MELO3C028832 (gene) Melon (DHL92) v4

Overview
NameMELO3C028832
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionNBS-LRR type resistance protein
Locationchr01: 24103615 .. 24103857 (-)
RNA-Seq ExpressionMELO3C028832
SyntenyMELO3C028832
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTAGACAACCACTCTCTGAGGATGAGATATGCGATCAGGTGTTGGGTAAATGACCAGGCTACTCAAAGGGCCTTGGTTGGGGACCCTAGCCGAAAGCCTGCAAGGCGAAAAATGCAAACAGTTCCTCAACATCATGTTCGCAGTCCACAGAAAGAAAGATTCAATTACAAGCTAAGCTTAATCAAGCTTTGGAACAAATTGAATGGATTGAAGAGTAGACAAGAAATCACCAAGCGTTAG

mRNA sequence

ATGGTAGACAACCACTCTCTGAGGATGAGATATGCGATCAGGTGTTGGGTAAATGACCAGGCTACTCAAAGGGCCTTGGTTGGGGACCCTAGCCGAAAGCCTGCAAGGCGAAAAATGCAAACAGTTCCTCAACATCATGTTCGCAGTCCACAGAAAGAAAGATTCAATTACAAGCTAAGCTTAATCAAGCTTTGGAACAAATTGAATGGATTGAAGAGTAGACAAGAAATCACCAAGCGTTAG

Coding sequence (CDS)

ATGGTAGACAACCACTCTCTGAGGATGAGATATGCGATCAGGTGTTGGGTAAATGACCAGGCTACTCAAAGGGCCTTGGTTGGGGACCCTAGCCGAAAGCCTGCAAGGCGAAAAATGCAAACAGTTCCTCAACATCATGTTCGCAGTCCACAGAAAGAAAGATTCAATTACAAGCTAAGCTTAATCAAGCTTTGGAACAAATTGAATGGATTGAAGAGTAGACAAGAAATCACCAAGCGTTAG

Protein sequence

MVDNHSLRMRYAIRCWVNDQATQRALVGDPSRKPARRKMQTVPQHHVRSPQKERFNYKLSLIKLWNKLNGLKSRQEITKR
Homology
BLAST of MELO3C028832 vs. NCBI nr
Match: KAA0042212.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 160.6 bits (405), Expect = 5.6e-36
Identity = 78/80 (97.50%), Postives = 79/80 (98.75%), Query Frame = 0

Query: 1  MVDNHSLRMRYAIRCWVNDQATQRALVGDPSRKPARRKMQTVPQHHVRSPQKERFNYKLS 60
          MVD+HSLRMRYAIRCWVNDQATQ ALVGDPSRKPARRKMQTVPQHHVRSPQKERFNYKLS
Sbjct: 1  MVDSHSLRMRYAIRCWVNDQATQGALVGDPSRKPARRKMQTVPQHHVRSPQKERFNYKLS 60

Query: 61 LIKLWNKLNGLKSRQEITKR 81
          LIKLWNKLNGLKSRQEITKR
Sbjct: 61 LIKLWNKLNGLKSRQEITKR 80

BLAST of MELO3C028832 vs. NCBI nr
Match: KAA0047913.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 124.8 bits (312), Expect = 3.4e-25
Identity = 61/72 (84.72%), Postives = 67/72 (93.06%), Query Frame = 0

Query: 9  MRYAIRCWVNDQATQRALVGDPSRKPARRKMQTVPQHHVRSPQKERFNYKLSLIKLWNKL 68
          MRYAIRCWV+DQATQ+ALVGDP+RKPARR++Q VPQ HV SPQKERFNYKLSLIK WN+L
Sbjct: 1  MRYAIRCWVDDQATQKALVGDPNRKPARRQVQAVPQCHVCSPQKERFNYKLSLIKHWNEL 60

Query: 69 NGLKSRQEITKR 81
          NGLKS QEITKR
Sbjct: 61 NGLKSIQEITKR 72

BLAST of MELO3C028832 vs. NCBI nr
Match: KAA0043150.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa] >TYK12315.1 NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 120.2 bits (300), Expect = 8.3e-24
Identity = 57/79 (72.15%), Postives = 70/79 (88.61%), Query Frame = 0

Query: 2   VDNHSLRMRYAIRCWVNDQATQRALVGDPSRKPARRKMQTVPQHHVRSPQKERFNYKLSL 61
           V +HSL MRY I+CW++D+AT++ALVGDPSR+PA+R+++ VP+ HV SPQKERFNYKLSL
Sbjct: 242 VVSHSLGMRYVIKCWIDDKATKKALVGDPSRRPAKRRVRAVPRRHVHSPQKERFNYKLSL 301

Query: 62  IKLWNKLNGLKSRQEITKR 81
           IKLW   NGLKSRQEITKR
Sbjct: 302 IKLW---NGLKSRQEITKR 317

BLAST of MELO3C028832 vs. NCBI nr
Match: KAA0048153.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 110.9 bits (276), Expect = 5.1e-21
Identity = 55/78 (70.51%), Postives = 66/78 (84.62%), Query Frame = 0

Query: 2   VDNHSLRMRYAIRCWVNDQATQRALVGDPSRKPARRKMQTVPQHHVRSPQKERFNYKLSL 61
           V +HSLRMRYAIRCWV+DQATQ+ALVGDPSR+PA R++Q V +H VRSPQK+R NYKL+ 
Sbjct: 871 VVSHSLRMRYAIRCWVDDQATQKALVGDPSRRPAERQVQAVRRHLVRSPQKKRLNYKLNF 930

Query: 62  IKLWNKLNGLKSRQEITK 80
           +KLW   NGLK + EITK
Sbjct: 931 MKLW---NGLKYKIEITK 945

BLAST of MELO3C028832 vs. NCBI nr
Match: KAA0048671.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 109.8 bits (273), Expect = 1.1e-20
Identity = 54/78 (69.23%), Postives = 65/78 (83.33%), Query Frame = 0

Query: 2   VDNHSLRMRYAIRCWVNDQATQRALVGDPSRKPARRKMQTVPQHHVRSPQKERFNYKLSL 61
           V +HSLRMRYAIRCWV+DQATQ+ALVGDPSR+PA R++Q V +H VRSP K+R NYKL+ 
Sbjct: 50  VVSHSLRMRYAIRCWVDDQATQKALVGDPSRRPAERQVQAVRRHFVRSPHKKRLNYKLNF 109

Query: 62  IKLWNKLNGLKSRQEITK 80
           +KLW   NGLK + EITK
Sbjct: 110 MKLW---NGLKYKIEITK 124

BLAST of MELO3C028832 vs. ExPASy TrEMBL
Match: A0A5A7TFK5 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67G007230 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 2.7e-36
Identity = 78/80 (97.50%), Postives = 79/80 (98.75%), Query Frame = 0

Query: 1  MVDNHSLRMRYAIRCWVNDQATQRALVGDPSRKPARRKMQTVPQHHVRSPQKERFNYKLS 60
          MVD+HSLRMRYAIRCWVNDQATQ ALVGDPSRKPARRKMQTVPQHHVRSPQKERFNYKLS
Sbjct: 1  MVDSHSLRMRYAIRCWVNDQATQGALVGDPSRKPARRKMQTVPQHHVRSPQKERFNYKLS 60

Query: 61 LIKLWNKLNGLKSRQEITKR 81
          LIKLWNKLNGLKSRQEITKR
Sbjct: 61 LIKLWNKLNGLKSRQEITKR 80

BLAST of MELO3C028832 vs. ExPASy TrEMBL
Match: A0A5A7TWE6 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G001950 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 1.6e-25
Identity = 61/72 (84.72%), Postives = 67/72 (93.06%), Query Frame = 0

Query: 9  MRYAIRCWVNDQATQRALVGDPSRKPARRKMQTVPQHHVRSPQKERFNYKLSLIKLWNKL 68
          MRYAIRCWV+DQATQ+ALVGDP+RKPARR++Q VPQ HV SPQKERFNYKLSLIK WN+L
Sbjct: 1  MRYAIRCWVDDQATQKALVGDPNRKPARRQVQAVPQCHVCSPQKERFNYKLSLIKHWNEL 60

Query: 69 NGLKSRQEITKR 81
          NGLKS QEITKR
Sbjct: 61 NGLKSIQEITKR 72

BLAST of MELO3C028832 vs. ExPASy TrEMBL
Match: A0A5A7TIJ3 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G00830 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 4.0e-24
Identity = 57/79 (72.15%), Postives = 70/79 (88.61%), Query Frame = 0

Query: 2   VDNHSLRMRYAIRCWVNDQATQRALVGDPSRKPARRKMQTVPQHHVRSPQKERFNYKLSL 61
           V +HSL MRY I+CW++D+AT++ALVGDPSR+PA+R+++ VP+ HV SPQKERFNYKLSL
Sbjct: 242 VVSHSLGMRYVIKCWIDDKATKKALVGDPSRRPAKRRVRAVPRRHVHSPQKERFNYKLSL 301

Query: 62  IKLWNKLNGLKSRQEITKR 81
           IKLW   NGLKSRQEITKR
Sbjct: 302 IKLW---NGLKSRQEITKR 317

BLAST of MELO3C028832 vs. ExPASy TrEMBL
Match: A0A5A7TX19 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold63G00520 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 2.4e-21
Identity = 55/78 (70.51%), Postives = 66/78 (84.62%), Query Frame = 0

Query: 2   VDNHSLRMRYAIRCWVNDQATQRALVGDPSRKPARRKMQTVPQHHVRSPQKERFNYKLSL 61
           V +HSLRMRYAIRCWV+DQATQ+ALVGDPSR+PA R++Q V +H VRSPQK+R NYKL+ 
Sbjct: 871 VVSHSLRMRYAIRCWVDDQATQKALVGDPSRRPAERQVQAVRRHLVRSPQKKRLNYKLNF 930

Query: 62  IKLWNKLNGLKSRQEITK 80
           +KLW   NGLK + EITK
Sbjct: 931 MKLW---NGLKYKIEITK 945

BLAST of MELO3C028832 vs. ExPASy TrEMBL
Match: A0A5A7U512 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold670G00200 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 5.4e-21
Identity = 54/78 (69.23%), Postives = 65/78 (83.33%), Query Frame = 0

Query: 2   VDNHSLRMRYAIRCWVNDQATQRALVGDPSRKPARRKMQTVPQHHVRSPQKERFNYKLSL 61
           V +HSLRMRYAIRCWV+DQATQ+ALVGDPSR+PA R++Q V +H VRSP K+R NYKL+ 
Sbjct: 50  VVSHSLRMRYAIRCWVDDQATQKALVGDPSRRPAERQVQAVRRHFVRSPHKKRLNYKLNF 109

Query: 62  IKLWNKLNGLKSRQEITK 80
           +KLW   NGLK + EITK
Sbjct: 110 MKLW---NGLKYKIEITK 124

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0042212.15.6e-3697.50NBS-LRR type resistance protein [Cucumis melo var. makuwa][more]
KAA0047913.13.4e-2584.72NBS-LRR type resistance protein [Cucumis melo var. makuwa][more]
KAA0043150.18.3e-2472.15NBS-LRR type resistance protein [Cucumis melo var. makuwa] >TYK12315.1 NBS-LRR t... [more]
KAA0048153.15.1e-2170.51reverse transcriptase [Cucumis melo var. makuwa][more]
KAA0048671.11.1e-2069.23NBS-LRR type resistance protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7TFK52.7e-3697.50NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... [more]
A0A5A7TWE61.6e-2584.72NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... [more]
A0A5A7TIJ34.0e-2472.15NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
A0A5A7TX192.4e-2170.51Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold63... [more]
A0A5A7U5125.4e-2169.23NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 28..50

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C028832.1MELO3C028832.1mRNA