MELO3C028879 (gene) Melon (DHL92) v4

Overview
NameMELO3C028879
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionGag/pol protein
Locationchr01: 27385323 .. 27385543 (+)
RNA-Seq ExpressionMELO3C028879
SyntenyMELO3C028879
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTACAAACTACGAGTTTTAGGACATAAATTCCAACACATAAATGTTTCGAGCTTCGGAGCTCATACTCTGGCATCGTCACACACACATTTTCCTAAAGTATAGGTCAGAAGCGCACTCGTTGGAGGGAGAACAAAGGTGCAACACGAAACGATCGAAAAGATGGCCAATGCTCTTCCAACGAGTGAAAAACGCTCATCTGGTGTCAGAAACCACTGA

mRNA sequence

ATGACTACAAACTACGAGTTTTAGGACATAAATTCCAACACATAAATGTTTCGAGCTTCGGAGCTCATACTCTGGCATCGTCACACACACATTTTCCTAAAGTATAGGTCAGAAGCGCACTCGTTGGAGGGAGAACAAAGGTGCAACACGAAACGATCGAAAAGATGGCCAATGCTCTTCCAACGAGTGAAAAACGCTCATCTGGTGTCAGAAACCACTGA

Coding sequence (CDS)

ATGTTTCGAGCTTCGGAGCTCATACTCTGGCATCGTCACACACACATTTTCCTAAAGTATAGGTCAGAAGCGCACTCGTTGGAGGGAGAACAAAGGTGCAACACGAAACGATCGAAAAGATGGCCAATGCTCTTCCAACGAGTGAAAAACGCTCATCTGGTGTCAGAAACCACT

Protein sequence

MFRASELILWHRHTHIFLKYRSEAHSLEGEQRCNTKRSKRWPMLFQRVKNAHLVSETT
Homology
[Close]
BLAST of MELO3C028879 vs. NCBI nr
Match: KAA0047411.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK14086.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 64.7 bits (156), Expect = 3.0e-07
Identity = 30/36 (83.33%), Postives = 32/36 (88.89%), Query Frame = 0 

Query: 23  EAHSLEGEQRCNTKRSKRWPMLFQRVKNAHLVSETT 59
           +A SLEGE RC+ KRSKRWPMLFQRV NAHLVSETT
Sbjct: 300 DASSLEGELRCHPKRSKRWPMLFQRVTNAHLVSETT 335

[Close]
BLAST of MELO3C028879 vs. ExPASy TrEMBL
Match: A0A5D3CUK8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold363G00690 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.5e-07
Identity = 30/36 (83.33%), Postives = 32/36 (88.89%), Query Frame = 0 

Query: 23  EAHSLEGEQRCNTKRSKRWPMLFQRVKNAHLVSETT 59
           +A SLEGE RC+ KRSKRWPMLFQRV NAHLVSETT
Sbjct: 300 DASSLEGELRCHPKRSKRWPMLFQRVTNAHLVSETT 335

[Close]
BLAST of MELO3C028879 vs. ExPASy TrEMBL
Match: A0A5A7U7P6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60G004060 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 7.5e-04
Identity = 24/36 (66.67%), Postives = 28/36 (77.78%), Query Frame = 0 

Query: 23  EAHSLEGEQRCNTKRSKRWPMLFQRVKNAHLVSETT 59
           +A SLE E +CN KRSKRWP+ FQRV NA +V ETT
Sbjct: 398 QASSLEEELKCNPKRSKRWPLRFQRVGNARIVLETT 433

The following BLAST results are available for this feature:
BLAST of MELO3C028879 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0047411.13.0e-0783.33gag/pol protein [Cucumis melo var. makuwa] >TYK14086.1 gag/pol protein [Cucumis ... [more]
BLAST of MELO3C028879 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C028879 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3CUK81.5e-0783.33Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold363G0069... [more]
A0A5A7U7P67.5e-0466.67Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
BLAST of MELO3C028879 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C028879.1MELO3C028879.1mRNA