MELO3C028829.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C028829.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionMediator of RNA polymerase II transcription subunit 12-like isoform X1
Locationchr01: 24058896 .. 24059598 (-)
RNA-Seq ExpressionMELO3C028829.jh1
SyntenyMELO3C028829.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDSstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATAACAATAGGAGTTTAATTCAACAATTTGATATGGATGTGACTCAAGAATATATCCACTGGTATAATAATATTACGAGGCATTACATCACTCGACCAAGAGCAGTCGTGGGTCAATTGGTACATATTTAAATATTGTATAATTACTTAAATTATTTACTCAATTAAATATTTCTAATTCTTTTTTACAATTCACAGAGATCGAACAATGCAAGACTTCGTGATGTTGCAGATGATCCACAACAAGTTCTTGATATATGTAATAATAATGAGAGATACATGGAGGAGATACATAATATGTACGATCTATCTATTATACCTCCACCAGTTCATAGAGAAGGTGTCTGAGTGGAAAAAGCTAAACTCGATGAAGTTTACCATAATGTGGAAGAAGTGCCTCCTATGACACAAGCACAAAGCCTAATTGGTTAAGGTAGTCCAATGATGATGATGCTAACATTTGGTGCAGGATATTGTGATTCTGAGGTTGGTACAAGGATATTATGATTTAGGGGCCGGTCCATCGTCTTTATACATTGATGTCGGTCCATCAAATTCTTACATGCCTGGACACGGACGTGGCTATCGAGAACACAACGAATATCTGTACTATGAAGTACCTGCAGAGATATCAGATTGACAAGGGTACCAACAAGAACAAGGGAACCAAGAGGAACCAGAACAACATATATTTCAGAGTCGAC

mRNA sequence

ATAACAATAGGAGTTTAATTCAACAATTTGATATGGATGTGACTCAAGAATATATCCACTGGTATAATAATATTACGAGGCATTACATCACTCGACCAAGAGCAGTCGTGGGTCAATTGAGATCGAACAATGCAAGACTTCGTGATGTTGCAGATGATCCACAACAAGTTCTTGATATATGTAATAATAATGAGAGATACATGGAGGAGATACATAATATGTACGATCTATCTATTATACCTCCACCAGTTCATAGAGAAGGTGTCTGAGTGGAAAAAGCTAAACTCGATGAAGTTTACCATAATGTGGAAGAAGTGCCTCCTATGACACAAGCACAAAGCCTAATTGGTTAAGGTAGTCCAATGATGATGATGCTAACATTTGGTGCAGGATATTGTGATTCTGAGGTTGGTACAAGGATATTATGATTTAGGGGCCGGTCCATCGTCTTTATACATTGATGTCGGTCCATCAAATTCTTACATGCCTGGACACGGACGTGGCTATCGAGAACACAACGAATATCTGTACTATGAAGTACCTGCAGAGATATCAGATTGACAAGGGTACCAACAAGAACAAGGGAACCAAGAGGAACCAGAACAACATATATTTCAGAGTCGAC

Coding sequence (CDS)

ATGGATGTGACTCAAGAATATATCCACTGGTATAATAATATTACGAGGCATTACATCACTCGACCAAGAGCAGTCGTGGGTCAATTGAGATCGAACAATGCAAGACTTCGTGATGTTGCAGATGATCCACAACAAGTTCTTGATATATGTAATAATAATGAGAGATACATGGAGGAGATACATAATATGTACGATCTATCTATTATACCTCCACCAGTTCATAGAGAAGGTGTCTGA

Protein sequence

MDVTQEYIHWYNNITRHYITRPRAVVGQLRSNNARLRDVADDPQQVLDICNNNERYMEEIHNMYDLSIIPPPVHREGV
Homology
[Close]
BLAST of MELO3C028829.jh1 vs. NCBI nr
Match: TYK08229.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 144 bits (362), Expect = 4.41e-42
Identity = 67/78 (85.90%), Postives = 71/78 (91.03%), Query Frame = 0 

Query: 1  MDVTQEYIHWYNNITRHYITRPRAVVGQLRSNNARLRDVADDPQQVLDICNNNERYMEEI 60
          MDVTQ+YIHWYNNITR YITRP A VG LRSNNA+LRDVADDPQQVLDICNNNERY+EEI
Sbjct: 1  MDVTQKYIHWYNNITRLYITRPGAAVGHLRSNNAKLRDVADDPQQVLDICNNNERYIEEI 60

Query: 61 HNMYDLSIIPPPVHREGV 78
          HNMYDL I+PPPVHR  V
Sbjct: 61 HNMYDLPIVPPPVHRGRV 78

[Close]
BLAST of MELO3C028829.jh1 vs. NCBI nr
Match: KAA0038951.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 147 bits (372), Expect = 1.19e-41
Identity = 69/78 (88.46%), Postives = 73/78 (93.59%), Query Frame = 0 

Query: 1   MDVTQEYIHWYNNITRHYITRPRAVVGQLRSNNARLRDVADDPQQVLDICNNNERYMEEI 60
           +DVTQEYIHWYNNITR YITRPRA VG LRSNNARLRDVADDPQQVL+ICNNN+RYMEEI
Sbjct: 120 IDVTQEYIHWYNNITRLYITRPRAAVGHLRSNNARLRDVADDPQQVLNICNNNKRYMEEI 179

Query: 61  HNMYDLSIIPPPVHREGV 78
           HNMYDLSI+PPPVHR  V
Sbjct: 180 HNMYDLSIVPPPVHRGRV 197

[Close]
BLAST of MELO3C028829.jh1 vs. NCBI nr
Match: TYK11193.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 145 bits (365), Expect = 1.07e-40
Identity = 68/78 (87.18%), Postives = 72/78 (92.31%), Query Frame = 0 

Query: 1   MDVTQEYIHWYNNITRHYITRPRAVVGQLRSNNARLRDVADDPQQVLDICNNNERYMEEI 60
           +DVTQEYIHWYNNITR YITRP A VG LRSNNARLRDVADDPQQVL+ICNNN+RYMEEI
Sbjct: 111 IDVTQEYIHWYNNITRLYITRPGAAVGHLRSNNARLRDVADDPQQVLNICNNNKRYMEEI 170

Query: 61  HNMYDLSIIPPPVHREGV 78
           HNMYDLSI+PPPVHR  V
Sbjct: 171 HNMYDLSIVPPPVHRGRV 188

[Close]
BLAST of MELO3C028829.jh1 vs. NCBI nr
Match: KAA0065673.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 133 bits (335), Expect = 5.01e-38
Identity = 64/78 (82.05%), Postives = 68/78 (87.18%), Query Frame = 0 

Query: 1  MDVTQEYIHWYNNITRHYITRPRAVVGQLRSNNARLRDVADDPQQVLDICNNNERYMEEI 60
          MDVTQ+YIHWYNNITR YITRP    G  RSNNA+LRDVADDPQQVLDICNNNERY+EEI
Sbjct: 1  MDVTQKYIHWYNNITRLYITRP----GAARSNNAKLRDVADDPQQVLDICNNNERYIEEI 60

Query: 61 HNMYDLSIIPPPVHREGV 78
          HNMYDL I+PPPVHR  V
Sbjct: 61 HNMYDLPIVPPPVHRGRV 74

[Close]
BLAST of MELO3C028829.jh1 vs. NCBI nr
Match: TYK04204.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 131 bits (329), Expect = 1.57e-37
Identity = 61/78 (78.21%), Postives = 66/78 (84.62%), Query Frame = 0 

Query: 1  MDVTQEYIHWYNNITRHYITRPRAVVGQLRSNNARLRDVADDPQQVLDICNNNERYMEEI 60
          MDVTQEYIHWYNN+ R YITR    VG LRSNNARLRDV DD QQVLDICNNNERY++EI
Sbjct: 12 MDVTQEYIHWYNNVMRLYITRSGVAVGHLRSNNARLRDVTDDSQQVLDICNNNERYIDEI 71

Query: 61 HNMYDLSIIPPPVHREGV 78
          +NMYDL I+PPPVHR  V
Sbjct: 72 YNMYDLPIVPPPVHRGRV 89

[Close]
BLAST of MELO3C028829.jh1 vs. ExPASy TrEMBL
Match: A0A5D3CD18 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1503G00530 PE=4 SV=1)

HSP 1 Score: 144 bits (362), Expect = 2.13e-42
Identity = 67/78 (85.90%), Postives = 71/78 (91.03%), Query Frame = 0 

Query: 1  MDVTQEYIHWYNNITRHYITRPRAVVGQLRSNNARLRDVADDPQQVLDICNNNERYMEEI 60
          MDVTQ+YIHWYNNITR YITRP A VG LRSNNA+LRDVADDPQQVLDICNNNERY+EEI
Sbjct: 1  MDVTQKYIHWYNNITRLYITRPGAAVGHLRSNNAKLRDVADDPQQVLDICNNNERYIEEI 60

Query: 61 HNMYDLSIIPPPVHREGV 78
          HNMYDL I+PPPVHR  V
Sbjct: 61 HNMYDLPIVPPPVHRGRV 78

[Close]
BLAST of MELO3C028829.jh1 vs. ExPASy TrEMBL
Match: A0A5A7TBF8 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold84G00270 PE=4 SV=1)

HSP 1 Score: 147 bits (372), Expect = 5.77e-42
Identity = 69/78 (88.46%), Postives = 73/78 (93.59%), Query Frame = 0 

Query: 1   MDVTQEYIHWYNNITRHYITRPRAVVGQLRSNNARLRDVADDPQQVLDICNNNERYMEEI 60
           +DVTQEYIHWYNNITR YITRPRA VG LRSNNARLRDVADDPQQVL+ICNNN+RYMEEI
Sbjct: 120 IDVTQEYIHWYNNITRLYITRPRAAVGHLRSNNARLRDVADDPQQVLNICNNNKRYMEEI 179

Query: 61  HNMYDLSIIPPPVHREGV 78
           HNMYDLSI+PPPVHR  V
Sbjct: 180 HNMYDLSIVPPPVHRGRV 197

[Close]
BLAST of MELO3C028829.jh1 vs. ExPASy TrEMBL
Match: A0A5D3CH23 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold227G00320 PE=4 SV=1)

HSP 1 Score: 145 bits (365), Expect = 5.20e-41
Identity = 68/78 (87.18%), Postives = 72/78 (92.31%), Query Frame = 0 

Query: 1   MDVTQEYIHWYNNITRHYITRPRAVVGQLRSNNARLRDVADDPQQVLDICNNNERYMEEI 60
           +DVTQEYIHWYNNITR YITRP A VG LRSNNARLRDVADDPQQVL+ICNNN+RYMEEI
Sbjct: 111 IDVTQEYIHWYNNITRLYITRPGAAVGHLRSNNARLRDVADDPQQVLNICNNNKRYMEEI 170

Query: 61  HNMYDLSIIPPPVHREGV 78
           HNMYDLSI+PPPVHR  V
Sbjct: 171 HNMYDLSIVPPPVHRGRV 188

[Close]
BLAST of MELO3C028829.jh1 vs. ExPASy TrEMBL
Match: A0A5A7VBU8 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold90G001370 PE=4 SV=1)

HSP 1 Score: 133 bits (335), Expect = 2.43e-38
Identity = 64/78 (82.05%), Postives = 68/78 (87.18%), Query Frame = 0 

Query: 1  MDVTQEYIHWYNNITRHYITRPRAVVGQLRSNNARLRDVADDPQQVLDICNNNERYMEEI 60
          MDVTQ+YIHWYNNITR YITRP    G  RSNNA+LRDVADDPQQVLDICNNNERY+EEI
Sbjct: 1  MDVTQKYIHWYNNITRLYITRP----GAARSNNAKLRDVADDPQQVLDICNNNERYIEEI 60

Query: 61 HNMYDLSIIPPPVHREGV 78
          HNMYDL I+PPPVHR  V
Sbjct: 61 HNMYDLPIVPPPVHRGRV 74

[Close]
BLAST of MELO3C028829.jh1 vs. ExPASy TrEMBL
Match: A0A5D3BYZ0 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold24967G00020 PE=4 SV=1)

HSP 1 Score: 131 bits (329), Expect = 7.59e-38
Identity = 61/78 (78.21%), Postives = 66/78 (84.62%), Query Frame = 0 

Query: 1  MDVTQEYIHWYNNITRHYITRPRAVVGQLRSNNARLRDVADDPQQVLDICNNNERYMEEI 60
          MDVTQEYIHWYNN+ R YITR    VG LRSNNARLRDV DD QQVLDICNNNERY++EI
Sbjct: 12 MDVTQEYIHWYNNVMRLYITRSGVAVGHLRSNNARLRDVTDDSQQVLDICNNNERYIDEI 71

Query: 61 HNMYDLSIIPPPVHREGV 78
          +NMYDL I+PPPVHR  V
Sbjct: 72 YNMYDLPIVPPPVHRGRV 89

The following BLAST results are available for this feature:
BLAST of MELO3C028829.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK08229.14.41e-4285.90GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var.... [more]
KAA0038951.11.19e-4188.46mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... [more]
TYK11193.11.07e-4087.18mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... [more]
KAA0065673.15.01e-3882.05GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var.... [more]
TYK04204.11.57e-3778.21mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... [more]
BLAST of MELO3C028829.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C028829.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3CD182.13e-4285.90GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va... [more]
A0A5A7TBF85.77e-4288.46Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... [more]
A0A5D3CH235.20e-4187.18Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... [more]
A0A5A7VBU82.43e-3882.05GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va... [more]
A0A5D3BYZ07.59e-3878.21Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... [more]
BLAST of MELO3C028829.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C028829.jh1.t1MELO3C028829.jh1.t1mRNA