MELO3C028837 (gene) Melon (DHL92) v4

Overview
NameMELO3C028837
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionProtein FAR1-RELATED SEQUENCE 4
Locationchr01: 24326234 .. 24327166 (-)
RNA-Seq ExpressionMELO3C028837
SyntenyMELO3C028837
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCACTGAATATAGGTTTTTCTTCTTTTGTTTCAAATGATGAAGTTATAAGAGACATCTCTTATTATTATGATTTGAAAGAAAAATGTTTATTTGAAAGTAAAAAAGTGCATTCAAAGTGTTTTTGCATAATAGCAGTGAAGAACAACTTTCAATTTAGGACTATAGAATCAAATTTGAAGTCTCTTGAATTTAGATGTCTGCAAGAAGGCTGCAAATGATATGTAAGGGCATCTCGTTATAAGAAGAGTGATTTGTGGATGCTACGAAAATAAATTTTCTGCTTCTCACATGCAAGCTTCTTCAACAGTAATTGGCAATTGTTTGATAGATGACTTTAGATTCATGTATACTGATCGTTCCATTCCTAAAGAGATTGTGCATAAGGCTCGTACAAATCTTGGAGTTAATATAAGTTACCTAGCTTGGAAGGCAAAAGAACATATGGTAAAGATATTACATGGTGACACAGTTGAATCATATGCATTGATTCCAATATTCTTTGATAAATTGGTTGAATCTAACCCAGGTATGATCAATTTTTTATATCAAATTTAAATTGATTTGCAGATAGATATGGATAGACTAATATCACAGTCTATCTAGATAGACCAATATTGACATCTTTTAGATTCTTTTTTGTTTGCGCTGATAGAAATGTGTTTTTAATTATTATAGGTACATGCAGTACTTTAGAAATGAATGATAATGGTCATTTCAAGTTTGCTTTATGGCTTTTGGTGCATCAATTGAGGGGTGGAAATATTGTAGACCTATTATTTATGTGGATGGGACATTTTTGAAGTGCAAGTTTAGTGGCATCCTATTAACAGCCTCATCATAAGATGTTAACAATTAAATCTTCCCTTTTGCTTTTGTCATTGTAGATTCTGAAAATAATGTATCATAAACATGGTTTTTTAAGAAGATAC

mRNA sequence

ATGTCACTGAATATAGGTTTTTCTTCTTTTGTTTCAAATGATGAAGTTATAAGAGACATCTCTTATTATTATGATTTGAAAGAAAAATGTTTATTTGAAAGTAAAAAAGTGCATTCAAAGTGTTTTTGCATAATAGCAGTGAAGAACAACTTTCAATTTAGGACTATAGAATCAAATTTGAAGTCTCTTGAATTTAGATGTCTGCAAGAAGGCTGCAAATGATATGTAAGGGCATCTCGTTATAAGAAGAGTGATTTGTGGATGCTACGAAAATAAATTTTCTGCTTCTCACATGCAAGCTTCTTCAACAGTAATTGGCAATTGTTTGATAGATGACTTTAGATTCATGTATACTGATCGTTCCATTCCTAAAGAGATTGTGCATAAGGCTCGTACAAATCTTGGAGTTAATATAAGTTACCTAGCTTGGAAGGCAAAAGAACATATGGTAAAGATATTACATGGTGACACAGTTGAATCATATGCATTGATTCCAATATTCTTTGATAAATTGGTTGAATCTAACCCAGGTACATGCAGTACTTTAGAAATGAATGATAATGGTCATTTCAAGTTTGCTTTATGGCTTTTGGTGCATCAATTGAGGGGTGGAAATATTGTAGACCTATTATTTATGTGGATGGGACATTTTTGAAGTGCAAGTTTAGTGGCATCCTATTAACAGCCTCATCATAAGATGTTAACAATTAAATCTTCCCTTTTGCTTTTGTCATTGTAGATTCTGAAAATAATGTATCATAAACATGGTTTTTTAAGAAGATAC

Coding sequence (CDS)

ATGCAAGCTTCTTCAACAGTAATTGGCAATTGTTTGATAGATGACTTTAGATTCATGTATACTGATCGTTCCATTCCTAAAGAGATTGTGCATAAGGCTCGTACAAATCTTGGAGTTAATATAAGTTACCTAGCTTGGAAGGCAAAAGAACATATGGTAAAGATATTACATGGTGACACAGTTGAATCATATGCATTGATTCCAATATTCTTTGATAAATTGGTTGAATCTAACCCAGGTACATGCAGTACTTTAGAAATGAATGATAATGGTCATTTCAAGTTTGCTTTATGGCTTTTGGTGCATCAATTGAGGGGTGGAAATATTGTAGACCTATTATTTATGTGGATGGGACATTTTTGA

Protein sequence

MQASSTVIGNCLIDDFRFMYTDRSIPKEIVHKARTNLGVNISYLAWKAKEHMVKILHGDTVESYALIPIFFDKLVESNPGTCSTLEMNDNGHFKFALWLLVHQLRGGNIVDLLFMWMGHF
Homology
[Close]
BLAST of MELO3C028837 vs. NCBI nr
Match: KAA0048538.1 (uncharacterized protein E6C27_scaffold61G001670 [Cucumis melo var. makuwa] >TYK28341.1 uncharacterized protein E5676_scaffold600G001760 [Cucumis melo var. makuwa])

HSP 1 Score: 191.4 bits (485), Expect = 4.4e-45
Identity = 92/109 (84.40%), Postives = 98/109 (89.91%), Query Frame = 0 

Query: 13  IDDFRFMYTDRSIPKEIVHKARTNLGVNISY-LAWKAKEHMVKILHGDTVESYALIPIFF 72
           IDDFRFM TDRSIPKEIVHK RTNLGVNISY  AW+ KEHMVKILHGDTVE YALIP FF
Sbjct: 121 IDDFRFMSTDRSIPKEIVHKTRTNLGVNISYQKAWRVKEHMVKILHGDTVELYALIPRFF 180

Query: 73  DKLVESNPGTCSTLEMNDNGHFKFALWLLVHQLRGGNIVDLLFMWMGHF 121
           DKLVESNPGTC+TLEM+D+GHFKF LWLLVHQL+GGNIVDLLF+ M  F
Sbjct: 181 DKLVESNPGTCTTLEMDDSGHFKFCLWLLVHQLKGGNIVDLLFLLMDIF 229

[Close]
BLAST of MELO3C028837 vs. NCBI nr
Match: KAA0060841.1 (hypothetical protein E6C27_scaffold137G00730 [Cucumis melo var. makuwa])

HSP 1 Score: 188.3 bits (477), Expect = 3.7e-44
Identity = 95/121 (78.51%), Postives = 100/121 (82.64%), Query Frame = 0 

Query: 1   MQASSTVIGNCLIDDFRFMYTDRSIPKEIVHKARTNLGVNISY-LAWKAKEHMVKILHGD 60
           MQASSTVIGN LIDDFRFM TDRSIPKEI HKARTNLGVNISY    +AKEHMVKILHGD
Sbjct: 1   MQASSTVIGNDLIDDFRFMSTDRSIPKEIGHKARTNLGVNISYQKTLRAKEHMVKILHGD 60

Query: 61  TVESYALIPIFFDKLVESNPGTCSTLEMNDNGHFKFALWLLVHQLRGGNIVDLLFMWMGH 120
           TVESY LIP FF+KLVESNPGTC  LEM+D+GHFKF        + GGNIVDLLFM MGH
Sbjct: 61  TVESYVLIPRFFNKLVESNPGTCRALEMDDSGHFKFCFMAFGASIGGGNIVDLLFMLMGH 120

[Close]
BLAST of MELO3C028837 vs. NCBI nr
Match: KAA0052073.1 (uncharacterized protein E6C27_scaffold578G00430 [Cucumis melo var. makuwa] >TYK00687.1 uncharacterized protein E5676_scaffold1371G00270 [Cucumis melo var. makuwa])

HSP 1 Score: 175.6 bits (444), Expect = 2.5e-40
Identity = 84/107 (78.50%), Postives = 93/107 (86.92%), Query Frame = 0 

Query: 1   MQASSTVIGNCLIDDFRFMYTDRSIPKEIVHKARTNLGVNISY-LAWKAKEHMVKILHGD 60
           MQASSTVI NCLIDDFRF+ TDRSIP+EIVHKARTNLGVNISY  AW+AKEHMVKILHGD
Sbjct: 1   MQASSTVISNCLIDDFRFISTDRSIPQEIVHKARTNLGVNISYQKAWRAKEHMVKILHGD 60

Query: 61  TVESYALIPIFFDKLVESNPGTCSTLEMNDNGHFKFALWLLVHQLRG 107
           TVE+YALIP FFDKLVESNPGTC+TLEM+++GHFKF        + G
Sbjct: 61  TVEAYALIPRFFDKLVESNPGTCTTLEMDNSGHFKFCFMAFGASIEG 107

[Close]
BLAST of MELO3C028837 vs. NCBI nr
Match: TYK02872.1 (protein FAR1-RELATED SEQUENCE 4 [Cucumis melo var. makuwa])

HSP 1 Score: 174.9 bits (442), Expect = 4.3e-40
Identity = 84/107 (78.50%), Postives = 91/107 (85.05%), Query Frame = 0 

Query: 1   MQASSTVIGNCLIDDFRFMYTDRSIPKEIVHKARTNLGVNISY-LAWKAKEHMVKILHGD 60
           MQASSTVI NCLIDDFRFM T+RSIP EIVHKARTNLG+NISY  AW+AKEHMVKILHGD
Sbjct: 1   MQASSTVIDNCLIDDFRFMSTNRSIPDEIVHKARTNLGINISYQKAWRAKEHMVKILHGD 60

Query: 61  TVESYALIPIFFDKLVESNPGTCSTLEMNDNGHFKFALWLLVHQLRG 107
           TVESYALIP FFDKLVESNPGTC+ LEM+D+GHFKF        + G
Sbjct: 61  TVESYALIPRFFDKLVESNPGTCTALEMDDSGHFKFCFMAFGASIEG 107

[Close]
BLAST of MELO3C028837 vs. NCBI nr
Match: KAA0037812.1 (protein FAR1-RELATED SEQUENCE 4 [Cucumis melo var. makuwa])

HSP 1 Score: 174.9 bits (442), Expect = 4.3e-40
Identity = 84/107 (78.50%), Postives = 91/107 (85.05%), Query Frame = 0 

Query: 1   MQASSTVIGNCLIDDFRFMYTDRSIPKEIVHKARTNLGVNISY-LAWKAKEHMVKILHGD 60
           MQASSTVI NCLIDDFRFM T+RSIP EIVHKARTNLG+NISY  AW+AKEHMVKILHGD
Sbjct: 1   MQASSTVIDNCLIDDFRFMSTNRSIPDEIVHKARTNLGINISYQKAWRAKEHMVKILHGD 60

Query: 61  TVESYALIPIFFDKLVESNPGTCSTLEMNDNGHFKFALWLLVHQLRG 107
           TVESYALIP FFDKLVESNPGTC+ LEM+D+GHFKF        + G
Sbjct: 61  TVESYALIPRFFDKLVESNPGTCTALEMDDSGHFKFCFMAFGASIEG 107

[Close]
BLAST of MELO3C028837 vs. ExPASy TrEMBL
Match: A0A5A7U017 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold600G001760 PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 2.1e-45
Identity = 92/109 (84.40%), Postives = 98/109 (89.91%), Query Frame = 0 

Query: 13  IDDFRFMYTDRSIPKEIVHKARTNLGVNISY-LAWKAKEHMVKILHGDTVESYALIPIFF 72
           IDDFRFM TDRSIPKEIVHK RTNLGVNISY  AW+ KEHMVKILHGDTVE YALIP FF
Sbjct: 121 IDDFRFMSTDRSIPKEIVHKTRTNLGVNISYQKAWRVKEHMVKILHGDTVELYALIPRFF 180

Query: 73  DKLVESNPGTCSTLEMNDNGHFKFALWLLVHQLRGGNIVDLLFMWMGHF 121
           DKLVESNPGTC+TLEM+D+GHFKF LWLLVHQL+GGNIVDLLF+ M  F
Sbjct: 181 DKLVESNPGTCTTLEMDDSGHFKFCLWLLVHQLKGGNIVDLLFLLMDIF 229

[Close]
BLAST of MELO3C028837 vs. ExPASy TrEMBL
Match: A0A5A7V4Y7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold137G00730 PE=4 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 1.8e-44
Identity = 95/121 (78.51%), Postives = 100/121 (82.64%), Query Frame = 0 

Query: 1   MQASSTVIGNCLIDDFRFMYTDRSIPKEIVHKARTNLGVNISY-LAWKAKEHMVKILHGD 60
           MQASSTVIGN LIDDFRFM TDRSIPKEI HKARTNLGVNISY    +AKEHMVKILHGD
Sbjct: 1   MQASSTVIGNDLIDDFRFMSTDRSIPKEIGHKARTNLGVNISYQKTLRAKEHMVKILHGD 60

Query: 61  TVESYALIPIFFDKLVESNPGTCSTLEMNDNGHFKFALWLLVHQLRGGNIVDLLFMWMGH 120
           TVESY LIP FF+KLVESNPGTC  LEM+D+GHFKF        + GGNIVDLLFM MGH
Sbjct: 61  TVESYVLIPRFFNKLVESNPGTCRALEMDDSGHFKFCFMAFGASIGGGNIVDLLFMLMGH 120

[Close]
BLAST of MELO3C028837 vs. ExPASy TrEMBL
Match: A0A5D3BN82 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1371G00270 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 1.2e-40
Identity = 84/107 (78.50%), Postives = 93/107 (86.92%), Query Frame = 0 

Query: 1   MQASSTVIGNCLIDDFRFMYTDRSIPKEIVHKARTNLGVNISY-LAWKAKEHMVKILHGD 60
           MQASSTVI NCLIDDFRF+ TDRSIP+EIVHKARTNLGVNISY  AW+AKEHMVKILHGD
Sbjct: 1   MQASSTVISNCLIDDFRFISTDRSIPQEIVHKARTNLGVNISYQKAWRAKEHMVKILHGD 60

Query: 61  TVESYALIPIFFDKLVESNPGTCSTLEMNDNGHFKFALWLLVHQLRG 107
           TVE+YALIP FFDKLVESNPGTC+TLEM+++GHFKF        + G
Sbjct: 61  TVEAYALIPRFFDKLVESNPGTCTTLEMDNSGHFKFCFMAFGASIEG 107

[Close]
BLAST of MELO3C028837 vs. ExPASy TrEMBL
Match: A0A5A7T2W2 (Protein FAR1-RELATED SEQUENCE 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold918G00260 PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 2.1e-40
Identity = 84/107 (78.50%), Postives = 91/107 (85.05%), Query Frame = 0 

Query: 1   MQASSTVIGNCLIDDFRFMYTDRSIPKEIVHKARTNLGVNISY-LAWKAKEHMVKILHGD 60
           MQASSTVI NCLIDDFRFM T+RSIP EIVHKARTNLG+NISY  AW+AKEHMVKILHGD
Sbjct: 1   MQASSTVIDNCLIDDFRFMSTNRSIPDEIVHKARTNLGINISYQKAWRAKEHMVKILHGD 60

Query: 61  TVESYALIPIFFDKLVESNPGTCSTLEMNDNGHFKFALWLLVHQLRG 107
           TVESYALIP FFDKLVESNPGTC+ LEM+D+GHFKF        + G
Sbjct: 61  TVESYALIPRFFDKLVESNPGTCTALEMDDSGHFKFCFMAFGASIEG 107

[Close]
BLAST of MELO3C028837 vs. ExPASy TrEMBL
Match: A0A5D3BVN2 (Protein FAR1-RELATED SEQUENCE 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold968G00010 PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 2.1e-40
Identity = 84/107 (78.50%), Postives = 91/107 (85.05%), Query Frame = 0 

Query: 1   MQASSTVIGNCLIDDFRFMYTDRSIPKEIVHKARTNLGVNISY-LAWKAKEHMVKILHGD 60
           MQASSTVI NCLIDDFRFM T+RSIP EIVHKARTNLG+NISY  AW+AKEHMVKILHGD
Sbjct: 1   MQASSTVIDNCLIDDFRFMSTNRSIPDEIVHKARTNLGINISYQKAWRAKEHMVKILHGD 60

Query: 61  TVESYALIPIFFDKLVESNPGTCSTLEMNDNGHFKFALWLLVHQLRG 107
           TVESYALIP FFDKLVESNPGTC+ LEM+D+GHFKF        + G
Sbjct: 61  TVESYALIPRFFDKLVESNPGTCTALEMDDSGHFKFCFMAFGASIEG 107

The following BLAST results are available for this feature:
BLAST of MELO3C028837 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0048538.14.4e-4584.40uncharacterized protein E6C27_scaffold61G001670 [Cucumis melo var. makuwa] >TYK2... [more]
KAA0060841.13.7e-4478.51hypothetical protein E6C27_scaffold137G00730 [Cucumis melo var. makuwa][more]
KAA0052073.12.5e-4078.50uncharacterized protein E6C27_scaffold578G00430 [Cucumis melo var. makuwa] >TYK0... [more]
TYK02872.14.3e-4078.50protein FAR1-RELATED SEQUENCE 4 [Cucumis melo var. makuwa][more]
KAA0037812.14.3e-4078.50protein FAR1-RELATED SEQUENCE 4 [Cucumis melo var. makuwa][more]
BLAST of MELO3C028837 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C028837 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7U0172.1e-4584.40Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7V4Y71.8e-4478.51Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3BN821.2e-4078.50Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7T2W22.1e-4078.50Protein FAR1-RELATED SEQUENCE 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... [more]
A0A5D3BVN22.1e-4078.50Protein FAR1-RELATED SEQUENCE 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
BLAST of MELO3C028837 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C028837.1MELO3C028837.1mRNA