MELO3C028745.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C028745.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionGlial fibrillary acidic protein-like
Locationchr01: 17082743 .. 17083722 (+)
RNA-Seq ExpressionMELO3C028745.jh1
SyntenyMELO3C028745.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTAAATACTTACGCATTTGAGGTCGTTGCCCAATTGATTCCTAATGAAGACTCGTGAGAGAATGTATCTCAGTGGTGGGAACATTTTCAACTAGAGTCAGGGGTGAGTTGGCCAAAGAAATTAGAAGTTCCACTTCCAAAGACTTGTCAGTTGGGATTCATCAACAATAACCTGGAAGAATTAAAAAGCTTATGGGAGAGCTTAATGCCAGAGCATAGAGTAGAGTTTACAAAAGCATATGGAAGCATAGGTGACCTTTTATACACTACCATTAATACATCAACATTGCAAGCTTTGTCAAATTTCTGGGACCCTATGTTGAAGTGTTTCACGTTCAACACGGTCAACTTAACTCCTACTATAGAAGAATATCAAGCACTTATTAGCCTACCAGTTGACAGAGGGAATAAGCCTTATATCAATGATTGAAAGTTGACTTTACAAGGGTCACTATCAAAGTTTATGGGTGACATTCATGCATTTGAGATAAAGAAATAGATGAAGACAAAAGAAGGTAGGAATTGTATTCCCATCAATTATCTCATCAATCTTGCGCATGGTTGTTTATCAGGGAAGAAGGGTTTGTCTCTCATCGCATTATGTATCTATGGAACAATTATTTTCCTAGAATTAAAGGATATGTTGAAGAAGAGGTTGTTAAGATTTTTCTTGGGATAGAACGAGGGGTAAACCCTGTTATCCCAATCATGGCAGGGACTTTCAAATCACTAAATCATTGTCGAATCCAAGATAAAGGAAAATTCTTCAACTGTGCTCCTATGCTCTTCATTTGGATTTCCAGTCAACTAAGGTATCCTAATAATTTTGGATATCCTCAAATAGAATTCAGCAGTCCGTGGAATAATACAAGAAACACTATTAGAGAATTCAATAGTGCACACTAGGATCCAAAGGATCCATAATTTGCGGTTTGGATACAGTTTTTCAGTCATTTAACGACAGTAGAAGCAATTTGG

mRNA sequence

ATGGTAAATACTTACGCATTTGAGGTCGTTGCCCAATTGATTCCTAATGAAGACTCGTGAGAGAATGTATCTCAGTGGTGGGAACATTTTCAACTAGAGTCAGGGGTGAGTTGGCCAAAGAAATTAGAAGTTCCACTTCCAAAGACTTGTCAGTTGGGATTCATCAACAATAACCTGGAAGAATTAAAAAGCTTATGGGAGAGCTTAATGCCAGAGCATAGAGTAGAGTTTACAAAAGCATATGGAAGCATAGGTGACCTTTTATACACTACCATTAATACATCAACATTGCAAGCTTTGTCAAATTTCTGGGACCCTATGTTGAAGTGTTTCACGTTCAACACGGTCAACTTAACTCCTACTATAGAAGAATATCAAGCACTTATTAGCCTACCAGTTGACAGAGGGAATAAGCCTTATATCAATGATTGAAAGTTGACTTTACAAGGGTCACTATCAAAGTTTATGGGTGACATTCATGCATTTGAGATAAAGAAATAGATGAAGACAAAAGAAGGTAGGAATTGTATTCCCATCAATTATCTCATCAATCTTGCGCATGGTTGTTTATCAGGGAAGAAGGGTTTGTCTCTCATCGCATTATGTATCTATGGAACAATTATTTTCCTAGAATTAAAGGATATGTTGAAGAAGAGGTTGTTAAGATTTTTCTTGGGATAGAACGAGGGGTAAACCCTGTTATCCCAATCATGGCAGGGACTTTCAAATCACTAAATCATTGTCGAATCCAAGATAAAGGAAAATTCTTCAACTGTGCTCCTATGCTCTTCATTTGGATTTCCAGTCAACTAAGGTATCCTAATAATTTTGGATATCCTCAAATAGAATTCAGCAGTCCGTGGAATAATACAAGAAACACTATTAGAGAATTCAATAGTGCACACTAGGATCCAAAGGATCCATAATTTGCGGTTTGGATACAGTTTTTCAGTCATTTAACGACAGTAGAAGCAATTTGG

Coding sequence (CDS)

ATGTATCTATGGAACAATTATTTTCCTAGAATTAAAGGATATGTTGAAGAAGAGGTTGTTAAGATTTTTCTTGGGATAGAACGAGGGGTAAACCCTGTTATCCCAATCATGGCAGGGACTTTCAAATCACTAAATCATTGTCGAATCCAAGATAAAGGAAAATTCTTCAACTGTGCTCCTATGCTCTTCATTTGGATTTCCAGTCAACTAAGGTATCCTAATAATTTTGGATATCCTCAAATAGAATTCAGCAGTCCGTGGAATAATACAAGAAACACTATTAGAGAATTCAATAGTGCACACTAG

Protein sequence

MYLWNNYFPRIKGYVEEEVVKIFLGIERGVNPVIPIMAGTFKSLNHCRIQDKGKFFNCAPMLFIWISSQLRYPNNFGYPQIEFSSPWNNTRNTIREFNSAH
Homology
[Close]
BLAST of MELO3C028745.jh1 vs. NCBI nr
Match: KAA0065295.1 (uncharacterized protein E6C27_scaffold1023G00080 [Cucumis melo var. makuwa])

HSP 1 Score: 185 bits (470), Expect = 4.24e-55
Identity = 85/94 (90.43%), Postives = 90/94 (95.74%), Query Frame = 0 

Query: 8   FPRIKGYVEEEVVKIFLGIERGVNPVIPIMAGTFKSLNHCRIQDKGKFFNCAPMLFIWIS 67
           FPRIKGYVEEEVVKIF+GIERGVNPVIPIMA TF+SLNHC+IQ KGKFF+CAPMLFIWIS
Sbjct: 209 FPRIKGYVEEEVVKIFVGIERGVNPVIPIMAETFRSLNHCQIQGKGKFFSCAPMLFIWIS 268

Query: 68  SQLRYPNNFGYPQIEFSSPWNNTRNTIREFNSAH 101
           S LRYPNNFGYPQI+FSSPWN TRNTIREFNSAH
Sbjct: 269 SHLRYPNNFGYPQIKFSSPWNKTRNTIREFNSAH 302

[Close]
BLAST of MELO3C028745.jh1 vs. NCBI nr
Match: TYK16834.1 (glial fibrillary acidic protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 184 bits (466), Expect = 2.36e-52
Identity = 85/94 (90.43%), Postives = 89/94 (94.68%), Query Frame = 0 

Query: 8   FPRIKGYVEEEVVKIFLGIERGVNPVIPIMAGTFKSLNHCRIQDKGKFFNCAPMLFIWIS 67
           FPRIKGYVEEEVVKIF+GIERGVNPVIPIM  TF+SLNHCRIQ KGKFF+CAPMLFIWIS
Sbjct: 95  FPRIKGYVEEEVVKIFVGIERGVNPVIPIMTETFRSLNHCRIQGKGKFFSCAPMLFIWIS 154

Query: 68  SQLRYPNNFGYPQIEFSSPWNNTRNTIREFNSAH 101
           S LRYPNNFGY QI+FSSPWNNTRNTIREFNSAH
Sbjct: 155 SHLRYPNNFGYLQIKFSSPWNNTRNTIREFNSAH 188

[Close]
BLAST of MELO3C028745.jh1 vs. NCBI nr
Match: KAA0033221.1 (uncharacterized protein E6C27_scaffold845G00100 [Cucumis melo var. makuwa])

HSP 1 Score: 186 bits (471), Expect = 5.32e-52
Identity = 85/94 (90.43%), Postives = 90/94 (95.74%), Query Frame = 0 

Query: 8   FPRIKGYVEEEVVKIFLGIERGVNPVIPIMAGTFKSLNHCRIQDKGKFFNCAPMLFIWIS 67
           FPRIKGYVEEEVVKIF+GIERGVNPVIPIMA TF+SLNHCRIQ KGKFF+CAPMLFIWIS
Sbjct: 209 FPRIKGYVEEEVVKIFVGIERGVNPVIPIMAETFRSLNHCRIQGKGKFFSCAPMLFIWIS 268

Query: 68  SQLRYPNNFGYPQIEFSSPWNNTRNTIREFNSAH 101
           S LRYPNNFGYPQI+F+SPWN TRNTIREFNSAH
Sbjct: 269 SHLRYPNNFGYPQIKFNSPWNKTRNTIREFNSAH 302

[Close]
BLAST of MELO3C028745.jh1 vs. NCBI nr
Match: KAA0037618.1 (uncharacterized protein E6C27_scaffold277G002790 [Cucumis melo var. makuwa])

HSP 1 Score: 120 bits (302), Expect = 1.05e-31
Identity = 51/93 (54.84%), Postives = 72/93 (77.42%), Query Frame = 0 

Query: 8   FPRIKGYVEEEVVKIFLGIERGVNPVIPIMAGTFKSLNHCRIQDKGKFFNCAPMLFIWIS 67
           FP+ +GYV+E+V+K+F  +ERGVNP+IPI+A TF+SLN+CR + +GK   C P+L+IWI 
Sbjct: 25  FPKAEGYVDEKVIKLFFEMERGVNPIIPILAETFRSLNYCRNKGEGKLNCCVPLLYIWIH 84

Query: 68  SQLRYPNNFGYPQIEFSSPWNNTRNTIREFNSA 100
           S +++P  F  P+++FSSPWN  RNTI EF  A
Sbjct: 85  SHIKFPAEFRCPRLDFSSPWNLMRNTISEFGMA 117

[Close]
BLAST of MELO3C028745.jh1 vs. NCBI nr
Match: KAA0046606.1 (glial fibrillary acidic protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 125 bits (313), Expect = 2.45e-31
Identity = 58/64 (90.62%), Postives = 61/64 (95.31%), Query Frame = 0 

Query: 8   FPRIKGYVEEEVVKIFLGIERGVNPVIPIMAGTFKSLNHCRIQDKGKFFNCAPMLFIWIS 67
           FPRIKGYVEEEVVKIF+GIERGVNPVIPIMA TF+SLNHCRIQ KGKFF+CAPMLFIWIS
Sbjct: 209 FPRIKGYVEEEVVKIFVGIERGVNPVIPIMAETFRSLNHCRIQGKGKFFSCAPMLFIWIS 268

Query: 68  SQLR 71
           S LR
Sbjct: 269 SHLR 272

[Close]
BLAST of MELO3C028745.jh1 vs. ExPASy TrEMBL
Match: A0A5A7VHI3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1023G00080 PE=4 SV=1)

HSP 1 Score: 185 bits (470), Expect = 2.05e-55
Identity = 85/94 (90.43%), Postives = 90/94 (95.74%), Query Frame = 0 

Query: 8   FPRIKGYVEEEVVKIFLGIERGVNPVIPIMAGTFKSLNHCRIQDKGKFFNCAPMLFIWIS 67
           FPRIKGYVEEEVVKIF+GIERGVNPVIPIMA TF+SLNHC+IQ KGKFF+CAPMLFIWIS
Sbjct: 209 FPRIKGYVEEEVVKIFVGIERGVNPVIPIMAETFRSLNHCQIQGKGKFFSCAPMLFIWIS 268

Query: 68  SQLRYPNNFGYPQIEFSSPWNNTRNTIREFNSAH 101
           S LRYPNNFGYPQI+FSSPWN TRNTIREFNSAH
Sbjct: 269 SHLRYPNNFGYPQIKFSSPWNKTRNTIREFNSAH 302

[Close]
BLAST of MELO3C028745.jh1 vs. ExPASy TrEMBL
Match: A0A5D3D0S2 (Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold96G001090 PE=4 SV=1)

HSP 1 Score: 184 bits (466), Expect = 1.14e-52
Identity = 85/94 (90.43%), Postives = 89/94 (94.68%), Query Frame = 0 

Query: 8   FPRIKGYVEEEVVKIFLGIERGVNPVIPIMAGTFKSLNHCRIQDKGKFFNCAPMLFIWIS 67
           FPRIKGYVEEEVVKIF+GIERGVNPVIPIM  TF+SLNHCRIQ KGKFF+CAPMLFIWIS
Sbjct: 95  FPRIKGYVEEEVVKIFVGIERGVNPVIPIMTETFRSLNHCRIQGKGKFFSCAPMLFIWIS 154

Query: 68  SQLRYPNNFGYPQIEFSSPWNNTRNTIREFNSAH 101
           S LRYPNNFGY QI+FSSPWNNTRNTIREFNSAH
Sbjct: 155 SHLRYPNNFGYLQIKFSSPWNNTRNTIREFNSAH 188

[Close]
BLAST of MELO3C028745.jh1 vs. ExPASy TrEMBL
Match: A0A5A7SUT0 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold845G00100 PE=4 SV=1)

HSP 1 Score: 186 bits (471), Expect = 2.58e-52
Identity = 85/94 (90.43%), Postives = 90/94 (95.74%), Query Frame = 0 

Query: 8   FPRIKGYVEEEVVKIFLGIERGVNPVIPIMAGTFKSLNHCRIQDKGKFFNCAPMLFIWIS 67
           FPRIKGYVEEEVVKIF+GIERGVNPVIPIMA TF+SLNHCRIQ KGKFF+CAPMLFIWIS
Sbjct: 209 FPRIKGYVEEEVVKIFVGIERGVNPVIPIMAETFRSLNHCRIQGKGKFFSCAPMLFIWIS 268

Query: 68  SQLRYPNNFGYPQIEFSSPWNNTRNTIREFNSAH 101
           S LRYPNNFGYPQI+F+SPWN TRNTIREFNSAH
Sbjct: 269 SHLRYPNNFGYPQIKFNSPWNKTRNTIREFNSAH 302

[Close]
BLAST of MELO3C028745.jh1 vs. ExPASy TrEMBL
Match: A0A5A7T494 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold277G002790 PE=4 SV=1)

HSP 1 Score: 120 bits (302), Expect = 5.06e-32
Identity = 51/93 (54.84%), Postives = 72/93 (77.42%), Query Frame = 0 

Query: 8   FPRIKGYVEEEVVKIFLGIERGVNPVIPIMAGTFKSLNHCRIQDKGKFFNCAPMLFIWIS 67
           FP+ +GYV+E+V+K+F  +ERGVNP+IPI+A TF+SLN+CR + +GK   C P+L+IWI 
Sbjct: 25  FPKAEGYVDEKVIKLFFEMERGVNPIIPILAETFRSLNYCRNKGEGKLNCCVPLLYIWIH 84

Query: 68  SQLRYPNNFGYPQIEFSSPWNNTRNTIREFNSA 100
           S +++P  F  P+++FSSPWN  RNTI EF  A
Sbjct: 85  SHIKFPAEFRCPRLDFSSPWNLMRNTISEFGMA 117

[Close]
BLAST of MELO3C028745.jh1 vs. ExPASy TrEMBL
Match: A0A5A7TXA1 (Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold114G001520 PE=4 SV=1)

HSP 1 Score: 125 bits (313), Expect = 1.19e-31
Identity = 58/64 (90.62%), Postives = 61/64 (95.31%), Query Frame = 0 

Query: 8   FPRIKGYVEEEVVKIFLGIERGVNPVIPIMAGTFKSLNHCRIQDKGKFFNCAPMLFIWIS 67
           FPRIKGYVEEEVVKIF+GIERGVNPVIPIMA TF+SLNHCRIQ KGKFF+CAPMLFIWIS
Sbjct: 209 FPRIKGYVEEEVVKIFVGIERGVNPVIPIMAETFRSLNHCRIQGKGKFFSCAPMLFIWIS 268

Query: 68  SQLR 71
           S LR
Sbjct: 269 SHLR 272

The following BLAST results are available for this feature:
BLAST of MELO3C028745.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0065295.14.24e-5590.43uncharacterized protein E6C27_scaffold1023G00080 [Cucumis melo var. makuwa][more]
TYK16834.12.36e-5290.43glial fibrillary acidic protein-like [Cucumis melo var. makuwa][more]
KAA0033221.15.32e-5290.43uncharacterized protein E6C27_scaffold845G00100 [Cucumis melo var. makuwa][more]
KAA0037618.11.05e-3154.84uncharacterized protein E6C27_scaffold277G002790 [Cucumis melo var. makuwa][more]
KAA0046606.12.45e-3190.63glial fibrillary acidic protein-like [Cucumis melo var. makuwa][more]
BLAST of MELO3C028745.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C028745.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7VHI32.05e-5590.43Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3D0S21.14e-5290.43Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A5A7SUT02.58e-5290.43Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold84... [more]
A0A5A7T4945.06e-3254.84Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7TXA11.19e-3190.63Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
BLAST of MELO3C028745.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C028745.jh1.t1MELO3C028745.jh1.t1mRNA