MELO3C028745 (gene) Melon (DHL92) v4

Overview


Name	MELO3C028745
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Glial fibrillary acidic protein-like
Location	chr01: 16633313 .. 16634292 (+)
RNA-Seq Expression	MELO3C028745
Synteny	MELO3C028745

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAAATACTTACGCATTTGAGGTCGTTGCCCAATTGATTCCTAATGAAGACTCGTGAGAGAATGTATCTCAGTGGTGGGAACATTTTCAACTAGAGTCAGGGGTGAGTTGGCTAAAGAAATTAGAAGTTCCACTTCCAAAGACTTGTCAGTTGGGATTCATCAACAATAACCTGGAAGAATTAAAAAGCTTATGGGAGAGCTTAATGCCAGAGCATAGAGTAGAGTTTACAAAAGCATATGGAAGCATAGGTGACCTTTTATACACTACCATTAATACATCAACATTGCAAGCTTTGTCAAATTTCTGGGACCCTATGTTGAAGTGTTTCACGTTCAACACGGTCAACTTAACTCCTACTATAGAAGAATATCAAGCACTTATTAGCCTACCAGTTGACAGAGGGAATAAGCCTTATATCAATGATCGAAAGTTGACTTTACAAGGGTCACTATCAAAGTTTATGGGTGACATTCATGCATCTGAGATAAAGAAACAGATGAAGACAAAAGAAGGTAGGAATTGTATTCCCATCAATTATCTCATCAATCTTGCGCATGGTTGTTTATCAGGGAAGAAGGGTTTGTCTCTCATCGCATTATGTATCTATGGAACAATTATTTTCCTAGAATTAAAGGATATGTTGAAGAAGAGGTTGTTAAGATTTTTCTTGGGATAGAACGAGGGGTAAACCCTGTTATCCCAATCATGGCAGGGACTTTCAAATCACTAAATCATTGTCGAATCCAAGATAAAGGAAAATTCTTCAACTGTGCTCCTATGCTCTTCATTTGGATTTCCAGTCAACTAAGGTATCCTAATAATTTTGGATATCCTCAAATAGAATTCAGCAGTCCGTGGAATAATACAAGAAACACTATTAGAGAATTCAATAGTGCACACTAGGATCCAAAGGATCCATAATTTGCGGTTTGGATACAGTTTTTCAGTCATTTAACGACAGTAGAAGCAATTTGG

mRNA sequence

ATGGTAAATACTTACGCATTTGAGGTCGTTGCCCAATTGATTCCTAATGAAGACTCGTGAGAGAATGTATCTCAGTGGTGGGAACATTTTCAACTAGAGTCAGGGGTGAGTTGGCTAAAGAAATTAGAAGTTCCACTTCCAAAGACTTGTCAGTTGGGATTCATCAACAATAACCTGGAAGAATTAAAAAGCTTATGGGAGAGCTTAATGCCAGAGCATAGAGTAGAGTTTACAAAAGCATATGGAAGCATAGGTGACCTTTTATACACTACCATTAATACATCAACATTGCAAGCTTTGTCAAATTTCTGGGACCCTATGTTGAAGTGTTTCACGTTCAACACGGTCAACTTAACTCCTACTATAGAAGAATATCAAGCACTTATTAGCCTACCAGTTGACAGAGGGAATAAGCCTTATATCAATGATCGAAAGTTGACTTTACAAGGGTCACTATCAAAGTTTATGGGTGACATTCATGCATCTGAGATAAAGAAACAGATGAAGACAAAAGAAGGTAGGAATTGTATTCCCATCAATTATCTCATCAATCTTGCGCATGGTTGTTTATCAGGGAAGAAGGGTTTGTCTCTCATCGCATTATGTATCTATGGAACAATTATTTTCCTAGAATTAAAGGATATGTTGAAGAAGAGGTTGTTAAGATTTTTCTTGGGATAGAACGAGGGGTAAACCCTGTTATCCCAATCATGGCAGGGACTTTCAAATCACTAAATCATTGTCGAATCCAAGATAAAGGAAAATTCTTCAACTGTGCTCCTATGCTCTTCATTTGGATTTCCAGTCAACTAAGGTATCCTAATAATTTTGGATATCCTCAAATAGAATTCAGCAGTCCGTGGAATAATACAAGAAACACTATTAGAGAATTCAATAGTGCACACTAGGATCCAAAGGATCCATAATTTGCGGTTTGGATACAGTTTTTCAGTCATTTAACGACAGTAGAAGCAATTTGG

Coding sequence (CDS)

ATGCCAGAGCATAGAGTAGAGTTTACAAAAGCATATGGAAGCATAGGTGACCTTTTATACACTACCATTAATACATCAACATTGCAAGCTTTGTCAAATTTCTGGGACCCTATGTTGAAGTGTTTCACGTTCAACACGGTCAACTTAACTCCTACTATAGAAGAATATCAAGCACTTATTAGCCTACCAGTTGACAGAGGGAATAAGCCTTATATCAATGATCGAAAGTTGACTTTACAAGGGTCACTATCAAAGTTTATGGGTGACATTCATGCATCTGAGATAAAGAAACAGATGAAGACAAAAGAAGGTAGGAATTGTATTCCCATCAATTATCTCATCAATCTTGCGCATGGTTGTTTATCAGGGAAGAAGGGTTTGTCTCTCATCGCATTATGTATCTATGGAACAATTATTTTCCTAGAATTAAAGGATATGTTGAAGAAGAGGTTGTTAAGATTTTTCTTGGGATAG

Protein sequence

MPEHRVEFTKAYGSIGDLLYTTINTSTLQALSNFWDPMLKCFTFNTVNLTPTIEEYQALISLPVDRGNKPYINDRKLTLQGSLSKFMGDIHASEIKKQMKTKEGRNCIPINYLINLAHGCLSGKKGLSLIALCIYGTIIFLELKDMLKKRLLRFFLG

Homology

[Close]

BLAST of MELO3C028745 vs. NCBI nr
Match: KAA0065295.1 (uncharacterized protein E6C27_scaffold1023G00080 [Cucumis melo var. makuwa])

HSP 1 Score: 262.7 bits (670), Expect = 2.0e-66
Identity = 128/157 (81.53%), Postives = 141/157 (89.81%), Query Frame = 0


Query: 1   MPEHRVEFTKAYGSIGDLLYTTINTSTLQALSNFWDPMLKCFTFNTVNLTPTIEEYQALI 60
           MPE R EFTKAYGSIGDLLYTTINTSTLQALS+FWDP+LK FTFNT +LTPTIEEYQALI
Sbjct: 70  MPEQRAEFTKAYGSIGDLLYTTINTSTLQALSHFWDPVLKYFTFNTFDLTPTIEEYQALI 129

Query: 61  SLPVDRGNKPYINDRKLTLQGSLSKFMGDIHASEIKKQMKTKEGRNCIPINYLINLAHGC 120
           SLPVDRGNK YI DRKLTLQ SLSKFMGDIHASE+KK MKTKEGRNCIPINYLINLA GC
Sbjct: 130 SLPVDRGNKLYIYDRKLTLQRSLSKFMGDIHASELKKHMKTKEGRNCIPINYLINLARGC 189

Query: 121 LSGKKGLSLIALCIYGTIIFLELKDMLKKRLLRFFLG 158
           L GKKGLSLIALCIYGT+IF  +K  +++ +++ F+G
Sbjct: 190 LLGKKGLSLIALCIYGTVIFPRIKGYVEEEVVKIFVG 226

[Close]

BLAST of MELO3C028745 vs. NCBI nr
Match: KAA0033221.1 (uncharacterized protein E6C27_scaffold845G00100 [Cucumis melo var. makuwa])

HSP 1 Score: 262.3 bits (669), Expect = 2.7e-66
Identity = 127/157 (80.89%), Postives = 141/157 (89.81%), Query Frame = 0


Query: 1   MPEHRVEFTKAYGSIGDLLYTTINTSTLQALSNFWDPMLKCFTFNTVNLTPTIEEYQALI 60
           MPE R +F KAYGSIGDLLYTTINTSTLQALS+FWDP+LKCFTFNT +LTPTIEEYQALI
Sbjct: 70  MPEQRAKFIKAYGSIGDLLYTTINTSTLQALSHFWDPVLKCFTFNTFDLTPTIEEYQALI 129

Query: 61  SLPVDRGNKPYINDRKLTLQGSLSKFMGDIHASEIKKQMKTKEGRNCIPINYLINLAHGC 120
           SLPVDRGNK YI  RKLTLQ SLSKFMGDIHASE+KKQMKTKEGRNCIPINYLINLA GC
Sbjct: 130 SLPVDRGNKLYIYHRKLTLQRSLSKFMGDIHASELKKQMKTKEGRNCIPINYLINLARGC 189

Query: 121 LSGKKGLSLIALCIYGTIIFLELKDMLKKRLLRFFLG 158
           L GKKGLSLIALCIYGT+IF  +K  +++ +++ F+G
Sbjct: 190 LLGKKGLSLIALCIYGTVIFPRIKGYVEEEVVKIFVG 226

[Close]

BLAST of MELO3C028745 vs. NCBI nr
Match: KAA0046606.1 (glial fibrillary acidic protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 258.5 bits (659), Expect = 3.8e-65
Identity = 126/157 (80.25%), Postives = 139/157 (88.54%), Query Frame = 0


Query: 1   MPEHRVEFTKAYGSIGDLLYTTINTSTLQALSNFWDPMLKCFTFNTVNLTPTIEEYQALI 60
           MPE R EFTKAYGSI DLLYTTINTSTLQALS+FWDP+LKCFTFNT +LTPTIEEYQALI
Sbjct: 70  MPEQRAEFTKAYGSICDLLYTTINTSTLQALSHFWDPVLKCFTFNTFDLTPTIEEYQALI 129

Query: 61  SLPVDRGNKPYINDRKLTLQGSLSKFMGDIHASEIKKQMKTKEGRNCIPINYLINLAHGC 120
           SLPVDRGN  YI DRKLTLQ SLSKFMGDIHASE+KKQMKTKEGRNCIPINYLINLA GC
Sbjct: 130 SLPVDRGNNLYIYDRKLTLQRSLSKFMGDIHASELKKQMKTKEGRNCIPINYLINLARGC 189

Query: 121 LSGKKGLSLIALCIYGTIIFLELKDMLKKRLLRFFLG 158
           L  K GLSLIALCIYGT+IF  +K  +++ +++ F+G
Sbjct: 190 LLRKNGLSLIALCIYGTVIFPRIKGYVEEEVVKIFVG 226

[Close]

BLAST of MELO3C028745 vs. NCBI nr
Match: TYK16834.1 (glial fibrillary acidic protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 173.3 bits (438), Expect = 1.6e-39
Identity = 83/110 (75.45%), Postives = 98/110 (89.09%), Query Frame = 0


Query: 48  NLTPTIEEYQALISLPVDRGNKPYINDRKLTLQGSLSKFMGDIHASEIKKQMKTKEGRNC 107
           +LTPTIEEY+ALISLP+DRGNK YI DRKLT++ SLSKFMGDIHASE+KKQ+K KEGRNC
Sbjct: 3   DLTPTIEEYEALISLPIDRGNKLYIYDRKLTIERSLSKFMGDIHASELKKQIKAKEGRNC 62

Query: 108 IPINYLINLAHGCLSGKKGLSLIALCIYGTIIFLELKDMLKKRLLRFFLG 158
           IPINYLINLA GCLS KKGLSLIALCIYGTIIF  +K  +++ +++ F+G
Sbjct: 63  IPINYLINLARGCLSRKKGLSLIALCIYGTIIFPRIKGYVEEEVVKIFVG 112

[Close]

BLAST of MELO3C028745 vs. NCBI nr
Match: KAA0032013.1 (glial fibrillary acidic protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 173.3 bits (438), Expect = 1.6e-39
Identity = 83/110 (75.45%), Postives = 98/110 (89.09%), Query Frame = 0


Query: 48  NLTPTIEEYQALISLPVDRGNKPYINDRKLTLQGSLSKFMGDIHASEIKKQMKTKEGRNC 107
           +LTPTIEEY+ALISLP+DRGNK YI DRKLT++ SLSKFMGDIHASE+KKQ+K KEGRNC
Sbjct: 3   DLTPTIEEYEALISLPIDRGNKLYIYDRKLTIERSLSKFMGDIHASELKKQIKAKEGRNC 62

Query: 108 IPINYLINLAHGCLSGKKGLSLIALCIYGTIIFLELKDMLKKRLLRFFLG 158
           IPINYLINLA GCLS KKGLSLIALCIYGTIIF  +K  +++ +++ F+G
Sbjct: 63  IPINYLINLARGCLSRKKGLSLIALCIYGTIIFPRIKGYVEEEVVKIFVG 112

[Close]

BLAST of MELO3C028745 vs. ExPASy TrEMBL
Match: A0A5A7VHI3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1023G00080 PE=4 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 9.9e-67
Identity = 128/157 (81.53%), Postives = 141/157 (89.81%), Query Frame = 0


Query: 1   MPEHRVEFTKAYGSIGDLLYTTINTSTLQALSNFWDPMLKCFTFNTVNLTPTIEEYQALI 60
           MPE R EFTKAYGSIGDLLYTTINTSTLQALS+FWDP+LK FTFNT +LTPTIEEYQALI
Sbjct: 70  MPEQRAEFTKAYGSIGDLLYTTINTSTLQALSHFWDPVLKYFTFNTFDLTPTIEEYQALI 129

Query: 61  SLPVDRGNKPYINDRKLTLQGSLSKFMGDIHASEIKKQMKTKEGRNCIPINYLINLAHGC 120
           SLPVDRGNK YI DRKLTLQ SLSKFMGDIHASE+KK MKTKEGRNCIPINYLINLA GC
Sbjct: 130 SLPVDRGNKLYIYDRKLTLQRSLSKFMGDIHASELKKHMKTKEGRNCIPINYLINLARGC 189

Query: 121 LSGKKGLSLIALCIYGTIIFLELKDMLKKRLLRFFLG 158
           L GKKGLSLIALCIYGT+IF  +K  +++ +++ F+G
Sbjct: 190 LLGKKGLSLIALCIYGTVIFPRIKGYVEEEVVKIFVG 226

[Close]

BLAST of MELO3C028745 vs. ExPASy TrEMBL
Match: A0A5A7SUT0 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold845G00100 PE=4 SV=1)

HSP 1 Score: 262.3 bits (669), Expect = 1.3e-66
Identity = 127/157 (80.89%), Postives = 141/157 (89.81%), Query Frame = 0


Query: 1   MPEHRVEFTKAYGSIGDLLYTTINTSTLQALSNFWDPMLKCFTFNTVNLTPTIEEYQALI 60
           MPE R +F KAYGSIGDLLYTTINTSTLQALS+FWDP+LKCFTFNT +LTPTIEEYQALI
Sbjct: 70  MPEQRAKFIKAYGSIGDLLYTTINTSTLQALSHFWDPVLKCFTFNTFDLTPTIEEYQALI 129

Query: 61  SLPVDRGNKPYINDRKLTLQGSLSKFMGDIHASEIKKQMKTKEGRNCIPINYLINLAHGC 120
           SLPVDRGNK YI  RKLTLQ SLSKFMGDIHASE+KKQMKTKEGRNCIPINYLINLA GC
Sbjct: 130 SLPVDRGNKLYIYHRKLTLQRSLSKFMGDIHASELKKQMKTKEGRNCIPINYLINLARGC 189

Query: 121 LSGKKGLSLIALCIYGTIIFLELKDMLKKRLLRFFLG 158
           L GKKGLSLIALCIYGT+IF  +K  +++ +++ F+G
Sbjct: 190 LLGKKGLSLIALCIYGTVIFPRIKGYVEEEVVKIFVG 226

[Close]

BLAST of MELO3C028745 vs. ExPASy TrEMBL
Match: A0A5A7TXA1 (Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold114G001520 PE=4 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 1.9e-65
Identity = 126/157 (80.25%), Postives = 139/157 (88.54%), Query Frame = 0


Query: 1   MPEHRVEFTKAYGSIGDLLYTTINTSTLQALSNFWDPMLKCFTFNTVNLTPTIEEYQALI 60
           MPE R EFTKAYGSI DLLYTTINTSTLQALS+FWDP+LKCFTFNT +LTPTIEEYQALI
Sbjct: 70  MPEQRAEFTKAYGSICDLLYTTINTSTLQALSHFWDPVLKCFTFNTFDLTPTIEEYQALI 129

Query: 61  SLPVDRGNKPYINDRKLTLQGSLSKFMGDIHASEIKKQMKTKEGRNCIPINYLINLAHGC 120
           SLPVDRGN  YI DRKLTLQ SLSKFMGDIHASE+KKQMKTKEGRNCIPINYLINLA GC
Sbjct: 130 SLPVDRGNNLYIYDRKLTLQRSLSKFMGDIHASELKKQMKTKEGRNCIPINYLINLARGC 189

Query: 121 LSGKKGLSLIALCIYGTIIFLELKDMLKKRLLRFFLG 158
           L  K GLSLIALCIYGT+IF  +K  +++ +++ F+G
Sbjct: 190 LLRKNGLSLIALCIYGTVIFPRIKGYVEEEVVKIFVG 226

[Close]

BLAST of MELO3C028745 vs. ExPASy TrEMBL
Match: A0A5A7SNY0 (Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold134G001110 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 7.9e-40
Identity = 83/110 (75.45%), Postives = 98/110 (89.09%), Query Frame = 0


Query: 48  NLTPTIEEYQALISLPVDRGNKPYINDRKLTLQGSLSKFMGDIHASEIKKQMKTKEGRNC 107
           +LTPTIEEY+ALISLP+DRGNK YI DRKLT++ SLSKFMGDIHASE+KKQ+K KEGRNC
Sbjct: 3   DLTPTIEEYEALISLPIDRGNKLYIYDRKLTIERSLSKFMGDIHASELKKQIKAKEGRNC 62

Query: 108 IPINYLINLAHGCLSGKKGLSLIALCIYGTIIFLELKDMLKKRLLRFFLG 158
           IPINYLINLA GCLS KKGLSLIALCIYGTIIF  +K  +++ +++ F+G
Sbjct: 63  IPINYLINLARGCLSRKKGLSLIALCIYGTIIFPRIKGYVEEEVVKIFVG 112

[Close]

BLAST of MELO3C028745 vs. ExPASy TrEMBL
Match: A0A5D3D0S2 (Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold96G001090 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 7.9e-40
Identity = 83/110 (75.45%), Postives = 98/110 (89.09%), Query Frame = 0


Query: 48  NLTPTIEEYQALISLPVDRGNKPYINDRKLTLQGSLSKFMGDIHASEIKKQMKTKEGRNC 107
           +LTPTIEEY+ALISLP+DRGNK YI DRKLT++ SLSKFMGDIHASE+KKQ+K KEGRNC
Sbjct: 3   DLTPTIEEYEALISLPIDRGNKLYIYDRKLTIERSLSKFMGDIHASELKKQIKAKEGRNC 62

Query: 108 IPINYLINLAHGCLSGKKGLSLIALCIYGTIIFLELKDMLKKRLLRFFLG 158
           IPINYLINLA GCLS KKGLSLIALCIYGTIIF  +K  +++ +++ F+G
Sbjct: 63  IPINYLINLARGCLSRKKGLSLIALCIYGTIIFPRIKGYVEEEVVKIFVG 112

The following BLAST results are available for this feature:

BLAST of MELO3C028745 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0065295.1	2.0e-66	81.53	uncharacterized protein E6C27_scaffold1023G00080 [Cucumis melo var. makuwa]	[more]
KAA0033221.1	2.7e-66	80.89	uncharacterized protein E6C27_scaffold845G00100 [Cucumis melo var. makuwa]	[more]
KAA0046606.1	3.8e-65	80.25	glial fibrillary acidic protein-like [Cucumis melo var. makuwa]	[more]
TYK16834.1	1.6e-39	75.45	glial fibrillary acidic protein-like [Cucumis melo var. makuwa]	[more]
KAA0032013.1	1.6e-39	75.45	glial fibrillary acidic protein-like [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C028745 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C028745 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VHI3	9.9e-67	81.53	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7SUT0	1.3e-66	80.89	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold84...	[more]
A0A5A7TXA1	1.9e-65	80.25	Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5A7SNY0	7.9e-40	75.45	Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5D3D0S2	7.9e-40	75.45	Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]

BLAST of MELO3C028745 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR48200	PROTEIN, PUTATIVE-RELATED	coord: 5..155

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C028745.1	MELO3C028745.1	mRNA