MELO3C028822 (gene) Melon (DHL92) v4

Overview


Name	MELO3C028822
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	PMD domain-containing protein
Location	chr01: 22808534 .. 22809266 (-)
RNA-Seq Expression	MELO3C028822
Synteny	MELO3C028822

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGTTCCTGTTATCTATTTTCTTGCTGTGGAAATACTTGGATCATAACATCATATAGTCCGTATCGATTTGGACGGCAATTTGGCTTTTTCCAAGATATCCCTAATGATATAGAGGCCATGCCACCTGCGATCACACCAGATAATATGTTACACCACTGGAGGATATGTACGAGGCATAATACTTTAACTGAGTTATACTTGCCTGCCCGTTCGTTAGAGCCTTGCAAGCATGTGACGTAGCGATTTACAGACTGGTGGTCCTTGAGGCACGGAACCTATTTTGAGGATAACATACATTATTTGGTGAGTAGTGTCATTCCTCCCCCTTCACAACCCAAACTACCCAAGAACCGAGGAACCAACCTGGGTGGTAAAGAAATTCGCCTGGTTGAGGCAATGGCTGCTACTCTCGAAGAGGAGATAAATGAGCATAAAGATGAGAGCGATAGCAGCAAAAGTGATCGTCATTGGAAGAGACCTTTGAAGAAAGCAAAGGTATCAAGTGATGATCCCGACCAAAGGGGTTCAAGTGCTTTGGGAGTCCCTAATATTCCACCACTGGTTTGCACATTTTCCTTTCTTAAAATTTTTTGTTCATCTTCTTCACAAATGACTTATTAATTGTTTACTTCTGCAGTCGCCTTTGAACGCTCATCTTGAAGGCCTCGTAGAACTAGACAACGATGAATCTTTGACAGGACCTCATGTAGTTGATTCGACCATTGAGGGA

mRNA sequence

ATGCGTTCCTGTTATCTATTTTCTTGCTGTGGAAATACTTGGATCATAACATCATATAGTCCGTATCGATTTGGACGGCAATTTGGCTTTTTCCAAGATATCCCTAATGATATAGAGGCCATGCCACCTGCGATCACACCAGATAATATGTTACACCACTGGAGGATATGTACGAGGCATAATACTTTAACTGAGTTATACTTGCCTGCCCGTTCGTTAGAGCCTTGCAAGCATGTGACGTAGCGATTTACAGACTGGTGGTCCTTGAGGCACGGAACCTATTTTGAGGATAACATACATTATTTGGTGAGTAGTGTCATTCCTCCCCCTTCACAACCCAAACTACCCAAGAACCGAGGAACCAACCTGGGTGGTAAAGAAATTCGCCTGGTTGAGGCAATGGCTGCTACTCTCGAAGAGGAGATAAATGAGCATAAAGATGAGAGCGATAGCAGCAAAAGTGATCGTCATTGGAAGAGACCTTTGAAGAAAGCAAAGGTATCAAGTGATGATCCCGACCAAAGGGGTTCAAGTGCTTTGGGAGTCCCTAATATTCCACCACTGTCGCCTTTGAACGCTCATCTTGAAGGCCTCGTAGAACTAGACAACGATGAATCTTTGACAGGACCTCATGTAGTTGATTCGACCATTGAGGGA

Coding sequence (CDS)

ATGGCTGCTACTCTCGAAGAGGAGATAAATGAGCATAAAGATGAGAGCGATAGCAGCAAAAGTGATCGTCATTGGAAGAGACCTTTGAAGAAAGCAAAGGTATCAAGTGATGATCCCGACCAAAGGGGTTCAAGTGCTTTGGGAGTCCCTAATATTCCACCACTGTCGCCTTTGAACGCTCATCTTGAAGGCCTCGTAGAACTAGACAACGATGAATCTTTGACAGGACCTCATGTAGTTGATTCGACCATTGAGGGA

Protein sequence

MAATLEEEINEHKDESDSSKSDRHWKRPLKKAKVSSDDPDQRGSSALGVPNIPPLSPLNAHLEGLVELDNDESLTGPHVVDSTIEG

Homology

[Close]

BLAST of MELO3C028822 vs. NCBI nr
Match: KAA0054388.1 (hypothetical protein E6C27_scaffold24G001310 [Cucumis melo var. makuwa] >TYJ96814.1 hypothetical protein E5676_scaffold2750G00050 [Cucumis melo var. makuwa])

HSP 1 Score: 154.1 bits (388), Expect = 5.6e-34
Identity = 76/86 (88.37%), Postives = 81/86 (94.19%), Query Frame = 0


Query: 1   MAATLEEEINEHKDESDSSKSDRHWKRPLKKAKVSSDDPDQRGSSALGVPNIPPLSPLNA 60
           MAATL+EEI EHKDESDSSKSDRHWKRPLKKAKVS DDPD RGSSA GVPN+PPLSPLNA
Sbjct: 46  MAATLKEEIKEHKDESDSSKSDRHWKRPLKKAKVSGDDPDGRGSSAFGVPNVPPLSPLNA 105

Query: 61  HLEGLVELDNDESLTGPHVVDSTIEG 87
           HLEGLVELD+D+SLTGP+ VDSTIEG
Sbjct: 106 HLEGLVELDSDKSLTGPYAVDSTIEG 131

[Close]

BLAST of MELO3C028822 vs. NCBI nr
Match: KAA0042070.1 (hypothetical protein E6C27_scaffold67G005320 [Cucumis melo var. makuwa] >TYK18012.1 hypothetical protein E5676_scaffold306G003250 [Cucumis melo var. makuwa])

HSP 1 Score: 147.1 bits (370), Expect = 6.8e-32
Identity = 77/86 (89.53%), Postives = 79/86 (91.86%), Query Frame = 0


Query: 1   MAATLEEEINEHKDESDSSKSDRHWKRPLKKAKVSSDDPDQRGSSALGVPNIPPLSPLNA 60
           MAATLEEEINEHKDE+DSSKSDRHWKRPLKKAKVSSDDPD+RGSSALG       SPLNA
Sbjct: 551 MAATLEEEINEHKDETDSSKSDRHWKRPLKKAKVSSDDPDERGSSALG-------SPLNA 610

Query: 61  HLEGLVELDNDESLTGPHVVDSTIEG 87
           HLEGLVELDNDESLTGPHVVDSTIEG
Sbjct: 611 HLEGLVELDNDESLTGPHVVDSTIEG 629

[Close]

BLAST of MELO3C028822 vs. NCBI nr
Match: KAA0037262.1 (hypothetical protein E6C27_scaffold379G001910 [Cucumis melo var. makuwa] >TYK07521.1 hypothetical protein E5676_scaffold702G00070 [Cucumis melo var. makuwa])

HSP 1 Score: 146.4 bits (368), Expect = 1.2e-31
Identity = 73/86 (84.88%), Postives = 76/86 (88.37%), Query Frame = 0


Query: 1  MAATLEEEINEHKDESDSSKSDRHWKRPLKKAKVSSDDPDQRGSSALGVPNIPPLSPLNA 60
          M ATLEEEI +HKDESDSSKSD HWKR LKKAK+S DDPD RGSSAL VPN+PPL PLN 
Sbjct: 1  MVATLEEEIKKHKDESDSSKSDCHWKRSLKKAKISDDDPDGRGSSALRVPNVPPLLPLNT 60

Query: 61 HLEGLVELDNDESLTGPHVVDSTIEG 87
          HLEGLVELDNDESLTGPH VDSTIEG
Sbjct: 61 HLEGLVELDNDESLTGPHAVDSTIEG 86

[Close]

BLAST of MELO3C028822 vs. NCBI nr
Match: KAA0062878.1 (hypothetical protein E6C27_scaffold4427G00080 [Cucumis melo var. makuwa])

HSP 1 Score: 142.1 bits (357), Expect = 2.2e-30
Identity = 69/85 (81.18%), Postives = 76/85 (89.41%), Query Frame = 0


Query: 1   MAATLEEEINEHKDESDSSKSDRHWKRPLKKAKVSSDDPDQRGSSALGVPNIPPLSPLNA 60
           MA TLE+E+ EHKDESDSSKSDRHWKRPLKKAKVS DDPD  GSSALGVP++PPLSPLN 
Sbjct: 78  MAPTLEKEVKEHKDESDSSKSDRHWKRPLKKAKVSGDDPDGMGSSALGVPDVPPLSPLND 137

Query: 61  HLEGLVELDNDESLTGPHVVDSTIE 86
           HLEGL+ELD+DE LTGPH V+ST E
Sbjct: 138 HLEGLIELDSDECLTGPHAVNSTFE 162

[Close]

BLAST of MELO3C028822 vs. NCBI nr
Match: TYK22511.1 (hypothetical protein E5676_scaffold387G00090 [Cucumis melo var. makuwa])

HSP 1 Score: 142.1 bits (357), Expect = 2.2e-30
Identity = 69/85 (81.18%), Postives = 76/85 (89.41%), Query Frame = 0


Query: 1   MAATLEEEINEHKDESDSSKSDRHWKRPLKKAKVSSDDPDQRGSSALGVPNIPPLSPLNA 60
           MA TLE+E+ EHKDESDSSKSDRHWKRPLKKAKVS DDPD  GSSALGVP++PPLSPLN 
Sbjct: 78  MAPTLEKEVKEHKDESDSSKSDRHWKRPLKKAKVSGDDPDGMGSSALGVPDVPPLSPLND 137

Query: 61  HLEGLVELDNDESLTGPHVVDSTIE 86
           HLEGL+ELD+DE LTGPH V+ST E
Sbjct: 138 HLEGLIELDSDECLTGPHAVNSTFE 162

[Close]

BLAST of MELO3C028822 vs. ExPASy TrEMBL
Match: A0A5D3BCT1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2750G00050 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 2.7e-34
Identity = 76/86 (88.37%), Postives = 81/86 (94.19%), Query Frame = 0


Query: 1   MAATLEEEINEHKDESDSSKSDRHWKRPLKKAKVSSDDPDQRGSSALGVPNIPPLSPLNA 60
           MAATL+EEI EHKDESDSSKSDRHWKRPLKKAKVS DDPD RGSSA GVPN+PPLSPLNA
Sbjct: 46  MAATLKEEIKEHKDESDSSKSDRHWKRPLKKAKVSGDDPDGRGSSAFGVPNVPPLSPLNA 105

Query: 61  HLEGLVELDNDESLTGPHVVDSTIEG 87
           HLEGLVELD+D+SLTGP+ VDSTIEG
Sbjct: 106 HLEGLVELDSDKSLTGPYAVDSTIEG 131

[Close]

BLAST of MELO3C028822 vs. ExPASy TrEMBL
Match: A0A5D3D2A0 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G003250 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 3.3e-32
Identity = 77/86 (89.53%), Postives = 79/86 (91.86%), Query Frame = 0


Query: 1   MAATLEEEINEHKDESDSSKSDRHWKRPLKKAKVSSDDPDQRGSSALGVPNIPPLSPLNA 60
           MAATLEEEINEHKDE+DSSKSDRHWKRPLKKAKVSSDDPD+RGSSALG       SPLNA
Sbjct: 551 MAATLEEEINEHKDETDSSKSDRHWKRPLKKAKVSSDDPDERGSSALG-------SPLNA 610

Query: 61  HLEGLVELDNDESLTGPHVVDSTIEG 87
           HLEGLVELDNDESLTGPHVVDSTIEG
Sbjct: 611 HLEGLVELDNDESLTGPHVVDSTIEG 629

[Close]

BLAST of MELO3C028822 vs. ExPASy TrEMBL
Match: A0A5D3C6L1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold702G00070 PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 5.6e-32
Identity = 73/86 (84.88%), Postives = 76/86 (88.37%), Query Frame = 0


Query: 1  MAATLEEEINEHKDESDSSKSDRHWKRPLKKAKVSSDDPDQRGSSALGVPNIPPLSPLNA 60
          M ATLEEEI +HKDESDSSKSD HWKR LKKAK+S DDPD RGSSAL VPN+PPL PLN 
Sbjct: 1  MVATLEEEIKKHKDESDSSKSDCHWKRSLKKAKISDDDPDGRGSSALRVPNVPPLLPLNT 60

Query: 61 HLEGLVELDNDESLTGPHVVDSTIEG 87
          HLEGLVELDNDESLTGPH VDSTIEG
Sbjct: 61 HLEGLVELDNDESLTGPHAVDSTIEG 86

[Close]

BLAST of MELO3C028822 vs. ExPASy TrEMBL
Match: A0A5A7V5I2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold4427G00080 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 1.1e-30
Identity = 69/85 (81.18%), Postives = 76/85 (89.41%), Query Frame = 0


Query: 1   MAATLEEEINEHKDESDSSKSDRHWKRPLKKAKVSSDDPDQRGSSALGVPNIPPLSPLNA 60
           MA TLE+E+ EHKDESDSSKSDRHWKRPLKKAKVS DDPD  GSSALGVP++PPLSPLN 
Sbjct: 78  MAPTLEKEVKEHKDESDSSKSDRHWKRPLKKAKVSGDDPDGMGSSALGVPDVPPLSPLND 137

Query: 61  HLEGLVELDNDESLTGPHVVDSTIE 86
           HLEGL+ELD+DE LTGPH V+ST E
Sbjct: 138 HLEGLIELDSDECLTGPHAVNSTFE 162

[Close]

BLAST of MELO3C028822 vs. ExPASy TrEMBL
Match: A0A5D3DFN2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold387G00090 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 1.1e-30
Identity = 69/85 (81.18%), Postives = 76/85 (89.41%), Query Frame = 0


Query: 1   MAATLEEEINEHKDESDSSKSDRHWKRPLKKAKVSSDDPDQRGSSALGVPNIPPLSPLNA 60
           MA TLE+E+ EHKDESDSSKSDRHWKRPLKKAKVS DDPD  GSSALGVP++PPLSPLN 
Sbjct: 78  MAPTLEKEVKEHKDESDSSKSDRHWKRPLKKAKVSGDDPDGMGSSALGVPDVPPLSPLND 137

Query: 61  HLEGLVELDNDESLTGPHVVDSTIE 86
           HLEGL+ELD+DE LTGPH V+ST E
Sbjct: 138 HLEGLIELDSDECLTGPHAVNSTFE 162

The following BLAST results are available for this feature:

BLAST of MELO3C028822 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0054388.1	5.6e-34	88.37	hypothetical protein E6C27_scaffold24G001310 [Cucumis melo var. makuwa] >TYJ9681...	[more]
KAA0042070.1	6.8e-32	89.53	hypothetical protein E6C27_scaffold67G005320 [Cucumis melo var. makuwa] >TYK1801...	[more]
KAA0037262.1	1.2e-31	84.88	hypothetical protein E6C27_scaffold379G001910 [Cucumis melo var. makuwa] >TYK075...	[more]
KAA0062878.1	2.2e-30	81.18	hypothetical protein E6C27_scaffold4427G00080 [Cucumis melo var. makuwa]	[more]
TYK22511.1	2.2e-30	81.18	hypothetical protein E5676_scaffold387G00090 [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C028822 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C028822 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BCT1	2.7e-34	88.37	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3D2A0	3.3e-32	89.53	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A5D3C6L1	5.6e-32	84.88	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7V5I2	1.1e-30	81.18	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3DFN2	1.1e-30	81.18	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of MELO3C028822 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 2..22
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..58

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C028822.1	MELO3C028822.1	mRNA