MELO3C028954 (gene) Melon (DHL92) v4

Overview


Name	MELO3C028954
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Unknown protein
Location	chr01: 10607428 .. 10608622 (-)
RNA-Seq Expression	MELO3C028954
Synteny	MELO3C028954

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTCATTTCCCCTCAGTAAATATGGACAAATTGAAGGATAGGTTCTTAGCAAAGTGCTTCAATGATAACGAGTTTATTCCTACGTCAAAGGTGTCATTCCTTTTTAATGATTCTAAAAAATTAAAAATGAGAATTGGGTCAAAATGGCAAAACCTTTATTTCTTGTCAAACTTTTTATTGGGAAAACAAATAACTACTAGGGGTAGATGTGGACCATATCATATAGCTAGATGATGAAAGGCAATTTGATAACAATCCATGGGCTAGAATAACATATTATATGGCTATTCGCTTTATCAATAAATCAATTAAGAACCCTTTTGCCCTAGCTGTAGGAATTTTTGAATTCGCATATGCTCTTCTTGTGTGAGCATATGAGTGCATACCACTATTAACTTAGACCAAACATCTTCTGTGTCCAAAAAGTAGATGAGAGGAATCTGAAAATATTGAATTGAGTTGTTAATAGCCAGCTGGAATGGAAAGAGCTTGCTACCAAGGTGTTTGACAATGAAGAGGTAGTATATTTTACATATTGTACTCTATATTTATTAATTTATTGTGAATATTATTAATGTATTAGTATGTACCAGACTAATATATATATGTCTATTTTGTCATAGTTTGTCTTCCATCAATTGTTGCTAGAAGAAGATATGGAACAAAGGACGTTTCGTGAAGGTGAAACGTGAAAGAAACTGAAGAAGACTTATGAAGAAGGAGAATGTTCAAGGGAAGCAAATAAAACACACTTTGATATGCCTGATTACTTCATCAGCTTCCAGGAAATGATTTTTACTAGTTATGAATCATTGAATAGAAAGATAGAGAAGTTGTTTAATGAAGTTGAGGAATGGAATAATATTTTGAAAGAAAAAAATATTCCAACCCTTGTTGACCAAGATAATCAAGAGCCTGACAACAATGAAGACCCTAGTGGGAGCAATGGTCAATCAAATGATGGTAAAATTGATGAAGGACAAGATAATATGGAAAATGAAAATATGGATGGGCAAGAAGACAAACCAAGAAAATACAGAAAAATCCAAATGATGGAGAGTAGGTTAGTGTATTTGATTAACTTAATAATATATAAATTGTGATAATGTTATATTGTTTATTTATAGATATTATAGCCTAACTATCATGTTCAGTAGAATGCCCCAAATGATTGCATTAATGCAGATCTGTA

mRNA sequence

ATGGGTCATTTCCCCTCAGTAAATATGGACAAATTGAAGGATAGGTTCTTAGCAAAGTGCTTCAATGATAACGAGTTTATTCCTACGTCAAAGCTGGAATGGAAAGAGCTTGCTACCAAGGTGTTTGACAATGAAGAGTTTGTCTTCCATCAATTGTTGCTAGAAGAAGATATGGAACAAAGGACGTTTCGTGAAGGTGAAACGTGAAAGAAACTGAAGAAGACTTATGAAGAAGGAGAATGTTCAAGGGAAGCAAATAAAACACACTTTGATATGCCTGATTACTTCATCAGCTTCCAGGAAATGATTTTTACTAGTTATGAATCATTGAATAGAAAGATAGAGAAGTTGTTTAATGAAGTTGAGGAATGGAATAATATTTTGAAAGAAAAAAATATTCCAACCCTTGTTGACCAAGATAATCAAGAGCCTGACAACAATGAAGACCCTAGTGGGAGCAATGGTCAATCAAATGATGGTAAAATTGATGAAGGACAAGATAATATGGAAAATGAAAATATGGATGGGCAAGAAGACAAACCAAGAAAATACAGAAAAATCCAAATGATGGAGAGTAGGTTAGTGTATTTGATTAACTTAATAATATATAAATTGTGATAATGTTATATTGTTTATTTATAGATATTATAGCCTAACTATCATGTTCAGTAGAATGCCCCAAATGATTGCATTAATGCAGATCTGTA

Coding sequence (CDS)

ATGCCTGATTACTTCATCAGCTTCCAGGAAATGATTTTTACTAGTTATGAATCATTGAATAGAAAGATAGAGAAGTTGTTTAATGAAGTTGAGGAATGGAATAATATTTTGAAAGAAAAAAATATTCCAACCCTTGTTGACCAAGATAATCAAGAGCCTGACAACAATGAAGACCCTAGTGGGAGCAATGGTCAATCAAATGATGGTAAAATTGATGAAGGACAAGATAATATGGAAAATGAAAATATGGATGGGCAAGAAGACAAACCAAGAAAATACAGAAAAATCCAAATGATGGAGAGTAGGTTAGTGTATTTGATTAACTTAATAATATATAAATTGTGA

Protein sequence

MPDYFISFQEMIFTSYESLNRKIEKLFNEVEEWNNILKEKNIPTLVDQDNQEPDNNEDPSGSNGQSNDGKIDEGQDNMENENMDGQEDKPRKYRKIQMMESRLVYLINLIIYKL

Homology

[Close]

BLAST of MELO3C028954 vs. NCBI nr
Match: KAE8653550.1 (hypothetical protein Csa_006898, partial [Cucumis sativus])

HSP 1 Score: 54.3 bits (129), Expect = 8.0e-04
Identity = 35/90 (38.89%), Postives = 60/90 (66.67%), Query Frame = 0


Query: 1   MPDYFISFQEMIFTSYESLNRKIEKLFNEVEEWNNILKEKNIPTLVDQDNQEPDNNEDPS 60
           +P+Y+++FQ+++ T+ E LN+K++KL  EVEE  N  K  N  +L+ ++    + +ED  
Sbjct: 25  IPEYYLTFQKIMLTNNEELNKKLDKLIGEVEEIKN--KLTNRSSLMTEEENWKEMDEDRD 84

Query: 61  GSNGQSNDGKIDEGQD-NMENENMDGQEDK 90
           G NG+ +D  ++EG+D N EN NMD + D+
Sbjct: 85  GGNGERDDRLVNEGEDGNTENINMDEEGDR 112

[Close]

BLAST of MELO3C028954 vs. ExPASy TrEMBL
Match: A0A5A7V8N4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G003890 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 6.6e-04
Identity = 30/70 (42.86%), Postives = 45/70 (64.29%), Query Frame = 0


Query: 1   MPDYFISFQEMIFTSYESLNRKIEKLFNEVEEWNNILKEKNIPTLVDQDNQEPDNNEDPS 60
           +P YF  FQE+I  S E+LN K++K+  EVE    +LKEKN  T+ + +N+E D+N+   
Sbjct: 72  VPKYFFRFQELIMASNEALNLKMDKMLVEVEGLKKLLKEKNSQTVEETENKERDDNDGND 131

Query: 61  GSNGQSNDGK 71
           G N   N+G+
Sbjct: 132 GGNNLRNNGE 141

The following BLAST results are available for this feature:

BLAST of MELO3C028954 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8653550.1	8.0e-04	38.89	hypothetical protein Csa_006898, partial [Cucumis sativus]	[more]

BLAST of MELO3C028954 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C028954 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V8N4	6.6e-04	42.86	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of MELO3C028954 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 16..36
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 44..71
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 72..93
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 41..93

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C028954.1	MELO3C028954.1	mRNA