MELO3C028767 (gene) Melon (DHL92) v4

Overview
NameMELO3C028767
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionATP-dependent DNA helicase DDM1
Locationchr01: 17959881 .. 17962248 (+)
RNA-Seq ExpressionMELO3C028767
SyntenyMELO3C028767
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTTTATCCATTTTCTTAAAAATTAAAAGTTCTAATTTTCCTTTTTTTTCCCCAATTTAATTCATTCAAAAACCATAAGGGTGTTTCTTCCTCTTCCTTCCGTACGTTCTTCTTTTCTTTTTCCATTCTTCTTCCTGTCGTACCTCCAGCCAAGCTCGTCGACTGCAGATTTCATGTACAGACGACCTTACACACAAGCTTTGGCCGATGTTCCACCACCAGATGTTCACGCACAAACGACATTTGACCATCACAGACGACGTTCACGCACAAGCTTCGGCCGCGCCACCACAGGGATATCAATCGACTTGTCGGTGCCACCACAGACGACGTTCCCTCCCCTGACGTCCATAGCAGACTTTCGCGCAGTAGATCCCTCACGAACGGCCGCCCCAATTTCGCTCCACCACGTACGTTCTCGCACTGATTTGATCTCTTTTTGTTTGATTAATTAATAAGCTAATCTCAACTCCCATTTTATTTAGTTAGAATTTAACTCATTATTTTGGATGAGTGATAATTGCTTGTTATGGTTGAAAGCAAGGTATTGTGTTATTTTGTTTTGTTTTCTTGGTTTTTTTCCACTCCTTTATTTCTGTCAGGATTCTTTACCTGATATTTTTTATTCTAAATTGGTGGAAGCTTTTTATGGTATATGTCAAACCAGACTTTTAGCTGAAGTTTTGAAGTTGTATTCCACAATAGGTAATGAATACAGTGAAATTTTCCTACTTTGAGTTTGCAGAATAGTAATTGAGAATGCGGATGTATGAAAAGGCCTAATGGAATTCTCTATATCATTATGAATTCTCTATGGATGGTAATTGAGTGGAATATAGCATTATGAGTTCTCTCTATCTCTTTATAATATACTAGTGATTTTGCTATGACTTAAACTGAAAGCTTAGCTATGATATAAATTGATAACCTAATTTATTTGCTGTACAACATACAGCTTCTAATTGCAGTGCTATTGACAAATCTTTTTCTAATACTGCCTCTTATCAACTTAGATTGTAGACCATTTTTTTGATTTCTTAGACTTAGGGGTTTGCTCTTTCCGAAGGTCTTTATGCAGTTTGGGGCTTGTTTGTTTGGATACACATCTCTGTTTATTTTTCATAAGATGCATAAACTTTTTAATGATATTTAGTAAGTTAATTTTCATTTATTTAAGTTTAATTCCAAGAAAAACTTGTTGATCATACATCCTTTTGTTTCTGTCATACCATTCACTCAAAGGCTTGAATAGTAGACTGAATATTGTTGATCCAAGTAATTCTTGGTGTTACTCTAAAGCCATAGTTGCTATAAAGGCAAAAGACATTACTTTTAGGCTTGAAATTATAAAGCTCATAAGTTTTTGTGTAGCTTAATGGAAGTTCATAAGCACTAGCTATACAAACAAGGGAAAAATGATAAATGTGGGTATCTTTTAAATTAGTTCCTTAGCCCCCTACCCGCTGTTGGTTCTTGCCTTTTTGTGGCTTATATACTTATTGTTGTTTCTCATATAAAAAAACATAAAAATATATAATAGAGGGAATTTGTTCCAACAAGGAAGTTGGAACTTTAGGAAGTTTGTAGATTTTTTTTATAGATGAAATTAGGAAGTTTGAAGATGGTAGGAATAGTACCAAGATGTTTATGTTTATGTTTATGGTATAGATGCTCTGTTTGTATATAAATGCAATGTGCTTGTTGTAACTGCTAATTATGTTGTGGTATATTTTCTTCTTTATCATATTTTATCAGTTATCATATGGTACATAACTGGCAAGATGATATTTTCTCTTGGTTGTTAGTTAGCTTTGAAGTTGCTAAATAGCTAGAGGGTTCAGGGATAAGTTTCTAACTCTTTTTAACTATCTTGCTCTAATATATTATCAACGTTCAAGATGAGGTAATGGAATTTTAAGATTATACTAGTGTTGATGGCTTTTTCCCCAGCACATATAATGGGTCGAAGTTGGTGGGTTACTTTTTGCTTTTCTTTGGTTTCGTTGAATTTTTTAGAACCAGATGGTTTTGTTATTTTTGAAAAATAAGAGTCGAACCATCTGGTATGTAATAATTAATTGGTTTGGTTTAACTTGCATGCTACAAAATGTGTTATATTCATTTTTATGTAATAATTAATTGGATTTTCCTTTACATACGGCAGGTAGACTAGAAATTTTGCAAATATTTCCATCATGATAGTGTTGGTGATCTGATGGTGCATTAAGGATTATGTAATTAATCAATTTAAGTTTTCTACATATAGATCCAGAAGTTCAATGATGTTAACAACAACTACAAAATATTTATTCTAAGTGCACAGGCTGGTGGTCTGGGTATCAACCTTACTACAACAGATACTTATTAA

mRNA sequence

TTTTTATCCATTTTCTTAAAAATTAAAAGTTCTAATTTTCCTTTTTTTTCCCCAATTTAATTCATTCAAAAACCATAAGGGTGTTTCTTCCTCTTCCTTCCGTACGTTCTTCTTTTCTTTTTCCATTCTTCTTCCTGTCGTACCTCCAGCCAAGCTCGTCGACTGCAGATTTCATGTACAGACGACCTTACACACAAGCTTTGGCCGATGTTCCACCACCAGATGTTCACGCACAAACGACATTTGACCATCACAGACGACGTTCACGCACAAGCTTCGGCCGCGCCACCACAGGGATATCAATCGACTTGTCGGTGCCACCACAGACGACGTTCCCTCCCCTGACGTCCATAGCAGACTTTCGCGCAGTAGATCCCTCACGAACGGCCGCCCCAATTTCGCTCCACCACATCCAGAAGTTCAATGATGTTAACAACAACTACAAAATATTTATTCTAAGTGCACAGGCTGGTGGTCTGGGTATCAACCTTACTACAACAGATACTTATTAA

Coding sequence (CDS)

ATGTACAGACGACCTTACACACAAGCTTTGGCCGATGTTCCACCACCAGATGTTCACGCACAAACGACATTTGACCATCACAGACGACGTTCACGCACAAGCTTCGGCCGCGCCACCACAGGGATATCAATCGACTTGTCGGTGCCACCACAGACGACGTTCCCTCCCCTGACGTCCATAGCAGACTTTCGCGCAGTAGATCCCTCACGAACGGCCGCCCCAATTTCGCTCCACCACATCCAGAAGTTCAATGATGTTAACAACAACTACAAAATATTTATTCTAAGTGCACAGGCTGGTGGTCTGGGTATCAACCTTACTACAACAGATACTTATTAA

Protein sequence

MYRRPYTQALADVPPPDVHAQTTFDHHRRRSRTSFGRATTGISIDLSVPPQTTFPPLTSIADFRAVDPSRTAAPISLHHIQKFNDVNNNYKIFILSAQAGGLGINLTTTDTY
Homology
[Close]
BLAST of MELO3C028767 vs. NCBI nr
Match: KAA8544841.1 (hypothetical protein F0562_019625 [Nyssa sinensis])

HSP 1 Score: 57.0 bits (136), Expect = 1.2e-04
Identity = 25/32 (78.12%), Postives = 30/32 (93.75%), Query Frame = 0 

Query: 80  IQKFNDVNNNYKIFILSAQAGGLGINLTTTDT 112
           IQ+FNDVN+NY+IF+LS +AGGLGINLTT DT
Sbjct: 409 IQEFNDVNSNYRIFLLSTRAGGLGINLTTADT 440

[Close]
BLAST of MELO3C028767 vs. NCBI nr
Match: TYK16711.1 (ATP-dependent DNA helicase DDM1 [Cucumis melo var. makuwa])

HSP 1 Score: 55.8 bits (133), Expect = 2.7e-04
Identity = 25/32 (78.12%), Postives = 29/32 (90.62%), Query Frame = 0 

Query: 80  IQKFNDVNNNYKIFILSAQAGGLGINLTTTDT 112
           IQ+FNDVN+NY+IFILS +AGGLGINLT  DT
Sbjct: 596 IQEFNDVNSNYRIFILSTRAGGLGINLTAADT 627

[Close]
BLAST of MELO3C028767 vs. NCBI nr
Match: XP_008453736.1 (PREDICTED: ATP-dependent DNA helicase DDM1 [Cucumis melo])

HSP 1 Score: 55.8 bits (133), Expect = 2.7e-04
Identity = 25/32 (78.12%), Postives = 29/32 (90.62%), Query Frame = 0 

Query: 80  IQKFNDVNNNYKIFILSAQAGGLGINLTTTDT 112
           IQ+FNDVN+NY+IFILS +AGGLGINLT  DT
Sbjct: 569 IQEFNDVNSNYRIFILSTRAGGLGINLTAADT 600

[Close]
BLAST of MELO3C028767 vs. NCBI nr
Match: KAG7015341.1 (ATP-dependent DNA helicase DDM1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 55.8 bits (133), Expect = 2.7e-04
Identity = 25/32 (78.12%), Postives = 29/32 (90.62%), Query Frame = 0 

Query: 80  IQKFNDVNNNYKIFILSAQAGGLGINLTTTDT 112
           IQ+FNDVN+NY+IFILS +AGGLGINLT  DT
Sbjct: 569 IQEFNDVNSNYRIFILSTRAGGLGINLTAADT 600

[Close]
BLAST of MELO3C028767 vs. NCBI nr
Match: XP_022929281.1 (ATP-dependent DNA helicase DDM1 [Cucurbita moschata] >XP_022929282.1 ATP-dependent DNA helicase DDM1 [Cucurbita moschata])

HSP 1 Score: 55.8 bits (133), Expect = 2.7e-04
Identity = 25/32 (78.12%), Postives = 29/32 (90.62%), Query Frame = 0 

Query: 80  IQKFNDVNNNYKIFILSAQAGGLGINLTTTDT 112
           IQ+FNDVN+NY+IFILS +AGGLGINLT  DT
Sbjct: 569 IQEFNDVNSNYRIFILSTRAGGLGINLTAADT 600

[Close]
BLAST of MELO3C028767 vs. ExPASy TrEMBL
Match: A0A5J5BU89 (Beta-amylase OS=Nyssa sinensis OX=561372 GN=F0562_019625 PE=3 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 5.9e-05
Identity = 25/32 (78.12%), Postives = 30/32 (93.75%), Query Frame = 0 

Query: 80  IQKFNDVNNNYKIFILSAQAGGLGINLTTTDT 112
           IQ+FNDVN+NY+IF+LS +AGGLGINLTT DT
Sbjct: 409 IQEFNDVNSNYRIFLLSTRAGGLGINLTTADT 440

[Close]
BLAST of MELO3C028767 vs. ExPASy TrEMBL
Match: A0A5B6Z435 (Putative ATP-dependent DNA helicase DDM1 OS=Davidia involucrata OX=16924 GN=Din_008240 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 1.0e-04
Identity = 26/38 (68.42%), Postives = 30/38 (78.95%), Query Frame = 0 

Query: 74  PISLHHIQKFNDVNNNYKIFILSAQAGGLGINLTTTDT 112
           P     IQ+FNDVN+NY+IFILS +AGGLGINLT  DT
Sbjct: 590 PERKRQIQEFNDVNSNYRIFILSTRAGGLGINLTAADT 627

[Close]
BLAST of MELO3C028767 vs. ExPASy TrEMBL
Match: A0A6J1JAC1 (ATP-dependent DNA helicase DDM1 OS=Cucurbita maxima OX=3661 GN=LOC111483152 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.3e-04
Identity = 25/32 (78.12%), Postives = 29/32 (90.62%), Query Frame = 0 

Query: 80  IQKFNDVNNNYKIFILSAQAGGLGINLTTTDT 112
           IQ+FNDVN+NY+IFILS +AGGLGINLT  DT
Sbjct: 569 IQEFNDVNSNYRIFILSTRAGGLGINLTAADT 600

[Close]
BLAST of MELO3C028767 vs. ExPASy TrEMBL
Match: A0A6J1EMP5 (ATP-dependent DNA helicase DDM1 OS=Cucurbita moschata OX=3662 GN=LOC111435913 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.3e-04
Identity = 25/32 (78.12%), Postives = 29/32 (90.62%), Query Frame = 0 

Query: 80  IQKFNDVNNNYKIFILSAQAGGLGINLTTTDT 112
           IQ+FNDVN+NY+IFILS +AGGLGINLT  DT
Sbjct: 569 IQEFNDVNSNYRIFILSTRAGGLGINLTAADT 600

[Close]
BLAST of MELO3C028767 vs. ExPASy TrEMBL
Match: A0A6A2Z1S8 (ATP-dependent DNA helicase DDM1 OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00111098pilonHSYRG00031 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.3e-04
Identity = 25/32 (78.12%), Postives = 29/32 (90.62%), Query Frame = 0 

Query: 80  IQKFNDVNNNYKIFILSAQAGGLGINLTTTDT 112
           IQ+FNDVN+NY+IFILS +AGGLGINLT  DT
Sbjct: 612 IQEFNDVNSNYRIFILSTRAGGLGINLTAADT 643

[Close]
BLAST of MELO3C028767 vs. TAIR 10
Match: AT2G25170.1 (chromatin remodeling factor CHD3 (PICKLE) )

HSP 1 Score: 40.8 bits (94), Expect = 8.4e-04
Identity = 19/32 (59.38%), Postives = 23/32 (71.88%), Query Frame = 0 

Query: 80  IQKFNDVNNNYKIFILSAQAGGLGINLTTTDT 112
           I +FN  N+N   F+LS +AGGLGINL T DT
Sbjct: 654 IDRFNAKNSNKFCFLLSTRAGGLGINLATADT 685

The following BLAST results are available for this feature:
BLAST of MELO3C028767 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA8544841.11.2e-0478.13hypothetical protein F0562_019625 [Nyssa sinensis][more]
TYK16711.12.7e-0478.13ATP-dependent DNA helicase DDM1 [Cucumis melo var. makuwa][more]
XP_008453736.12.7e-0478.13PREDICTED: ATP-dependent DNA helicase DDM1 [Cucumis melo][more]
KAG7015341.12.7e-0478.13ATP-dependent DNA helicase DDM1 [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_022929281.12.7e-0478.13ATP-dependent DNA helicase DDM1 [Cucurbita moschata] >XP_022929282.1 ATP-depende... [more]
BLAST of MELO3C028767 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C028767 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5J5BU895.9e-0578.13Beta-amylase OS=Nyssa sinensis OX=561372 GN=F0562_019625 PE=3 SV=1[more]
A0A5B6Z4351.0e-0468.42Putative ATP-dependent DNA helicase DDM1 OS=Davidia involucrata OX=16924 GN=Din_... [more]
A0A6J1JAC11.3e-0478.13ATP-dependent DNA helicase DDM1 OS=Cucurbita maxima OX=3661 GN=LOC111483152 PE=4... [more]
A0A6J1EMP51.3e-0478.13ATP-dependent DNA helicase DDM1 OS=Cucurbita moschata OX=3662 GN=LOC111435913 PE... [more]
A0A6A2Z1S81.3e-0478.13ATP-dependent DNA helicase DDM1 OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00111... [more]
BLAST of MELO3C028767 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G25170.18.4e-0459.38chromatin remodeling factor CHD3 (PICKLE) [more]
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR027417P-loop containing nucleoside triphosphate hydrolaseGENE3D3.40.50.300coord: 69..112
e-value: 2.6E-7
score: 32.0

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C028767.1MELO3C028767.1mRNA