFKPGYLYTVIAKMMRPAYSR 111
Query: 61 ----------------------GHPNVRGLLNKLFPYFYDLEVVFGRDRVTSGRCKTSVE 120
GH N RGLLNK FPYFYDLEVVFGRDR T GRCKT V+
Sbjct: 112 FGWNEERKCIEAEKSVFDDWVKGHTNARGLLNKAFPYFYDLEVVFGRDRATIGRCKTPVQ 171
Query: 121 MGSQNVGDTEEEEMDINLEGFDIPNPHGLKLPSGEYMSSTPTSMAHDAKSSRPS 139
MGSQ DTEE++MDINLE FDIPNPHGLK PSGE M+STPTSMAHDA SSRPS
Sbjct: 172 MGSQIAKDTEEDDMDINLEDFDIPNPHGLKPPSGEDMTSTPTSMAHDAGSSRPS 225
BLAST of MELO3C028975 vs. NCBI nr
Match:
TYK07921.1 (hypothetical protein E5676_scaffold265G00330 [Cucumis melo var. makuwa])
HSP 1 Score: 216.1 bits (549), Expect = 1.9e-52
Identity = 113/176 (64.20%), Postives = 117/176 (66.48%), Query Frame = 0
Query: 1 MTSTNLKATKHWWTTIEDEALVECLLQLVEEGGWRADNGTLKPGYL-------------- 60
M STN KATKH WTTIEDE LVECLLQLVEEGGWRADNGT K GYL
Sbjct: 138 MASTNSKATKHRWTTIEDEVLVECLLQLVEEGGWRADNGTFKLGYLKQYTAIAEMMGPAC 197
Query: 61 ------------------------GHPNVRGLLNKLFPYFYDLEVVFGRDRVTSGRCKTS 120
GHPN +GLLNK FPYFYDLEVVFGRDR T GRCKT
Sbjct: 198 SGFGWNEGQKCIEVEKPVFDDWVKGHPNAQGLLNKPFPYFYDLEVVFGRDRATGGRCKTP 257
Query: 121 VEMGSQNVGDTEEEEMDINLEGFDIPNPHGLKLPSGEYMSSTPTSMAHDAKSSRPS 139
VEM SQ DTEE++MDINLE FDIPNPHGL+ PSGE M STPTSM HDA SSRPS
Sbjct: 258 VEMSSQTARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPTSMTHDAGSSRPS 313
BLAST of MELO3C028975 vs. NCBI nr
Match:
XP_008462939.1 (PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo])
HSP 1 Score: 212.6 bits (540), Expect = 2.1e-51
Identity = 111/176 (63.07%), Postives = 116/176 (65.91%), Query Frame = 0
Query: 1 MTSTNLKATKHWWTTIEDEALVECLLQLVEEGGWRADNGTLKPGYL-------------- 60
M ST KATKH WTTIEDE LVECLLQLVEEGGWRADNGT KPGYL
Sbjct: 1 MASTYSKATKHRWTTIEDETLVECLLQLVEEGGWRADNGTFKPGYLKQYTAIAEMMGQAC 60
Query: 61 ------------------------GHPNVRGLLNKLFPYFYDLEVVFGRDRVTSGRCKTS 120
GHPN R LLNK FPYFYDL++VFGRD T RCKT
Sbjct: 61 SGFGWNEERKCIEAEKSVFDDWVKGHPNARDLLNKPFPYFYDLKIVFGRDMATGDRCKTP 120
Query: 121 VEMGSQNVGDTEEEEMDINLEGFDIPNPHGLKLPSGEYMSSTPTSMAHDAKSSRPS 139
VEMGSQ DTEE++MDINLE FDIPNPHGL+ PSGE M STPTSMAHDA SSRPS
Sbjct: 121 VEMGSQTARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPTSMAHDAGSSRPS 176
BLAST of MELO3C028975 vs. ExPASy TrEMBL
Match:
A0A5D3C7X6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G002160 PE=3 SV=1)
HSP 1 Score: 239.6 bits (610), Expect = 7.9e-60
Identity = 116/138 (84.06%), Postives = 121/138 (87.68%), Query Frame = 0
Query: 1 MTSTNLKATKHWWTTIEDEALVECLLQLVEEGGWRADNGTLKPGYLGHPNVRGLLNKLFP 60
MTSTNLKAT+H WTTIEDEALVECLLQL+EEGGWR DNGT K YLGHPNVR LLNK FP
Sbjct: 306 MTSTNLKATQHRWTTIEDEALVECLLQLMEEGGWRVDNGTFKLRYLGHPNVRSLLNKPFP 365
Query: 61 YFYDLEVVFGRDRVTSGRCKTSVEMGSQNVGDTEEEEMDINLEGFDIPNPHGLKLPSGEY 120
YFYDLEVVFGRDR T GRCKTSVEMGSQ V DTEE++MDINLE FDI NPHGL+LPSGE
Sbjct: 366 YFYDLEVVFGRDRATGGRCKTSVEMGSQTVRDTEEDDMDINLEHFDILNPHGLELPSGED 425
Query: 121 MSSTPTSMAHDAKSSRPS 139
M STPTSM HD KSSRPS
Sbjct: 426 MPSTPTSMVHDVKSSRPS 443
BLAST of MELO3C028975 vs. ExPASy TrEMBL
Match:
A0A5A7U3R2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold63G001010 PE=3 SV=1)
HSP 1 Score: 222.6 bits (566), Expect = 1.0e-54
Identity = 116/172 (67.44%), Postives = 121/172 (70.35%), Query Frame = 0
Query: 1 MTSTNLKATKHWWTTIEDEALVECLLQLVEEGGWRADNGT-------------------- 60
MTSTNLKAT+H WTTIEDEALVECLLQL+EEGGWR DNGT
Sbjct: 328 MTSTNLKATQHRWTTIEDEALVECLLQLMEEGGWRVDNGTFKLRYLVQIQKLMKEKIHGS 387
Query: 61 --------------LKPGYLGHPNVRGLLNKLFPYFYDLEVVFGRDRVTSGRCKTSVEMG 120
LK Y GHPNVR LLNK FPYFYDLEVVFGRDR T GRCKTSVEMG
Sbjct: 388 NIQVTPNLELRIKILKKQYTGHPNVRSLLNKPFPYFYDLEVVFGRDRATGGRCKTSVEMG 447
Query: 121 SQNVGDTEEEEMDINLEGFDIPNPHGLKLPSGEYMSSTPTSMAHDAKSSRPS 139
SQ V DTEE++MDINLE FDI NPHGL+LPSGE M STPTSM HD KSSRPS
Sbjct: 448 SQTVRDTEEDDMDINLEHFDILNPHGLELPSGEDMPSTPTSMVHDVKSSRPS 499
BLAST of MELO3C028975 vs. ExPASy TrEMBL
Match:
A0A5A7VE44 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold202G00500 PE=4 SV=1)
HSP 1 Score: 221.9 bits (564), Expect = 1.7e-54
Identity = 116/174 (66.67%), Postives = 120/174 (68.97%), Query Frame = 0
Query: 1 MTSTNLKATKHWWTTIEDEALVECLLQLVEEGGWRADNGTLKPGYL-------------- 60
M STN KATKH WTTIEDEALVECLLQLVEEGGWRADN T KPGYL
Sbjct: 52 MASTNSKATKHQWTTIEDEALVECLLQLVEEGGWRADNETFKPGYLYTVIAKMMRPAYSR 111
Query: 61 ----------------------GHPNVRGLLNKLFPYFYDLEVVFGRDRVTSGRCKTSVE 120
GH N RGLLNK FPYFYDLEVVFGRDR T GRCKT V+
Sbjct: 112 FGWNEERKCIEAEKSVFDDWVKGHTNARGLLNKAFPYFYDLEVVFGRDRATIGRCKTPVQ 171
Query: 121 MGSQNVGDTEEEEMDINLEGFDIPNPHGLKLPSGEYMSSTPTSMAHDAKSSRPS 139
MGSQ DTEE++MDINLE FDIPNPHGLK PSGE M+STPTSMAHDA SSRPS
Sbjct: 172 MGSQIAKDTEEDDMDINLEDFDIPNPHGLKPPSGEDMTSTPTSMAHDAGSSRPS 225
BLAST of MELO3C028975 vs. ExPASy TrEMBL
Match:
A0A5D3C7T4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G00330 PE=4 SV=1)
HSP 1 Score: 216.1 bits (549), Expect = 9.3e-53
Identity = 113/176 (64.20%), Postives = 117/176 (66.48%), Query Frame = 0
Query: 1 MTSTNLKATKHWWTTIEDEALVECLLQLVEEGGWRADNGTLKPGYL-------------- 60
M STN KATKH WTTIEDE LVECLLQLVEEGGWRADNGT K GYL
Sbjct: 138 MASTNSKATKHRWTTIEDEVLVECLLQLVEEGGWRADNGTFKLGYLKQYTAIAEMMGPAC 197
Query: 61 ------------------------GHPNVRGLLNKLFPYFYDLEVVFGRDRVTSGRCKTS 120
GHPN +GLLNK FPYFYDLEVVFGRDR T GRCKT
Sbjct: 198 SGFGWNEGQKCIEVEKPVFDDWVKGHPNAQGLLNKPFPYFYDLEVVFGRDRATGGRCKTP 257
Query: 121 VEMGSQNVGDTEEEEMDINLEGFDIPNPHGLKLPSGEYMSSTPTSMAHDAKSSRPS 139
VEM SQ DTEE++MDINLE FDIPNPHGL+ PSGE M STPTSM HDA SSRPS
Sbjct: 258 VEMSSQTARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPTSMTHDAGSSRPS 313
BLAST of MELO3C028975 vs. ExPASy TrEMBL
Match:
A0A1S3CI24 (uncharacterized protein At2g29880-like OS=Cucumis melo OX=3656 GN=LOC103501201 PE=4 SV=1)
HSP 1 Score: 212.6 bits (540), Expect = 1.0e-51
Identity = 111/176 (63.07%), Postives = 116/176 (65.91%), Query Frame = 0
Query: 1 MTSTNLKATKHWWTTIEDEALVECLLQLVEEGGWRADNGTLKPGYL-------------- 60
M ST KATKH WTTIEDE LVECLLQLVEEGGWRADNGT KPGYL
Sbjct: 1 MASTYSKATKHRWTTIEDETLVECLLQLVEEGGWRADNGTFKPGYLKQYTAIAEMMGQAC 60
Query: 61 ------------------------GHPNVRGLLNKLFPYFYDLEVVFGRDRVTSGRCKTS 120
GHPN R LLNK FPYFYDL++VFGRD T RCKT
Sbjct: 61 SGFGWNEERKCIEAEKSVFDDWVKGHPNARDLLNKPFPYFYDLKIVFGRDMATGDRCKTP 120
Query: 121 VEMGSQNVGDTEEEEMDINLEGFDIPNPHGLKLPSGEYMSSTPTSMAHDAKSSRPS 139
VEMGSQ DTEE++MDINLE FDIPNPHGL+ PSGE M STPTSMAHDA SSRPS
Sbjct: 121 VEMGSQTARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPTSMAHDAGSSRPS 176
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
TYK08067.1 | 1.6e-59 | 84.06 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
KAA0048191.1 | 2.1e-54 | 67.44 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
KAA0063789.1 | 3.5e-54 | 66.67 | retrotransposon protein [Cucumis melo var. makuwa] >TYK07334.1 retrotransposon p... | [more] |
TYK07921.1 | 1.9e-52 | 64.20 | hypothetical protein E5676_scaffold265G00330 [Cucumis melo var. makuwa] | [more] |
XP_008462939.1 | 2.1e-51 | 63.07 | PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5D3C7X6 | 7.9e-60 | 84.06 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5A7U3R2 | 1.0e-54 | 67.44 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
A0A5A7VE44 | 1.7e-54 | 66.67 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5D3C7T4 | 9.3e-53 | 64.20 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A1S3CI24 | 1.0e-51 | 63.07 | uncharacterized protein At2g29880-like OS=Cucumis melo OX=3656 GN=LOC103501201 P... | [more] |
Match Name | E-value | Identity | Description | |