MELO3C028964 (gene) Melon (DHL92) v4

Overview


Name	MELO3C028964
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Retrotransposon protein
Location	chr01: 10951701 .. 10952431 (-)
RNA-Seq Expression	MELO3C028964
Synteny	MELO3C028964

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATGTCTTTGTTGTCATCTTCATTGTCAATATGGCAAGTTCGTCGTGTACCCCTAAGCATGTGTGGACAAAGGAGGAGGAGGCCACACTAGTAGAGTGTTTGGTGGAGTTCTATCCAGGAGTGGATGAAAGTCGGAAAATAGTACGTTCCGACCAAGTTATCTGGCCCAACTTGTCCAAATGATGGCTGCAAAGTTGCATGGATGTCTTGTCCAAGCCACTATTGTTATGGACTATCGAATAAAGACATTGAAATGGACCTTTCAGGAAATCACAGAAATTTGGCCCATCATGCAGTGGGTTCAGATGTAATGATGAGGCGAAGTGCATAATTGCTGAGAAGTACCTGTTCAATAACCAGGTCAGGGTAAGGAAAATTTTTTAAAATGGAACAATACTTTAAAACTTTACTTCGATCGTTTAGATAATTCAAGTTTTTATTGACCATGTTTTTATGCAGACACACCTTGCAGTGAAGGGCCTCCTGAACAAAGTGTTTCCCTATTACGATGAATTGGCCTATGTGTTCGAGAGGGATTGGGCGACGGGTTGAGGTGCAGAGACTTTGCTGACGTCGAGTCTAATGATCCTAGCAGGTACGGAGGATTTCAAATGCCTAATGGAATCGATATGGAGATCCCCGCAATGTACAACCAGGGGTTTTGCATGTCCAAGTATTCACACGAGATTTCTAGAGAAATTTGGTTCGTGGAGTTGAACTTGTTTTGA

mRNA sequence

ATGAATGTCTTTGTTGTCATCTTCATTGTCAATATGGCAAGTTCGTCGTGTACCCCTAAGCATGTGTGGACAAAGGAGGAGGAGGCCACACTAGTAGAGTGTTTGGTGGAGTTCTATCCAGGAGTGGATGAAAGTCGGAAAATAGTACGTTCCGACCAAAAATTTGGCCCATCATGCAGTGGGTTCAGATGTAATGATGAGGCGAAGTGCATAATTGCTGAGAAGTACCTGTTCAATAACCAGGTCAGGACACACCTTGCAGTGAAGGGCCTCCTGAACAAAGTGTTTCCCTATTACGATGAATTGGCCTATGTGTTCGAGAGGGATTGGGCGACGGGTTGAGGTGCAGAGACTTTGCTGACGTCGAGTCTAATGATCCTAGCAGGTACGGAGGATTTCAAATGCCTAATGGAATCGATATGGAGATCCCCGCAATGTACAACCAGGGGTTTTGCATGTCCAAGTATTCACACGAGATTTCTAGAGAAATTTGGTTCGTGGAGTTGAACTTGTTTTGA

Coding sequence (CDS)

ATGAATGTCTTTGTTGTCATCTTCATTGTCAATATGGCAAGTTCGTCGTGTACCCCTAAGCATGTGTGGACAAAGGAGGAGGAGGCCACACTAGTAGAGTGTTTGGTGGAGTTCTATCCAGGAGTGGATGAAAGTCGGAAAATAGTACGTTCCGACCAAAAATTTGGCCCATCATGCAGTGGGTTCAGATGTAATGATGAGGCGAAGTGCATAATTGCTGAGAAGTACCTGTTCAATAACCAGGTCAGGACACACCTTGCAGTGAAGGGCCTCCTGAACAAAGTGTTTCCCTATTACGATGAATTGGCCTATGTGTTCGAGAGGGATTGGGCGACGGGTTGA

Protein sequence

MNVFVVIFIVNMASSSCTPKHVWTKEEEATLVECLVEFYPGVDESRKIVRSDQKFGPSCSGFRCNDEAKCIIAEKYLFNNQVRTHLAVKGLLNKVFPYYDELAYVFERDWATG

Homology

[Close]

BLAST of MELO3C028964 vs. NCBI nr
Match: KAA0042476.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK22900.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 129.0 bits (323), Expect = 2.5e-26
Identity = 64/102 (62.75%), Postives = 73/102 (71.57%), Query Frame = 0


Query: 12  MASSSCTPKHVWTKEEEATLVECLVEFYPGVDESRKIVRSDQKFGPSCSGFRCNDEAKCI 71
           M +SS  PKHVWTKEEE TLVECLV+           V+     GP+CSGF  ND+AKCI
Sbjct: 1   MTTSSRAPKHVWTKEEEDTLVECLVQLVSIRGWKSDNVKPIAMRGPACSGFGWNDDAKCI 60

Query: 72  IAEKYLFNNQVRTHLAVKGLLNKVFPYYDELAYVFERDWATG 114
           IAEK +FNN V++H AVKGLLNK FPYYDELAYV+ RD  TG
Sbjct: 61  IAEKEVFNNWVKSHPAVKGLLNKPFPYYDELAYVYGRDKTTG 102

[Close]

BLAST of MELO3C028964 vs. NCBI nr
Match: XP_031743896.1 (uncharacterized protein LOC116404722 [Cucumis sativus] >XP_031743897.1 uncharacterized protein LOC116404722 [Cucumis sativus] >XP_031743898.1 uncharacterized protein LOC116404722 [Cucumis sativus])

HSP 1 Score: 127.5 bits (319), Expect = 7.4e-26
Identity = 71/145 (48.97%), Postives = 83/145 (57.24%), Query Frame = 0


Query: 10  VNMASSSCTPKHVWTKEEEATLVECLVEF----------------------------YPG 69
           VNM  SSC PKHVW KEEEATLVEC+VEF                             PG
Sbjct: 39  VNMTCSSCAPKHVWMKEEEATLVECMVEFVSARGWKSDNGTFRPGYLAQLLRMMTAKLPG 98

Query: 70  --------VDESRKIVRSD-----QKFGPSCSGFRCNDEAKCIIAEKYLFNNQVRTHLAV 114
                   +D S K ++       +   PSCSGF  ND+AKCI+AEK LF+N VR+HLA 
Sbjct: 99  CNVHETTVIDCSIKTLKRSYQAIAEMHDPSCSGFGWNDDAKCIVAEKELFDNWVRSHLAA 158

[Close]

BLAST of MELO3C028964 vs. NCBI nr
Match: KAA0056563.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 126.7 bits (317), Expect = 1.3e-25
Identity = 65/116 (56.03%), Postives = 78/116 (67.24%), Query Frame = 0


Query: 12  MASSSCTPKHVWTKEEEATLVECLVE-------------FYPG-VDESRKIVRSDQKFGP 71
           M++S+  P+HVWT+EEE TLVECL+E             F PG + + R      +  GP
Sbjct: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLRTFQAIAEMRGP 60

Query: 72  SCSGFRCNDEAKCIIAEKYLFNNQVRTHLAVKGLLNKVFPYYDELAYVFERDWATG 114
           +CSGFR NDE KCI+AEK LF+N VR+H A KGLLNK FPYYDEL YVF RD ATG
Sbjct: 61  ACSGFRWNDEEKCIVAEKELFDNWVRSHPAAKGLLNKPFPYYDELTYVFGRDRATG 116

[Close]

BLAST of MELO3C028964 vs. NCBI nr
Match: KAA0067987.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 125.2 bits (313), Expect = 3.7e-25
Identity = 65/116 (56.03%), Postives = 77/116 (66.38%), Query Frame = 0


Query: 12  MASSSCTPKHVWTKEEEATLVECLVE-------------FYPG-VDESRKIVRSDQKFGP 71
           M++S+C P+HVWTKE E TLVECL+E             F PG + + R      +  GP
Sbjct: 1   MSTSNCAPRHVWTKEGEWTLVECLMELVSMGGWKSDNGTFRPGYLAQLRTFQAIVEMRGP 60

Query: 72  SCSGFRCNDEAKCIIAEKYLFNNQVRTHLAVKGLLNKVFPYYDELAYVFERDWATG 114
           +CSGF  NDE KCIIAEK LF+N VR+H A KGL+NK FPYYDEL YVF RD ATG
Sbjct: 61  ACSGFGWNDEEKCIIAEKKLFDNWVRSHPAAKGLMNKPFPYYDELTYVFGRDRATG 116

[Close]

BLAST of MELO3C028964 vs. NCBI nr
Match: KAA0043158.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 124.0 bits (310), Expect = 8.1e-25
Identity = 64/116 (55.17%), Postives = 77/116 (66.38%), Query Frame = 0


Query: 12  MASSSCTPKHVWTKEEEATLVECLVE-------------FYPG-VDESRKIVRSDQKFGP 71
           M++S+  P+HVWT+EEE TLVECL+E             F PG + + R      +  GP
Sbjct: 1   MSTSNHAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFLPGYLAQLRTFQAIVEMRGP 60

Query: 72  SCSGFRCNDEAKCIIAEKYLFNNQVRTHLAVKGLLNKVFPYYDELAYVFERDWATG 114
           +CSGF  NDE KCI+AEK LF+N VR+H A KGLLNK FPYYDEL YVF RD ATG
Sbjct: 61  ACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKGLLNKSFPYYDELTYVFGRDRATG 116

[Close]

BLAST of MELO3C028964 vs. ExPASy TrEMBL
Match: A0A5A7TKK2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold334G00410 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 1.2e-26
Identity = 64/102 (62.75%), Postives = 73/102 (71.57%), Query Frame = 0


Query: 12  MASSSCTPKHVWTKEEEATLVECLVEFYPGVDESRKIVRSDQKFGPSCSGFRCNDEAKCI 71
           M +SS  PKHVWTKEEE TLVECLV+           V+     GP+CSGF  ND+AKCI
Sbjct: 1   MTTSSRAPKHVWTKEEEDTLVECLVQLVSIRGWKSDNVKPIAMRGPACSGFGWNDDAKCI 60

Query: 72  IAEKYLFNNQVRTHLAVKGLLNKVFPYYDELAYVFERDWATG 114
           IAEK +FNN V++H AVKGLLNK FPYYDELAYV+ RD  TG
Sbjct: 61  IAEKEVFNNWVKSHPAVKGLLNKPFPYYDELAYVYGRDKTTG 102

[Close]

BLAST of MELO3C028964 vs. ExPASy TrEMBL
Match: A0A5A7UL03 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold288G00680 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 6.1e-26
Identity = 65/116 (56.03%), Postives = 78/116 (67.24%), Query Frame = 0


Query: 12  MASSSCTPKHVWTKEEEATLVECLVE-------------FYPG-VDESRKIVRSDQKFGP 71
           M++S+  P+HVWT+EEE TLVECL+E             F PG + + R      +  GP
Sbjct: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLRTFQAIAEMRGP 60

Query: 72  SCSGFRCNDEAKCIIAEKYLFNNQVRTHLAVKGLLNKVFPYYDELAYVFERDWATG 114
           +CSGFR NDE KCI+AEK LF+N VR+H A KGLLNK FPYYDEL YVF RD ATG
Sbjct: 61  ACSGFRWNDEEKCIVAEKELFDNWVRSHPAAKGLLNKPFPYYDELTYVFGRDRATG 116

[Close]

BLAST of MELO3C028964 vs. ExPASy TrEMBL
Match: A0A5A7VL88 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold138G001760 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 1.8e-25
Identity = 65/116 (56.03%), Postives = 77/116 (66.38%), Query Frame = 0


Query: 12  MASSSCTPKHVWTKEEEATLVECLVE-------------FYPG-VDESRKIVRSDQKFGP 71
           M++S+C P+HVWTKE E TLVECL+E             F PG + + R      +  GP
Sbjct: 1   MSTSNCAPRHVWTKEGEWTLVECLMELVSMGGWKSDNGTFRPGYLAQLRTFQAIVEMRGP 60

Query: 72  SCSGFRCNDEAKCIIAEKYLFNNQVRTHLAVKGLLNKVFPYYDELAYVFERDWATG 114
           +CSGF  NDE KCIIAEK LF+N VR+H A KGL+NK FPYYDEL YVF RD ATG
Sbjct: 61  ACSGFGWNDEEKCIIAEKKLFDNWVRSHPAAKGLMNKPFPYYDELTYVFGRDRATG 116

[Close]

BLAST of MELO3C028964 vs. ExPASy TrEMBL
Match: A0A5A7TK19 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold110G00210 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 3.9e-25
Identity = 64/116 (55.17%), Postives = 77/116 (66.38%), Query Frame = 0


Query: 12  MASSSCTPKHVWTKEEEATLVECLVE-------------FYPG-VDESRKIVRSDQKFGP 71
           M++S+  P+HVWT+EEE TLVECL+E             F PG + + R      +  GP
Sbjct: 1   MSTSNHAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFLPGYLAQLRTFQAIVEMRGP 60

Query: 72  SCSGFRCNDEAKCIIAEKYLFNNQVRTHLAVKGLLNKVFPYYDELAYVFERDWATG 114
           +CSGF  NDE KCI+AEK LF+N VR+H A KGLLNK FPYYDEL YVF RD ATG
Sbjct: 61  ACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKGLLNKSFPYYDELTYVFGRDRATG 116

[Close]

BLAST of MELO3C028964 vs. ExPASy TrEMBL
Match: A0A5A7SXI6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold56G00820 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 8.8e-25
Identity = 64/116 (55.17%), Postives = 76/116 (65.52%), Query Frame = 0


Query: 12  MASSSCTPKHVWTKEEEATLVECLVE-------------FYPG-VDESRKIVRSDQKFGP 71
           M++S+  P+HVWTKEEE TLVECL+E             F PG + + R      +  GP
Sbjct: 1   MSTSNRAPRHVWTKEEEGTLVECLMELVSMGGWKLDNGTFRPGYLAQLRTFQAIAEMRGP 60

Query: 72  SCSGFRCNDEAKCIIAEKYLFNNQVRTHLAVKGLLNKVFPYYDELAYVFERDWATG 114
           +CS F  NDE KCI+AEK LF+N VR+H A KGLLNK FPYYDEL YVF RD ATG
Sbjct: 61  ACSSFGWNDEEKCIVAEKELFDNWVRSHPAAKGLLNKPFPYYDELTYVFGRDRATG 116

The following BLAST results are available for this feature:

BLAST of MELO3C028964 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0042476.1	2.5e-26	62.75	retrotransposon protein [Cucumis melo var. makuwa] >TYK22900.1 retrotransposon p...	[more]
XP_031743896.1	7.4e-26	48.97	uncharacterized protein LOC116404722 [Cucumis sativus] >XP_031743897.1 uncharact...	[more]
KAA0056563.1	1.3e-25	56.03	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0067987.1	3.7e-25	56.03	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0043158.1	8.1e-25	55.17	retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C028964 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C028964 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TKK2	1.2e-26	62.75	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7UL03	6.1e-26	56.03	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7VL88	1.8e-25	56.03	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7TK19	3.9e-25	55.17	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7SXI6	8.8e-25	55.17	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of MELO3C028964 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR46250:SF3	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN	coord: 56..113
None	No IPR available	PANTHER	PTHR46250	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATED	coord: 56..113

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C028964.1	MELO3C028964.1	mRNA