MELO3C028810 (gene) Melon (DHL92) v4

Overview


Name	MELO3C028810
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	E3 ubiquitin-protein ligase COP1
Location	chr01: 7287917 .. 7291610 (-)
RNA-Seq Expression	MELO3C028810
Synteny	MELO3C028810

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTTGGATCCCTAACTCTACTCCAAACAACTGTCACAAGAAATTCATCAAGCCAACCCGTGCTCAGTCGTCATTGAATCCAATACCGTCATCCGTTGTGCCCAACCTTGTTGTTGTCGAACCACCACATGCCTAACCTTGTCGTCTTCTTTGTTATGAAAAAATGAATTAATTATTTGCTCGCTCTCCACTCTCTCCCATTCTCCTCCTTTTTCACACTCTCCGTTCCATATCCACAAACAATTTCTCCTCTCCGAATTTCAACTTCTATAGGTCGATACTCCTATTCAATCTTTCTTTGTGTTAAAAGTTCTTTGTTCTTTTGAAAATCGTTTATTGGTTGCTACTTCACTGGTTTCTTTCTATTTATTTTTTCATTTTTCTGCAATTTTGTAGGGTTTTCGAATTTGGTGGTGTTGGAGTTGGGTATTGGAGGTGTTGGAGTTGTGTATTGGAGGTGTTGACCCAAATTGTTCTTTTCTCTCAACCCATTTTTAAAGTGGCTCAGCCTTAGTTGAAGAGGTATGTGTATTTTGACTTTCTATCCTTTGGTAAGTTGTTTTTTCCTAATAATTTATCTTCACGATTCTGATATTGTAAGATTTTTCTTGAATCTATGTTGCATTTTCTTGTTGCATATGTGTAATTCGTAATTGAAAGATGACCTTGGATTGGGTTGTGTATTTTTATTTCTTGAGTGTTATTTCATTACTTTTGGTTTACATTGTTAACAAGCACCTTCGCCTATATGCCTTCCACTAAAATTTGGAAAACAGAGAATGGAAAAAATATTAGAAGAAAGTAATATAGAAAATTTTATACGACCATTATTGATTAAAGAAAAGAGAAAGAATAACTTCCTACATAACAACTAAGTGAGGACCATCTGAGACAACAATTTATATTTTCTTTGCCCTTTATCCTTTTCTTTTAAGTGGGATTCCGTGCTTTCGTCTTAACTCTACTGCTACGGTTGGTGTTCAGCAAAGTTGTTTCTTGTAAACTAAGTTTTCTCTGTATCCTTGCAAAAGGTTCTCAAAATTTGAAATAAAGCTAACATTTTTCTGTTTATTTGAAGTAACTATTCATATGCAAACTTAGTGCAGAAAAACGTTATTCTAAACTTAGTACAGAAAATGTTTTTCAAGAAGTAATATATATTTTCTCTTCCAATTTACTTTTCAGCTTAAGGGATTGCATAGCTCACCATCCAAAGAATTTTGCTTCATTCCTTTGTTTAGTTGCAGCTGGATAATTTTCTCATGTTTCTACATTCTAAAATGGAATCCAGATCTCTTTCAAACCTATTTTTTCATCTTTGAATCTCTAGCATTTTAGTACAATCCTTTGTTTGTTTCATTGTTGTCTCTTCCTTCATCTACATAGATTGACATTTGGGGTTTTCCAAAGCCATTCTAAAGTAAACAAGTTCATTGGATTCAAAAACATATATTCATCAATGTTTGGCGTTCAAGAAAATTGGGGACTCTGCTGTGTGTGATATTTGCTGAAATAGCATTCTGGGCAATAATAGCTGGGATTTTTTATTTGATTACGAATGAGCATAAATTGTTACAAACAATGGAGAACTGGTAAGCTTTCTTTTCATTTGTTATGTTTTGAAGATATGAATGAAGGCTACATAAAGTCTTTCCATTATTCTTTCTTGTAGTGGGTGATCCTCCAAATTATTTATAAGTTAGAAATTTTGTTTTAGTTTAAGAAAAAATTATAGAACTTATATGTTCATCTTGAATTAGGACAAAATAGTAAGTTCTTTTTGTTTAAATTTTATTTACTGTGAGGTGGTTGGTGGGTTAGACACTGCTTTTATCTTTATCATATGTCTGTTTTCTTTTTCCTTCTAATCATCGATTTAATGATTTTGAAGATGATAGATTAACATAAACTTACATGTAGGTTGTAAATATATTATTCATGATCGGGAGATGAAGGAGAGATATGTTTAATGAATGCCCCTACAAATTTTTTGTGTAACTTACTAGGACGTTGATTCAACCACCACCACTTGAAGATCAGAGCATACTTGGTTCAAGCACAATGAAACATGGACGGGTGGATTATGAATTCTTTTTTAGAATCTACAACGGTATTTAGGCCTTTCACAATTAGATTATGGATTGTTTTTTATGTAATTTTTTGGTAAGTTTATCAAGTACGTAATCTATAACTGAATTGTGTGATATTTCTTTTATTAGTTTAAGTTGTTTATAATTAGTTTTTCTTTTTTATGTTTATTAGATTGTACTTAGATGGAATAAAATGCTTGGATTCTCTTGTGATTTGTAAAGTAAAGGTTATATGTTTTGTTTTATTGAATTTGATTCTAAAATAGATTATATTTAGTGTTTCTCGTTATTCTGACCTTCTATTAGGTCTTTGTTTAATTTTTGCTACTTTAATATAACCGTCCATTCATACCTATTTGTTAAAATTTCTATTCCTCATTTTCAAATTCCTCCATATTGGTTAGCTTGTTCAATTATTTTATGCCATCCAATGATCCAACTTGGGAATTGAAGGTTTTTGCTTCTTGCGTCAAATTTCAAGTTAATCATGTTAGCTGAAATCGTAATTTGTATCTGTAATTTCTGAGCAAACTGGGAAGACAATTGTCAAGCAAAGCATTAGTTCGTACTGGAAGTTGCCAGTGGACTGAGTCTTTATCTTCTGAAACTAGTTTAGATGTATGTTTATTAACTTCTAAAACCAATAGCTGTAATCAAATTTTACAAAGTTCGTTCTTTGGTTTAATTTGCTGTCAAATGTAATAGTTTTAGAACTAATATCTAAAGGCTTGAGTTATTGATCATGAATTTTATATGGGATTCCTTCCTTTAAAAAGTTTACTTTGTCATGTTTGCAGGTGAAAATCCAGTGCTTAGCTCCAATATCAAAAGTATAAAGTTTGTATGATGGGATGATTTTGTTCTTTTTCATAAATATTTGATTATATGTTTGTTTGGCCTTTAAAATTATTGAACCATTTCAGGAGTGGAGAATTTAAACATATAGATTCTCCAAAACAACATGTTGGTGGGGATCCTCGTGTTTACAGTGCTGGCGTAAGTATCGATTCACGATTCATATGAACATGTCTTGGATTGCTTTTAAGCCATATGAGCAGAGGCTAGAATCACATCCTCTAATTATAATAAAACACCATGAGATGATAGTTACATTATACTTAACCATGAATTTGTTTTTATCTGTGTAGACTTATCTACGTATTTTTCTCCCACACTCATTTTTTCTTTTTATTATCTTTGTTGATCCCCTTAAAGATATAAAAGAAAGTATCAAGTGAACATCCATAGTTGTTGGCATCTTTTAGCTAGTTACAATACATGACTCGTACACTTCCTCTTTGAGAATGCTTTTTAATCTTGTTTTGCTGACTTCATAGTTGGTATGTAATTTGTATTGTTGTACTTTTCTTCAACCTAACATAATTTTTTGAATTATTTTTAGATTTATTGTTAAAAATAATAGATCGGGACATGATGTTGCTGGCTTGAGGTAAGGACGTATTTAATTCAATCAACGAAAGGTGCTTGTTAAGTAATTTTATAGTGTTATGGAGTACGAAGAACATGAAAAACGAGCTTGGAGTGTTGATTTTTCACGTTCTGAACCTTCCATGCTTGTATCAAGCAGTGATGACTTTAAGG

mRNA sequence

ATGCCTTGGATCCCTAACTCTACTCCAAACAACTGTCACAAGAAATTCATCAAGCCAACCCGTGCTCAGTCGTCATTGAATCCAATACCGGTTTTCGAATTTGGTGGTGTTGGAGTTGGGTATTGGAGGACGTTGATTCAACCACCACCACTTGAAGATCAGAGCATACTTGGTTCAAGCACAATGAAACATGGACGGATTGTACTTAGATGGAATAAAATGCTTGGATTCTCTTGTGATTTATTTATTGTTAAAAATAATAGATCGGGACATGATGTTGCTGGCTTGAGTGTTATGGAGTACGAAGAACATGAAAAACGAGCTTGGAGTGTTGATTTTTCACGTTCTGAACCTTCCATGCTTGTATCAAGCAGTGATGACTTTAAGG

Coding sequence (CDS)

ATGCCTTGGATCCCTAACTCTACTCCAAACAACTGTCACAAGAAATTCATCAAGCCAACCCGTGCTCAGTCGTCATTGAATCCAATACCGGTTTTCGAATTTGGTGGTGTTGGAGTTGGGTATTGGAGGACGTTGATTCAACCACCACCACTTGAAGATCAGAGCATACTTGGTTCAAGCACAATGAAACATGGACGGATTGTACTTAGATGGAATAAAATGCTTGGATTCTCTTGTGATTTATTTATTGTTAAAAATAATAGATCGGGACATGATGTTGCTGGCTTGAGTGTTATGGAGTACGAAGAACATGAAAAACGAGCTTGGAGTGTTGATTTTTCACGTTCTGAACCTTCCATGCTTGTATCAAGCAGTGATGACTTTAAG

Protein sequence

MPWIPNSTPNNCHKKFIKPTRAQSSLNPIPVFEFGGVGVGYWRTLIQPPPLEDQSILGSSTMKHGRIVLRWNKMLGFSCDLFIVKNNRSGHDVAGLSVMEYEEHEKRAWSVDFSRSEPSMLVSSSDDFK

Homology

[Close]

BLAST of MELO3C028810 vs. NCBI nr
Match: XP_019170183.1 (PREDICTED: E3 ubiquitin-protein ligase COP1-like isoform X1 [Ipomoea nil])

HSP 1 Score: 69.3 bits (168), Expect = 2.7e-08
Identity = 47/111 (42.34%), Postives = 53/111 (47.75%), Query Frame = 0


Query: 29  IPVFEFGGVGVGYWRTLIQPPPLEDQSILGSSTMKHGRIVLRWNKMLGFSCDLFIVKNNR 88
           I VFEF  V        I  P  + Q  +     +     L WNK           KN  
Sbjct: 394 IKVFEFASV--------INEPAADMQCPIAEMPTRSKLSCLSWNK---------YKKNYI 453

Query: 89  SGHDVAGL----------SVMEYEEHEKRAWSVDFSRSEPSMLVSSSDDFK 130
           +  D  G+          SVMEYEEHEKRAWSVDFSR+EPSMLVS SDD K
Sbjct: 454 ASSDYEGIVTVWDVTTRQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCK 487

[Close]

BLAST of MELO3C028810 vs. NCBI nr
Match: XP_019170184.1 (PREDICTED: E3 ubiquitin-protein ligase COP1-like isoform X2 [Ipomoea nil])

HSP 1 Score: 69.3 bits (168), Expect = 2.7e-08
Identity = 47/111 (42.34%), Postives = 53/111 (47.75%), Query Frame = 0


Query: 29  IPVFEFGGVGVGYWRTLIQPPPLEDQSILGSSTMKHGRIVLRWNKMLGFSCDLFIVKNNR 88
           I VFEF  V        I  P  + Q  +     +     L WNK           KN  
Sbjct: 342 IKVFEFASV--------INEPAADMQCPIAEMPTRSKLSCLSWNK---------YKKNYI 401

Query: 89  SGHDVAGL----------SVMEYEEHEKRAWSVDFSRSEPSMLVSSSDDFK 130
           +  D  G+          SVMEYEEHEKRAWSVDFSR+EPSMLVS SDD K
Sbjct: 402 ASSDYEGIVTVWDVTTRQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCK 435

[Close]

BLAST of MELO3C028810 vs. NCBI nr
Match: KAG8365372.1 (hypothetical protein BUALT_Bualt18G0097800 [Buddleja alternifolia])

HSP 1 Score: 68.9 bits (167), Expect = 3.6e-08
Identity = 45/111 (40.54%), Postives = 54/111 (48.65%), Query Frame = 0


Query: 29  IPVFEFGGVGVGYWRTLIQPPPLEDQSILGSSTMKHGRIVLRWNKMLGFSCDLFIVKNNR 88
           I +FEF  V            P + Q  +   + +     L WNK           KN+ 
Sbjct: 395 IKIFEFASV---------VNEPTDVQCPVAEMSTRSKLSCLSWNK---------YTKNHI 454

Query: 89  SGHDVAGL----------SVMEYEEHEKRAWSVDFSRSEPSMLVSSSDDFK 130
           +  D  G+          S+MEYEEHEKRAWSVDFSRSEPSMLVS SDD K
Sbjct: 455 ASSDYEGIVTVWDVTTRQSIMEYEEHEKRAWSVDFSRSEPSMLVSGSDDCK 487

[Close]

BLAST of MELO3C028810 vs. NCBI nr
Match: XP_031130639.1 (E3 ubiquitin-protein ligase COP1-like [Ipomoea triloba])

HSP 1 Score: 68.9 bits (167), Expect = 3.6e-08
Identity = 46/111 (41.44%), Postives = 53/111 (47.75%), Query Frame = 0


Query: 29  IPVFEFGGVGVGYWRTLIQPPPLEDQSILGSSTMKHGRIVLRWNKMLGFSCDLFIVKNNR 88
           I VFEF  V        +  P  + Q  +     +     L WNK           KN  
Sbjct: 389 IKVFEFASV--------VNEPAADMQCPIAEMPTRSKLSCLSWNK---------YKKNYI 448

Query: 89  SGHDVAGL----------SVMEYEEHEKRAWSVDFSRSEPSMLVSSSDDFK 130
           +  D  G+          SVMEYEEHEKRAWSVDFSR+EPSMLVS SDD K
Sbjct: 449 ASSDYEGIVTVWDVTTRQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCK 482

[Close]

BLAST of MELO3C028810 vs. NCBI nr
Match: GFP98960.1 (E3 ubiquitin-protein ligase cop1 [Phtheirospermum japonicum])

HSP 1 Score: 68.6 bits (166), Expect = 4.6e-08
Identity = 44/111 (39.64%), Postives = 56/111 (50.45%), Query Frame = 0


Query: 29  IPVFEFGGVGVGYWRTLIQPPPLEDQSILGSSTMKHGRIVLRWNKMLGFSCDLFIVKNNR 88
           I +FEF         T++  P  + Q  +   + +     L WNK           KN+ 
Sbjct: 362 IKIFEFS--------TVVNEP--DTQCPVAEMSTRSKLSCLSWNK---------YTKNHL 421

Query: 89  SGHDVAGL----------SVMEYEEHEKRAWSVDFSRSEPSMLVSSSDDFK 130
           +  D  G+          SVMEYEEHEKRAWSVDFSR+EPSML+S SDD K
Sbjct: 422 ASSDYEGIVTVWDVTTRQSVMEYEEHEKRAWSVDFSRTEPSMLISGSDDCK 453

[Close]

BLAST of MELO3C028810 vs. ExPASy Swiss-Prot
Match: P43254 (E3 ubiquitin-protein ligase COP1 OS=Arabidopsis thaliana OX=3702 GN=COP1 PE=1 SV=2)

HSP 1 Score: 63.2 bits (152), Expect = 2.6e-09
Identity = 37/71 (52.11%), Postives = 42/71 (59.15%), Query Frame = 0


Query: 69  LRWNKMLGFSCDLFIVKNNRSGHDVAGL----------SVMEYEEHEKRAWSVDFSRSEP 128
           L WNK           KN+ +  D  G+          S+MEYEEHEKRAWSVDFSR+EP
Sbjct: 426 LSWNKH---------EKNHIASSDYEGIVTVWDVTTRQSLMEYEEHEKRAWSVDFSRTEP 485

Query: 129 SMLVSSSDDFK 130
           SMLVS SDD K
Sbjct: 486 SMLVSGSDDCK 487

[Close]

BLAST of MELO3C028810 vs. ExPASy Swiss-Prot
Match: P93471 (E3 ubiquitin-protein ligase COP1 OS=Pisum sativum OX=3888 GN=COP1 PE=2 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.3e-09
Identity = 36/71 (50.70%), Postives = 41/71 (57.75%), Query Frame = 0


Query: 69  LRWNKMLGFSCDLFIVKNNRSGHDVAGL----------SVMEYEEHEKRAWSVDFSRSEP 128
           L WNK           KN  +  D  G+          S+MEYEEHEKRAWSVDFSR++P
Sbjct: 423 LSWNK---------YAKNQIASSDYEGIVTVWTMTTRKSLMEYEEHEKRAWSVDFSRTDP 482

Query: 129 SMLVSSSDDFK 130
           SMLVS SDD K
Sbjct: 483 SMLVSGSDDCK 484

[Close]

BLAST of MELO3C028810 vs. ExPASy Swiss-Prot
Match: Q9SYX2 (Protein SUPPRESSOR OF PHYA-105 1 OS=Arabidopsis thaliana OX=3702 GN=SPA1 PE=1 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 4.2e-04
Identity = 20/33 (60.61%), Postives = 24/33 (72.73%), Query Frame = 0


Query: 95  GLSVMEYEEHEKRAWSVDFSRSEPSMLVSSSDD 128
           G    +Y EH+KRAWSVDFS S+P+  VS SDD
Sbjct: 798 GQGFSQYTEHQKRAWSVDFSPSDPTKFVSGSDD 830

[Close]

BLAST of MELO3C028810 vs. ExPASy TrEMBL
Match: A0A2P2KYZ1 (Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.7e-08
Identity = 39/71 (54.93%), Postives = 43/71 (60.56%), Query Frame = 0


Query: 69  LRWNKMLGFSCDLFIVKNNRSGHDVAGL----------SVMEYEEHEKRAWSVDFSRSEP 128
           L WNK           KN+ +  D  G+          SVMEYEEHEKRAWSVDFSR+EP
Sbjct: 433 LSWNK---------FAKNHIASSDYEGIVTVWDVTTRQSVMEYEEHEKRAWSVDFSRTEP 492

Query: 129 SMLVSSSDDFK 130
           SMLVS SDDFK
Sbjct: 493 SMLVSGSDDFK 494

[Close]

BLAST of MELO3C028810 vs. ExPASy TrEMBL
Match: A0A2P2KZ19 (Ubiquitin ligase protein cop1 OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.7e-08
Identity = 39/71 (54.93%), Postives = 43/71 (60.56%), Query Frame = 0


Query: 69  LRWNKMLGFSCDLFIVKNNRSGHDVAGL----------SVMEYEEHEKRAWSVDFSRSEP 128
           L WNK           KN+ +  D  G+          SVMEYEEHEKRAWSVDFSR+EP
Sbjct: 282 LSWNK---------FAKNHIASSDYEGIVTVWDVTTRQSVMEYEEHEKRAWSVDFSRTEP 341

Query: 129 SMLVSSSDDFK 130
           SMLVS SDDFK
Sbjct: 342 SMLVSGSDDFK 343

[Close]

BLAST of MELO3C028810 vs. ExPASy TrEMBL
Match: A0A2P2KZ01 (Ubiquitin ligase protein cop1 OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.7e-08
Identity = 39/71 (54.93%), Postives = 43/71 (60.56%), Query Frame = 0


Query: 69  LRWNKMLGFSCDLFIVKNNRSGHDVAGL----------SVMEYEEHEKRAWSVDFSRSEP 128
           L WNK           KN+ +  D  G+          SVMEYEEHEKRAWSVDFSR+EP
Sbjct: 433 LSWNK---------FAKNHIASSDYEGIVTVWDVTTRQSVMEYEEHEKRAWSVDFSRTEP 492

Query: 129 SMLVSSSDDFK 130
           SMLVS SDDFK
Sbjct: 493 SMLVSGSDDFK 494

[Close]

BLAST of MELO3C028810 vs. ExPASy TrEMBL
Match: A0A2H5N4Z3 (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_015450 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 2.2e-08
Identity = 37/61 (60.66%), Postives = 40/61 (65.57%), Query Frame = 0


Query: 69  LRWNKMLGFSCDLFIVKNNRSGHDVAGLSVMEYEEHEKRAWSVDFSRSEPSMLVSSSDDF 128
           L WNK           KN  +  D  G+SVMEYEEHEKRAWSVDFS +EPSMLVS SDD 
Sbjct: 414 LSWNK---------YTKNLIASSDYDGISVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDC 465

Query: 129 K 130
           K
Sbjct: 474 K 465

[Close]

BLAST of MELO3C028810 vs. ExPASy TrEMBL
Match: A0A2H5N501 (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_015450 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 2.2e-08
Identity = 37/61 (60.66%), Postives = 40/61 (65.57%), Query Frame = 0


Query: 69  LRWNKMLGFSCDLFIVKNNRSGHDVAGLSVMEYEEHEKRAWSVDFSRSEPSMLVSSSDDF 128
           L WNK           KN  +  D  G+SVMEYEEHEKRAWSVDFS +EPSMLVS SDD 
Sbjct: 382 LSWNK---------YTKNLIASSDYDGISVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDC 433

Query: 129 K 130
           K
Sbjct: 442 K 433

[Close]

BLAST of MELO3C028810 vs. TAIR 10
Match: AT2G32950.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 63.2 bits (152), Expect = 1.8e-10
Identity = 37/71 (52.11%), Postives = 42/71 (59.15%), Query Frame = 0


Query: 69  LRWNKMLGFSCDLFIVKNNRSGHDVAGL----------SVMEYEEHEKRAWSVDFSRSEP 128
           L WNK           KN+ +  D  G+          S+MEYEEHEKRAWSVDFSR+EP
Sbjct: 426 LSWNKH---------EKNHIASSDYEGIVTVWDVTTRQSLMEYEEHEKRAWSVDFSRTEP 485

Query: 129 SMLVSSSDDFK 130
           SMLVS SDD K
Sbjct: 486 SMLVSGSDDCK 487

[Close]

BLAST of MELO3C028810 vs. TAIR 10
Match: AT2G46340.1 (SPA (suppressor of phyA-105) protein family )

HSP 1 Score: 45.8 bits (107), Expect = 3.0e-05
Identity = 20/33 (60.61%), Postives = 24/33 (72.73%), Query Frame = 0


Query: 95  GLSVMEYEEHEKRAWSVDFSRSEPSMLVSSSDD 128
           G    +Y EH+KRAWSVDFS S+P+  VS SDD
Sbjct: 798 GQGFSQYTEHQKRAWSVDFSPSDPTKFVSGSDD 830

[Close]

BLAST of MELO3C028810 vs. TAIR 10
Match: AT1G53090.1 (SPA1-related 4 )

HSP 1 Score: 43.1 bits (100), Expect = 1.9e-04
Identity = 17/30 (56.67%), Postives = 24/30 (80.00%), Query Frame = 0


Query: 98  VMEYEEHEKRAWSVDFSRSEPSMLVSSSDD 128
           V E +EHEKR WS+D+S ++P++L S SDD
Sbjct: 569 VTEMKEHEKRVWSIDYSSADPTLLASGSDD 598

[Close]

BLAST of MELO3C028810 vs. TAIR 10
Match: AT1G53090.2 (SPA1-related 4 )

HSP 1 Score: 43.1 bits (100), Expect = 1.9e-04
Identity = 17/30 (56.67%), Postives = 24/30 (80.00%), Query Frame = 0


Query: 98  VMEYEEHEKRAWSVDFSRSEPSMLVSSSDD 128
           V E +EHEKR WS+D+S ++P++L S SDD
Sbjct: 569 VTEMKEHEKRVWSIDYSSADPTLLASGSDD 598

[Close]

BLAST of MELO3C028810 vs. TAIR 10
Match: AT4G11110.1 (SPA1-related 2 )

HSP 1 Score: 43.1 bits (100), Expect = 1.9e-04
Identity = 19/33 (57.58%), Postives = 24/33 (72.73%), Query Frame = 0


Query: 95  GLSVMEYEEHEKRAWSVDFSRSEPSMLVSSSDD 128
           G ++  + EHEKRAWSVDFS + P+ L S SDD
Sbjct: 805 GQAISHFIEHEKRAWSVDFSEACPTKLASGSDD 837

The following BLAST results are available for this feature:

BLAST of MELO3C028810 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_019170183.1	2.7e-08	42.34	PREDICTED: E3 ubiquitin-protein ligase COP1-like isoform X1 [Ipomoea nil]	[more]
XP_019170184.1	2.7e-08	42.34	PREDICTED: E3 ubiquitin-protein ligase COP1-like isoform X2 [Ipomoea nil]	[more]
KAG8365372.1	3.6e-08	40.54	hypothetical protein BUALT_Bualt18G0097800 [Buddleja alternifolia]	[more]
XP_031130639.1	3.6e-08	41.44	E3 ubiquitin-protein ligase COP1-like [Ipomoea triloba]	[more]
GFP98960.1	4.6e-08	39.64	E3 ubiquitin-protein ligase cop1 [Phtheirospermum japonicum]	[more]

BLAST of MELO3C028810 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P43254	2.6e-09	52.11	E3 ubiquitin-protein ligase COP1 OS=Arabidopsis thaliana OX=3702 GN=COP1 PE=1 SV...	[more]
P93471	3.3e-09	50.70	E3 ubiquitin-protein ligase COP1 OS=Pisum sativum OX=3888 GN=COP1 PE=2 SV=1	[more]
Q9SYX2	4.2e-04	60.61	Protein SUPPRESSOR OF PHYA-105 1 OS=Arabidopsis thaliana OX=3702 GN=SPA1 PE=1 SV...	[more]

BLAST of MELO3C028810 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2P2KYZ1	1.7e-08	54.93	Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1	[more]
A0A2P2KZ19	1.7e-08	54.93	Ubiquitin ligase protein cop1 OS=Rhizophora mucronata OX=61149 PE=4 SV=1	[more]
A0A2P2KZ01	1.7e-08	54.93	Ubiquitin ligase protein cop1 OS=Rhizophora mucronata OX=61149 PE=4 SV=1	[more]
A0A2H5N4Z3	2.2e-08	60.66	Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_015450 PE=4 SV=1	[more]
A0A2H5N501	2.2e-08	60.66	Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_015450 PE=4 SV=1	[more]

BLAST of MELO3C028810 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G32950.1	1.8e-10	52.11	Transducin/WD40 repeat-like superfamily protein	[more]
AT2G46340.1	3.0e-05	60.61	SPA (suppressor of phyA-105) protein family	[more]
AT1G53090.1	1.9e-04	56.67	SPA1-related 4	[more]
AT1G53090.2	1.9e-04	56.67	SPA1-related 4	[more]
AT4G11110.1	1.9e-04	57.58	SPA1-related 2	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR015943	WD40/YVTN repeat-like-containing domain superfamily	GENE3D	2.130.10.10		coord: 84..129 e-value: 6.7E-8 score: 33.8

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C028810.1	MELO3C028810.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding