MELO3C028897 (gene) Melon (DHL92) v4

Overview
NameMELO3C028897
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionRetrotrans_gag domain-containing protein
Locationchr01: 28539044 .. 28540209 (-)
RNA-Seq ExpressionMELO3C028897
SyntenyMELO3C028897
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCGGGTTGATGGAAGAGTTAGTCTAAGATAACGTGAAGATCTCAAAAGTCGCCAAGTAAATGATCAAAGTCCTTGGAGACTCGCATGATAAAGAGATGTATGATCTTCTTGTTGAGGTAACTGACCTACGAAAGTTCGTGGAAGAGGAACTTCACGTCTTGTGGAAGGACGTCGACGAGGTACGTGTCGAATGTCAATCTAGACATGCTAGTAATGGTAATGCATCCATTAGCACATCATACATCGTTGTAGGCACCCACGGTATTAAAGTGCCAAAACCTAACATGTATAACAACACAAGGAATGCCACAATGGTGGAGAATTTCCTATTTGGCCTTGAGCAATATTATGAGGCCTTAGGAATCGTCGACGATGGTGCCAAAATCGCGAATGCCTCTAATTTCCTACACGAGTCGACACAACTATGGTAGCATAGGAAGCATGCGGAACGGAAGAAGGACCGCACAATCTTACGAACGTGGGAACAATTCAAGGTAGAACTCCGAAAGCACTTTGTTCTCCACAATGCTGACATGGAGGCACAAGGTAAGTTGAGGAGATTAAGGTAAACTGGTGGCATTCTCGAGTATATAAAGGAGTTCACTACTCTAATGTTGGAAATAGAAGATCTATCAGGCAAGGATGCTTCCTTTCATTTTAGAGACGGTCTTAAAGATTGGGAAAAAATTGAGCTCGATAGGTGCAACGTGCAAACGCTTGATGATGCTATTTCTACAGCCCAAGTACTCATTGACATTTCCTCCAAGGAGAAGAAGATCCACATAGATTAAGGAGATGGGTCTGAGCCGAAGAAAGAGGAGAACTTTAAACAAGATGAGAAGCATGGAAAGGCCTCGTTTACCAACAAAGGTATGACTCCTTTACCTTGAGTCTTATGTAATGATCCACATTAGACAAGAGACTGCCTAAAGAAGAACAAGTTGAGTGTAATGGTGGCCAATACACACGATGAAGAGGAGGCATCAGTGAAAAGGTCGGCATAGATAGATGCAATTCGATACTTAAGTGCAATGGACAGTGATTCCTCTAAAGAACCTCAAGAGAGAGGTTGATTGTATGTGGATGCCACACTCAATAACAAGGTTGCCTTAGCAATATTAGACACAGGCGCAACAAAAAATGTGATGGATCCTAAAGAGGC

mRNA sequence

ATGAGCGGGTTGATGGAAGAGTTAGTCTAAGATAACGTGAAGATCTCAAAAGTCGCCAAGTAAATGATCAAAGTCCTTGGAGACTCGCATGATAAAGAGATGTATGATCTTCTTGTTGAGGTAACTGACCTACGAAAGTTCGTGGAAGAGGAACTTCACGTCTTGTGGAAGGACGTCGACGAGGTACGTGTCGAATGTCAATCTAGACATGCTAGTAATGGTAATGCATCCATTAGCACATCATACATCGTTGTAGGCACCCACGGTATTAAAGTGCCAAAACCTAACATGTATAACAACACAAGGAATGCCACAATGGTGGAGAATTTCCTATTTGGCCTTGAGCAATATTATGAGGCCTTAGGAATCGTCGACGATGGTGCCAAAATCGCGAATGCCTCTAATTTCCTACACGAGTCGACACAACTATGGTAGCATAGGAAGCATGCGGAACGGAAGAAGGACCGCACAATCTTACGAACGTGGGAACAATTCAAGGTAGAACTCCGAAAGCACTTTGTTCTCCACAATGCTGACATGGAGGCACAAGGTAAGTTGAGGAGATTAAGGTAAACTGGTGGCATTCTCGAGTATATAAAGGAGTTCACTACTCTAATGTTGGAAATAGAAGATCTATCAGGCAAGGATGCTTCCTTTCATTTTAGAGACGGTCTTAAAGATTGGGAAAAAATTGAGCTCGATAGGTGCAACGTGCAAACGCTTGATGATGCTATTTCTACAGCCCAAGTACTCATTGACATTTCCTCCAAGGAGAAGAAGATCCACATAGATTAAGGAGATGGGTCTGAGCCGAAGAAAGAGGAGAACTTTAAACAAGATGAGAAGCATGGAAAGGCCTCGTTTACCAACAAAGGTATGACTCCTTTACCTTGAGTCTTATGTAATGATCCACATTAGACAAGAGACTGCCTAAAGAAGAACAAGTTGAGTGTAATGGTGGCCAATACACACGATGAAGAGGAGGCATCAGTGAAAAGGTCGGCATAGATAGATGCAATTCGATACTTAAGTGCAATGGACAGTGATTCCTCTAAAGAACCTCAAGAGAGAGGTTGATTGTATGTGGATGCCACACTCAATAACAAGGTTGCCTTAGCAATATTAGACACAGGCGCAACAAAAAATGTGATGGATCCTAAAGAGGC

Coding sequence (CDS)

ATGATCAAAGTCCTTGGAGACTCGCATGATAAAGAGATGTATGATCTTCTTGTTGAGGTAACTGACCTACGAAAGTTCGTGGAAGAGGAACTTCACGTCTTGTGGAAGGACGTCGACGAGGTACGTGTCGAATGTCAATCTAGACATGCTAGTAATGGTAATGCATCCATTAGCACATCATACATCGTTGTAGGCACCCACGGTATTAAAGTGCCAAAACCTAACATGTATAACAACACAAGGAATGCCACAATGGTGGAGAATTTCCTATTTGGCCTTGAGCAATATTATGAGGCCTTAGGAATCGTCGACGATGGTGCCAAAATCGCGAATGCCTCTAATTTCCTACACGAGTCGACACAACTATGGTAG

Protein sequence

MIKVLGDSHDKEMYDLLVEVTDLRKFVEEELHVLWKDVDEVRVECQSRHASNGNASISTSYIVVGTHGIKVPKPNMYNNTRNATMVENFLFGLEQYYEALGIVDDGAKIANASNFLHESTQLW
Homology
BLAST of MELO3C028897 vs. NCBI nr
Match: KAA0059692.1 (uncharacterized protein E6C27_scaffold54G001490 [Cucumis melo var. makuwa] >TYK26129.1 uncharacterized protein E5676_scaffold111G00490 [Cucumis melo var. makuwa])

HSP 1 Score: 229.6 bits (584), Expect = 1.5e-56
Identity = 113/120 (94.17%), Postives = 115/120 (95.83%), Query Frame = 0

Query: 1   MIKVLGDSHDKEMYDLLVEVTDLRKFVEEELHVLWKDVDEVRVECQSRHASNGNASISTS 60
           MIKV GDSHDKEMYDLLVEVTDLRKFVEEELHVLWKDVDEVR ECQSRHASNGNAS STS
Sbjct: 1   MIKVFGDSHDKEMYDLLVEVTDLRKFVEEELHVLWKDVDEVRAECQSRHASNGNASTSTS 60

Query: 61  YIVVGTHGIKVPKPNMYNNTRNATMVENFLFGLEQYYEALGIVDDGAKIANASNFLHEST 120
           YIVVGTHGIKVPK +MYN+TRNATMVENFLFGLEQYYE LGIVDDGAKIANASNFLHEST
Sbjct: 61  YIVVGTHGIKVPKFDMYNDTRNATMVENFLFGLEQYYEPLGIVDDGAKIANASNFLHEST 120

BLAST of MELO3C028897 vs. NCBI nr
Match: KAA0035960.1 (uncharacterized protein E6C27_scaffold56G001640 [Cucumis melo var. makuwa] >TYK30443.1 uncharacterized protein E5676_scaffold349G00560 [Cucumis melo var. makuwa])

HSP 1 Score: 213.8 bits (543), Expect = 8.5e-52
Identity = 106/123 (86.18%), Postives = 110/123 (89.43%), Query Frame = 0

Query: 1   MIKVLGDSHDKEMYDLLVEVTDLRKFVEEELHVLWKDVDEVRVECQSRHASNGNASISTS 60
           MIK LGDSH KEMYDLLVEVT+LRKFVEEELH L K+VDEVR EC SRHASNGNAS STS
Sbjct: 22  MIKDLGDSHGKEMYDLLVEVTNLRKFVEEELHALRKNVDEVRAECHSRHASNGNASTSTS 81

Query: 61  YIVVGTHGIKVPKPNMYNNTRNATMVENFLFGLEQYYEALGIVDDGAKIANASNFLHEST 120
             VVGTH IKVPKP+MYN TRNATMVENFLFGLEQYY+ALGIVDDGAKIANA NFLHES 
Sbjct: 82  CTVVGTHNIKVPKPDMYNGTRNATMVENFLFGLEQYYKALGIVDDGAKIANAPNFLHESA 141

Query: 121 QLW 124
           QLW
Sbjct: 142 QLW 144

BLAST of MELO3C028897 vs. NCBI nr
Match: KAA0035961.1 (uncharacterized protein E6C27_scaffold56G001660 [Cucumis melo var. makuwa] >TYK30442.1 uncharacterized protein E5676_scaffold349G00550 [Cucumis melo var. makuwa])

HSP 1 Score: 204.5 bits (519), Expect = 5.2e-49
Identity = 101/123 (82.11%), Postives = 108/123 (87.80%), Query Frame = 0

Query: 1   MIKVLGDSHDKEMYDLLVEVTDLRKFVEEELHVLWKDVDEVRVECQSRHASNGNASISTS 60
           MIKVLGDSH KEMYD+LVEVT+LRKFVEEELH L K+VDEVR E  SRHASNGNAS STS
Sbjct: 22  MIKVLGDSHGKEMYDILVEVTNLRKFVEEELHALRKNVDEVRAEWHSRHASNGNASTSTS 81

Query: 61  YIVVGTHGIKVPKPNMYNNTRNATMVENFLFGLEQYYEALGIVDDGAKIANASNFLHEST 120
             +VGTH IKVPKP+ YN TRNATMVENFLFGLEQYY+ALGI+DDGAKIANA NFL ES 
Sbjct: 82  CTMVGTHNIKVPKPDTYNGTRNATMVENFLFGLEQYYKALGIIDDGAKIANAPNFLRESA 141

Query: 121 QLW 124
           QLW
Sbjct: 142 QLW 144

BLAST of MELO3C028897 vs. NCBI nr
Match: KAA0050866.1 (uncharacterized protein E6C27_scaffold404G001380 [Cucumis melo var. makuwa])

HSP 1 Score: 118.6 bits (296), Expect = 3.7e-23
Identity = 63/130 (48.46%), Postives = 86/130 (66.15%), Query Frame = 0

Query: 1   MIKVLGDSHDKEMYDLLVEVTDLRKFVEEELHVLWKD-------VDEVRVECQSRHASNG 60
           MI+ +G +  KE+ +L   VT L+ FVE ELH L          +D + VEC+S+HA++ 
Sbjct: 86  MIEDVGQTFQKELKELASTVTTLKAFVEGELHDLHTKSISLETRLDALCVECRSKHATSH 145

Query: 61  NASISTSYIVVGTHGIKVPKPNMYNNTRNATMVENFLFGLEQYYEALGIVDDGAKIANAS 120
             S ST     GT  IKVPKP++YN  RNAT+V+NFLFGLE+Y+ ALG+ DD A+I +AS
Sbjct: 146 APSTSTHPTTSGTSNIKVPKPDVYNGVRNATVVDNFLFGLERYFVALGVRDDEARINHAS 205

Query: 121 NFLHESTQLW 124
            FL ++ QLW
Sbjct: 206 TFLRDAAQLW 215

BLAST of MELO3C028897 vs. NCBI nr
Match: TYK30387.1 (uncharacterized protein E5676_scaffold575G00690 [Cucumis melo var. makuwa])

HSP 1 Score: 115.5 bits (288), Expect = 3.2e-22
Identity = 61/130 (46.92%), Postives = 83/130 (63.85%), Query Frame = 0

Query: 1   MIKVLGDSHDKEMYDLLVEVTDLRKFVEEELHVLWKD-------VDEVRVECQSRHASNG 60
           MI+ +G +  KE+ +L   VT L+ FVE ELH L          +D + VEC+S+H  + 
Sbjct: 86  MIEDMGQTFQKELKELASTVTTLKAFVEGELHDLHTKSISFETRLDTLCVECRSKHLGSN 145

Query: 61  NASISTSYIVVGTHGIKVPKPNMYNNTRNATMVENFLFGLEQYYEALGIVDDGAKIANAS 120
             S ST     GT  IKVPKP++YN  RNAT+V+NFLFGLE+Y+ ALG+ DD A+I +A 
Sbjct: 146 APSTSTHPTTSGTSNIKVPKPDVYNGVRNATVVDNFLFGLERYFVALGVRDDEARINHAP 205

Query: 121 NFLHESTQLW 124
            FL ++ QLW
Sbjct: 206 TFLRDAAQLW 215

BLAST of MELO3C028897 vs. ExPASy TrEMBL
Match: A0A5D3DRU7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold111G00490 PE=4 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 7.3e-57
Identity = 113/120 (94.17%), Postives = 115/120 (95.83%), Query Frame = 0

Query: 1   MIKVLGDSHDKEMYDLLVEVTDLRKFVEEELHVLWKDVDEVRVECQSRHASNGNASISTS 60
           MIKV GDSHDKEMYDLLVEVTDLRKFVEEELHVLWKDVDEVR ECQSRHASNGNAS STS
Sbjct: 1   MIKVFGDSHDKEMYDLLVEVTDLRKFVEEELHVLWKDVDEVRAECQSRHASNGNASTSTS 60

Query: 61  YIVVGTHGIKVPKPNMYNNTRNATMVENFLFGLEQYYEALGIVDDGAKIANASNFLHEST 120
           YIVVGTHGIKVPK +MYN+TRNATMVENFLFGLEQYYE LGIVDDGAKIANASNFLHEST
Sbjct: 61  YIVVGTHGIKVPKFDMYNDTRNATMVENFLFGLEQYYEPLGIVDDGAKIANASNFLHEST 120

BLAST of MELO3C028897 vs. ExPASy TrEMBL
Match: A0A5A7SY30 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold349G00560 PE=4 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 4.1e-52
Identity = 106/123 (86.18%), Postives = 110/123 (89.43%), Query Frame = 0

Query: 1   MIKVLGDSHDKEMYDLLVEVTDLRKFVEEELHVLWKDVDEVRVECQSRHASNGNASISTS 60
           MIK LGDSH KEMYDLLVEVT+LRKFVEEELH L K+VDEVR EC SRHASNGNAS STS
Sbjct: 22  MIKDLGDSHGKEMYDLLVEVTNLRKFVEEELHALRKNVDEVRAECHSRHASNGNASTSTS 81

Query: 61  YIVVGTHGIKVPKPNMYNNTRNATMVENFLFGLEQYYEALGIVDDGAKIANASNFLHEST 120
             VVGTH IKVPKP+MYN TRNATMVENFLFGLEQYY+ALGIVDDGAKIANA NFLHES 
Sbjct: 82  CTVVGTHNIKVPKPDMYNGTRNATMVENFLFGLEQYYKALGIVDDGAKIANAPNFLHESA 141

Query: 121 QLW 124
           QLW
Sbjct: 142 QLW 144

BLAST of MELO3C028897 vs. ExPASy TrEMBL
Match: A0A5A7T2W8 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold349G00550 PE=4 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 2.5e-49
Identity = 101/123 (82.11%), Postives = 108/123 (87.80%), Query Frame = 0

Query: 1   MIKVLGDSHDKEMYDLLVEVTDLRKFVEEELHVLWKDVDEVRVECQSRHASNGNASISTS 60
           MIKVLGDSH KEMYD+LVEVT+LRKFVEEELH L K+VDEVR E  SRHASNGNAS STS
Sbjct: 22  MIKVLGDSHGKEMYDILVEVTNLRKFVEEELHALRKNVDEVRAEWHSRHASNGNASTSTS 81

Query: 61  YIVVGTHGIKVPKPNMYNNTRNATMVENFLFGLEQYYEALGIVDDGAKIANASNFLHEST 120
             +VGTH IKVPKP+ YN TRNATMVENFLFGLEQYY+ALGI+DDGAKIANA NFL ES 
Sbjct: 82  CTMVGTHNIKVPKPDTYNGTRNATMVENFLFGLEQYYKALGIIDDGAKIANAPNFLRESA 141

Query: 121 QLW 124
           QLW
Sbjct: 142 QLW 144

BLAST of MELO3C028897 vs. ExPASy TrEMBL
Match: A0A5A7U9J4 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold404G001380 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 1.8e-23
Identity = 63/130 (48.46%), Postives = 86/130 (66.15%), Query Frame = 0

Query: 1   MIKVLGDSHDKEMYDLLVEVTDLRKFVEEELHVLWKD-------VDEVRVECQSRHASNG 60
           MI+ +G +  KE+ +L   VT L+ FVE ELH L          +D + VEC+S+HA++ 
Sbjct: 86  MIEDVGQTFQKELKELASTVTTLKAFVEGELHDLHTKSISLETRLDALCVECRSKHATSH 145

Query: 61  NASISTSYIVVGTHGIKVPKPNMYNNTRNATMVENFLFGLEQYYEALGIVDDGAKIANAS 120
             S ST     GT  IKVPKP++YN  RNAT+V+NFLFGLE+Y+ ALG+ DD A+I +AS
Sbjct: 146 APSTSTHPTTSGTSNIKVPKPDVYNGVRNATVVDNFLFGLERYFVALGVRDDEARINHAS 205

Query: 121 NFLHESTQLW 124
            FL ++ QLW
Sbjct: 206 TFLRDAAQLW 215

BLAST of MELO3C028897 vs. ExPASy TrEMBL
Match: A0A5D3BWR0 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold293G00040 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 1.5e-22
Identity = 62/130 (47.69%), Postives = 85/130 (65.38%), Query Frame = 0

Query: 1   MIKVLGDSHDKEMYDLLVEVTDLRKFVEEELHVLWKD-------VDEVRVECQSRHASNG 60
           MI+ +G +  KE+ +L   VT L+ FVE ELH L          +D + VEC+S+HA++ 
Sbjct: 111 MIENMGRTFQKELKELSSTVTTLKAFVEGELHDLHTKSISLEMRLDALCVECRSKHATSY 170

Query: 61  NASISTSYIVVGTHGIKVPKPNMYNNTRNATMVENFLFGLEQYYEALGIVDDGAKIANAS 120
             S ST     GT  IKVPKP++YN  RNAT+V+NFLFGLE+Y+ ALG+ DD A+I +A 
Sbjct: 171 APSTSTHPTTSGTSNIKVPKPDVYNGVRNATLVDNFLFGLERYFVALGVRDDEARINHAL 230

Query: 121 NFLHESTQLW 124
            FL ++ QLW
Sbjct: 231 TFLRDAAQLW 240

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0059692.11.5e-5694.17uncharacterized protein E6C27_scaffold54G001490 [Cucumis melo var. makuwa] >TYK2... [more]
KAA0035960.18.5e-5286.18uncharacterized protein E6C27_scaffold56G001640 [Cucumis melo var. makuwa] >TYK3... [more]
KAA0035961.15.2e-4982.11uncharacterized protein E6C27_scaffold56G001660 [Cucumis melo var. makuwa] >TYK3... [more]
KAA0050866.13.7e-2348.46uncharacterized protein E6C27_scaffold404G001380 [Cucumis melo var. makuwa][more]
TYK30387.13.2e-2246.92uncharacterized protein E5676_scaffold575G00690 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3DRU77.3e-5794.17Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7SY304.1e-5286.18Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A5A7T2W82.5e-4982.11Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A5A7U9J41.8e-2348.46Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A5D3BWR01.5e-2247.69Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold29... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C028897.1MELO3C028897.1mRNA