MELO3C028743 (gene) Melon (DHL92) v4

Overview
NameMELO3C028743
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
Description30-kDa cleavage and polyadenylation specificity factor 30-like
Locationchr01: 5461731 .. 5465151 (+)
RNA-Seq ExpressionMELO3C028743
SyntenyMELO3C028743
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGAGACAACGCTTTCATCTCTTTTGTTGTGATACGCACCCATGTTCCGTCTCACACGACTGTCGTTCAACAGACGACAATGTCGTCATGGTCTCTATCCAATCGCCAACGCTGAAGCTCTGGCACCACCATCGTCTACAAGGGTTTCGCTTAAGGTTCTTCGAGGTTAGTCTTCTTCTTCCTTTCTTCATCCACGTCAATCTATAGAGAGAAACAGGAAGCCAAAACCGAAATCTCTCTCTCTCTCTGTTTCACTTCCAAGGCTGCCGACCAACTTCCTGTAGAAGAAGCAATCCTTCTCAAGTTCTTGAAGAAGCTTGTGATATCAAGGTTTTTCTCTACTTCTACTTCTCTTATTTTCTCTCCTTTTCTCTTTCTTTCTCAAGAAACCAAATTTTTTTGACAAAATTAGTTTAACATTCCTTGTTTATTTTCTTTTATTTTTTATTATTATTATCAATCTCTGTATTTTACACTTTGCCTGAGTATTAAATCTGTATTCTACACTTTTAAAGTTCAAAACACTCTTGCAGGAAAGAAAGGTATAATAATGTTCTTATTTGTAAATGTATAGTATTTGGATGTTACATATTAGACATATAACATGTATGAAAGAAACGTAAATGTAAAAACTGGGATTACAAGTTTCAATATATAGTTTCCTTTTGGAAAGGACATATTATAAACTCAATGCCATAAAAAATTAACCAACTCCTTCAGGGAATTGAATCATTTTAAAGGATGTATCTGTCACTTAATTCTGACAAAAGGAACCTTTCGACCAGTTGAGAGTGTTTCATTCATTTGGGCAATTTGAAGTAAGAGTTGATTGATTTTTGGAAATAAAATTATGTAAACTAACTTCTATATTTAAACAAACAAAATGAAGTAGTGAAGTGTTAATTAAAGGATTGTTTCTGAAATTTGTACTTAATTCTGTTCATAGTTCTCATCTTATTGAAACCATTGAAAATTCTAATCAAATACTAAATAGTAAACACAAACAATTTTTTATTTCTTTCATTTTCTCAATCCCTAGGTTCTTTTTTATTACATTACTGATTTTATTTGATTTGGTGAAATTGAATTATAATGAGAAATCGAAGTACAGTAACGTTTTGTTATTTATGACTACAAAGGTTCTTTTCCACATTCACATTACATTTTGCAATGAAATGCACAGGTTATCTATGATTCATCATCATCATTATTTTTATGCATACTTTTTGACTCTGTTATAAAAGTATGTTCTTGGATTTACTGAAGTTTCAATGAGTTTATTTCCAAAAAACTAGGTTCAAACCATAGTCAACTTTCCAATCTTGGAAATTCAGGGAATCAGATAGGGAGAATATTGGCCTCAAATTCGAGGTTTATAGACTTTGCGAATAGAAAATTTATTGTTCTTTTCCTCATACTCCATTTGTTAAAGTTCAAGTTGTTAAATTATTTGTTTTTTGCATTTGATTTCACATTCTTACATTCATTCTTTCATTGATTTTGGTTAAAGTTTTGCCTCAACTTTGACCGTCTTCTTATTCTTATATTGTTGCTTGGGTTCGATCACTATATTTGGCAGATATTCTATCTTAATCTTTACACACATAGCTTCGTTGTAACTTTTGTTGCAGCTGCTTGGGATGGTAGCATAGTAAGGGTGGTTGTTTCTTTGGTAGCAATTTCTTATAAATACTATTTCTCTATAGTGTATAATTAAACAAAGTTACTTAGCTTTTTACCGGGTGCTTATAGGCTTTTTGTTCTTGAATTCAATTAGTGATAAGTTTTAGTCACGGTTCGTTGTGCTTGCAAAAGAGCTGGTTTGTATTTTTATGGAAAATGTATCTATAAATAAGGGAGGTGAACAAGGTGGCTAACATATACCATTGAGTTTTGGGTTCTTTTGACACTTATGGTTCTCTTTGATTTTCTTTTAGTTCTTTGTTGCTACAATTGTTAGGATAGGATGGAAACTTGTTCAGTCATATGTAATTGTGATATTGTGAGATTTATCCAAATACTATTTAATGAGCAAGCTGGTAATTGATTGAGGCATTTGCTGTGATTTTTGGTCAGCGAGAAGTGATATTATTGAATAATTATAGTATGTTAAATGTTGATCTTCTCAATCTATGGATTGGAACTTCATAAATACCCTTTTGATTTAGTTTGCTTTAATACTTGAAGTTGATTCTCTCCAAATTTTGTGACTATTCTCCCTTTGTCACTTATGTCAAATGGAACTGTTTTCTGTAAAAATCAATCAACAAGGAGGTATCCTTTTCAGTTTTGTAACCTTTTCAGATATGGTTACTCATTTTTAATATAATTCTGCAAAGCAAATGAAATTAAAATTTTGACTCTCACATAAACCTTTTAAATACTCTAAATGACCTTATTTATTTTTGAAAGATTAGGTACTTTATTGTTAAAAGTTGGAACTTTGAGAATGGAGTTATCTGTACAAGAAGGGGTATTTGCAACTCAAAGAAGCAATGAAGCTTTTGATTTTGGTGATAATGTTATTTTGCTTTTCTTAGTCAACCAGACTACACTTTTTGTGGTGCTAACTATTCCTTATTGAATTTGTGTGTGACGCTATTTGGTTATTGATGAACAAAGTATGTTGGAGATAATTATACTGATTTGCTATTGGCTACTTAGGCTTGTGAAAAGATGATGTCCAGGATTGGTGGTTCTGTTAGTGGGGGCAATTGGAAATATGCACATGGAACTGCATATTATGGTCAAAACTTTTTACTCAAATGGCTTAAGGTTGAGATTTCATTTCTTAGATTTATAATTTTATGTAGAAATGTATATAACATGTGTACCTCATCATGTTATTTCATTGTTGTTAGTTGTAATAATGCTAATTGTTTGGCCCTCTCTATCCCTCCAGGACATCTAATTTACTCTCAGAGGTCATATTTAGTGCTCATTAAAAATGAAACTGAATTATTCTTTTTTAATCTTTGATAAGGAACATTTTTTCTTTTTCTCATAATTGAAAGAAAAATTGAAGGGTGATAACAAATTGAGGGGTGATGGACATGACAAATCTTTAACAAATTCAGGCCGAGACGACAATTTCAACAACTTAAGTGACCATTGGTATGTTATCTTCTAATCTTTTTTTATCTACATTTGTTAGAGATTTTCTATGTTTTTTTAAATTAATATCCACTATTACAAAATCACATATTGGTATATGTTTTGTAAATTTATGTAGGTGAATGAAATGAGTCTTACTAGAGGAAAAAAGATCTAACGATGATAGTAGCTCATATCTATATGATAGTATAATCTTGGACACTTGGTGAATTTTGTTTGTGTTTTGAGGGTTATCTTGTCTTGTGGTACATTCACTAAATACTTTATCTACCTTTGTATCATTTAGACCACAACTTTATTTAAG

mRNA sequence

ATGATGAGACAACGCTTTCATCTCTTTTGTTGTGATACGCACCCATGTTCCGTCTCACACGACTGTCGTTCAACAGACGACAATGTCGTCATGGTCTCTATCCAATCGCCAACGCTGAAGCTCTGGCACCACCATCGTCTACAAGGGTTTCGCTTAAGGTTCTTCGAGAGAGAAACAGGAAGCCAAAACCGAAATCTCTCTCTCTCTCTGTTTCACTTCCAAGGCTGCCGACCAACTTCCTGTAGAAGAAGCAATCCTTCTCAAGTTCTTGAAGAAGCTTGTGATATCAAGGGAATCAGATAGGGAGAATATTGGCCTCAAATTCGAGTTTTGCCTCAACTTTGACCGTCTTCTTATTCTTATATTGTTGCTTGGGTTCGATCACTATATTTGGCAGATATTCTATCTTAATCTTTACACACATAGCTTCGTTGTAACTTTTGTTGCAGCTGCTTGGGATGGTAGCATATCACGGTTCGTTGTGCTTGCAAAAGAGCTGGATAGGATGGAAACTTGTTCAGTCATATGTAATTGTGATATTGTGAGATTTATCCAAATACTATTTAATGAGCAAGCTGGTACTTTATTGTTAAAAGTTGGAACTTTGAGAATGGAGTTATCTGTACAAGAAGGGGTATTTGCAACTCAAAGAAGCAATGAAGCTTTTGATTTTGGTGATAATGCTTGTGAAAAGATGATGTCCAGGATTGGTGGTTCTGTTAGTGGGGGCAATTGGAAATATGCACATGGAACTGCATATTATGAAAAATTGAAGGGTGATAACAAATTGAGGGGTGATGGACATGACAAATCTTTAACAAATTCAGGCCGAGACGACAATTTCAACAACTTAAGTGACCATTGGTATGTGAATGAAATGAGTCTTACTAGAGGAAAAAAGATCTAACGATGATAGTAGCTCATATCTATATGATAGTATAATCTTGGACACTTGGTGAATTTTGTTTGTGTTTTGAGGGTTATCTTGTCTTGTGGTACATTCACTAAATACTTTATCTACCTTTGTATCATTTAGACCACAACTTTATTTAAG

Coding sequence (CDS)

ATGGAAACTTGTTCAGTCATATGTAATTGTGATATTGTGAGATTTATCCAAATACTATTTAATGAGCAAGCTGGTACTTTATTGTTAAAAGTTGGAACTTTGAGAATGGAGTTATCTGTACAAGAAGGGGTATTTGCAACTCAAAGAAGCAATGAAGCTTTTGATTTTGGTGATAATGCTTGTGAAAAGATGATGTCCAGGATTGGTGGTTCTGTTAGTGGGGGCAATTGGAAATATGCACATGGAACTGCATATTATGAAAAATTGAAGGGTGATAACAAATTGAGGGGTGATGGACATGACAAATCTTTAACAAATTCAGGCCGAGACGACAATTTCAACAACTTAAGTGACCATTGGTATGTGAATGAAATGAGTCTTACTAGAGGAAAAAAGATCTAA

Protein sequence

METCSVICNCDIVRFIQILFNEQAGTLLLKVGTLRMELSVQEGVFATQRSNEAFDFGDNACEKMMSRIGGSVSGGNWKYAHGTAYYEKLKGDNKLRGDGHDKSLTNSGRDDNFNNLSDHWYVNEMSLTRGKKI
Homology
[Close]
BLAST of MELO3C028743 vs. NCBI nr
Match: XP_008445183.1 (PREDICTED: 30-kDa cleavage and polyadenylation specificity factor 30 [Cucumis melo] >KAA0036926.1 30-kDa cleavage and polyadenylation specificity factor 30 [Cucumis melo var. makuwa] >TYK05548.1 30-kDa cleavage and polyadenylation specificity factor 30 [Cucumis melo var. makuwa])

HSP 1 Score: 78.6 bits (192), Expect = 4.6e-11
Identity = 43/70 (61.43%), Postives = 47/70 (67.14%), Query Frame = 0 

Query: 36  MELSVQEGVFATQRS-----NEAFDFGDN--------------ACEKMMSRIGGSVSGGN 87
           +ELSVQ+GV+ATQRS     NEAFD  DN               C KMMSRIGGSVSGGN
Sbjct: 278 LELSVQQGVWATQRSNEAKLNEAFDSADNVILIFSVNRTRHFQGCAKMMSRIGGSVSGGN 337

[Close]
BLAST of MELO3C028743 vs. NCBI nr
Match: XP_008459517.1 (PREDICTED: 30-kDa cleavage and polyadenylation specificity factor 30-like [Cucumis melo])

HSP 1 Score: 78.6 bits (192), Expect = 4.6e-11
Identity = 43/70 (61.43%), Postives = 47/70 (67.14%), Query Frame = 0 

Query: 36  MELSVQEGVFATQRS-----NEAFDFGDN--------------ACEKMMSRIGGSVSGGN 87
           +ELSVQ+GV+ATQRS     NEAFD  DN               C KMMSRIGGSVSGGN
Sbjct: 276 LELSVQQGVWATQRSNEAKLNEAFDTADNVILIFSVNRTRHFQGCAKMMSRIGGSVSGGN 335

[Close]
BLAST of MELO3C028743 vs. NCBI nr
Match: KAA0039343.1 (30-kDa cleavage and polyadenylation specificity factor 30-like [Cucumis melo var. makuwa])

HSP 1 Score: 78.6 bits (192), Expect = 4.6e-11
Identity = 43/70 (61.43%), Postives = 47/70 (67.14%), Query Frame = 0 

Query: 36  MELSVQEGVFATQRS-----NEAFDFGDN--------------ACEKMMSRIGGSVSGGN 87
           +ELSVQ+GV+ATQRS     NEAFD  DN               C KMMSRIGGSVSGGN
Sbjct: 276 LELSVQQGVWATQRSNEAKLNEAFDTADNVILIFSVNRTRHFQGCAKMMSRIGGSVSGGN 335

[Close]
BLAST of MELO3C028743 vs. NCBI nr
Match: XP_022140120.1 (30-kDa cleavage and polyadenylation specificity factor 30 [Momordica charantia])

HSP 1 Score: 78.6 bits (192), Expect = 4.6e-11
Identity = 43/70 (61.43%), Postives = 47/70 (67.14%), Query Frame = 0 

Query: 36  MELSVQEGVFATQRS-----NEAFDFGDN--------------ACEKMMSRIGGSVSGGN 87
           +ELSVQ+GV+ATQRS     NEAFD  DN               C KMMSRIGGSVSGGN
Sbjct: 275 LELSVQQGVWATQRSNEAKLNEAFDSADNVILIFSVNRTRHFQGCAKMMSRIGGSVSGGN 334

[Close]
BLAST of MELO3C028743 vs. NCBI nr
Match: XP_038894441.1 (30-kDa cleavage and polyadenylation specificity factor 30-like [Benincasa hispida])

HSP 1 Score: 78.6 bits (192), Expect = 4.6e-11
Identity = 43/70 (61.43%), Postives = 47/70 (67.14%), Query Frame = 0 

Query: 36  MELSVQEGVFATQRS-----NEAFDFGDN--------------ACEKMMSRIGGSVSGGN 87
           +ELSVQ+GV+ATQRS     NEAFD  DN               C KMMSRIGGSVSGGN
Sbjct: 276 LELSVQQGVWATQRSNEAKLNEAFDSADNVILIFSVNRTRHFQGCAKMMSRIGGSVSGGN 335

[Close]
BLAST of MELO3C028743 vs. ExPASy Swiss-Prot
Match: A9LNK9 (30-kDa cleavage and polyadenylation specificity factor 30 OS=Arabidopsis thaliana OX=3702 GN=CPSF30 PE=1 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 2.0e-09
Identity = 36/69 (52.17%), Postives = 41/69 (59.42%), Query Frame = 0 

Query: 37  ELSVQEGVFATQRS-----NEAFDFGDN--------------ACEKMMSRIGGSVSGGNW 87
           ELSVQ+GV+ATQRS     NEAFD  +N               C KM SRIGG + GGNW
Sbjct: 251 ELSVQQGVWATQRSNEAKLNEAFDSVENVILIFSVNRTRHFQGCAKMTSRIGGYIGGGNW 310

[Close]
BLAST of MELO3C028743 vs. ExPASy Swiss-Prot
Match: Q0DA50 (Zinc finger CCCH domain-containing protein 45 OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0677700 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.4e-09
Identity = 34/70 (48.57%), Postives = 43/70 (61.43%), Query Frame = 0 

Query: 36  MELSVQEGVFATQRS-----NEAFDFGDN--------------ACEKMMSRIGGSVSGGN 87
           +E+SVQ+G++ATQRS     NEAF+  +N               C KM SRIGG + GGN
Sbjct: 273 LEISVQQGIWATQRSNEAKLNEAFESIENVILIFSINRTRNFQGCAKMTSRIGGYIGGGN 332

[Close]
BLAST of MELO3C028743 vs. ExPASy TrEMBL
Match: A0A5D3C2W1 (30-kDa cleavage and polyadenylation specificity factor 30 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold178G00560 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 2.2e-11
Identity = 43/70 (61.43%), Postives = 47/70 (67.14%), Query Frame = 0 

Query: 36  MELSVQEGVFATQRS-----NEAFDFGDN--------------ACEKMMSRIGGSVSGGN 87
           +ELSVQ+GV+ATQRS     NEAFD  DN               C KMMSRIGGSVSGGN
Sbjct: 278 LELSVQQGVWATQRSNEAKLNEAFDSADNVILIFSVNRTRHFQGCAKMMSRIGGSVSGGN 337

[Close]
BLAST of MELO3C028743 vs. ExPASy TrEMBL
Match: A0A5A7T8Q5 (30-kDa cleavage and polyadenylation specificity factor 30-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold64G001410 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 2.2e-11
Identity = 43/70 (61.43%), Postives = 47/70 (67.14%), Query Frame = 0 

Query: 36  MELSVQEGVFATQRS-----NEAFDFGDN--------------ACEKMMSRIGGSVSGGN 87
           +ELSVQ+GV+ATQRS     NEAFD  DN               C KMMSRIGGSVSGGN
Sbjct: 276 LELSVQQGVWATQRSNEAKLNEAFDTADNVILIFSVNRTRHFQGCAKMMSRIGGSVSGGN 335

[Close]
BLAST of MELO3C028743 vs. ExPASy TrEMBL
Match: A0A6J1CE78 (30-kDa cleavage and polyadenylation specificity factor 30 OS=Momordica charantia OX=3673 GN=LOC111010855 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 2.2e-11
Identity = 43/70 (61.43%), Postives = 47/70 (67.14%), Query Frame = 0 

Query: 36  MELSVQEGVFATQRS-----NEAFDFGDN--------------ACEKMMSRIGGSVSGGN 87
           +ELSVQ+GV+ATQRS     NEAFD  DN               C KMMSRIGGSVSGGN
Sbjct: 275 LELSVQQGVWATQRSNEAKLNEAFDSADNVILIFSVNRTRHFQGCAKMMSRIGGSVSGGN 334

[Close]
BLAST of MELO3C028743 vs. ExPASy TrEMBL
Match: A0A1S3BC28 (30-kDa cleavage and polyadenylation specificity factor 30 OS=Cucumis melo OX=3656 GN=LOC103488286 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 2.2e-11
Identity = 43/70 (61.43%), Postives = 47/70 (67.14%), Query Frame = 0 

Query: 36  MELSVQEGVFATQRS-----NEAFDFGDN--------------ACEKMMSRIGGSVSGGN 87
           +ELSVQ+GV+ATQRS     NEAFD  DN               C KMMSRIGGSVSGGN
Sbjct: 278 LELSVQQGVWATQRSNEAKLNEAFDSADNVILIFSVNRTRHFQGCAKMMSRIGGSVSGGN 337

[Close]
BLAST of MELO3C028743 vs. ExPASy TrEMBL
Match: A0A1S3CAV8 (30-kDa cleavage and polyadenylation specificity factor 30-like OS=Cucumis melo OX=3656 GN=LOC103498632 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 2.2e-11
Identity = 43/70 (61.43%), Postives = 47/70 (67.14%), Query Frame = 0 

Query: 36  MELSVQEGVFATQRS-----NEAFDFGDN--------------ACEKMMSRIGGSVSGGN 87
           +ELSVQ+GV+ATQRS     NEAFD  DN               C KMMSRIGGSVSGGN
Sbjct: 276 LELSVQQGVWATQRSNEAKLNEAFDTADNVILIFSVNRTRHFQGCAKMMSRIGGSVSGGN 335

[Close]
BLAST of MELO3C028743 vs. TAIR 10
Match: AT1G30460.1 (cleavage and polyadenylation specificity factor 30 )

HSP 1 Score: 63.5 bits (153), Expect = 1.4e-10
Identity = 36/69 (52.17%), Postives = 41/69 (59.42%), Query Frame = 0 

Query: 37  ELSVQEGVFATQRS-----NEAFDFGDN--------------ACEKMMSRIGGSVSGGNW 87
           ELSVQ+GV+ATQRS     NEAFD  +N               C KM SRIGG + GGNW
Sbjct: 251 ELSVQQGVWATQRSNEAKLNEAFDSVENVILIFSVNRTRHFQGCAKMTSRIGGYIGGGNW 310

The following BLAST results are available for this feature:
BLAST of MELO3C028743 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008445183.14.6e-1161.43PREDICTED: 30-kDa cleavage and polyadenylation specificity factor 30 [Cucumis me... [more]
XP_008459517.14.6e-1161.43PREDICTED: 30-kDa cleavage and polyadenylation specificity factor 30-like [Cucum... [more]
KAA0039343.14.6e-1161.4330-kDa cleavage and polyadenylation specificity factor 30-like [Cucumis melo var... [more]
XP_022140120.14.6e-1161.4330-kDa cleavage and polyadenylation specificity factor 30 [Momordica charantia][more]
XP_038894441.14.6e-1161.4330-kDa cleavage and polyadenylation specificity factor 30-like [Benincasa hispid... [more]
BLAST of MELO3C028743 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
A9LNK92.0e-0952.1730-kDa cleavage and polyadenylation specificity factor 30 OS=Arabidopsis thalian... [more]
Q0DA503.4e-0948.57Zinc finger CCCH domain-containing protein 45 OS=Oryza sativa subsp. japonica OX... [more]
BLAST of MELO3C028743 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3C2W12.2e-1161.4330-kDa cleavage and polyadenylation specificity factor 30 OS=Cucumis melo var. m... [more]
A0A5A7T8Q52.2e-1161.4330-kDa cleavage and polyadenylation specificity factor 30-like OS=Cucumis melo v... [more]
A0A6J1CE782.2e-1161.4330-kDa cleavage and polyadenylation specificity factor 30 OS=Momordica charantia... [more]
A0A1S3BC282.2e-1161.4330-kDa cleavage and polyadenylation specificity factor 30 OS=Cucumis melo OX=365... [more]
A0A1S3CAV82.2e-1161.4330-kDa cleavage and polyadenylation specificity factor 30-like OS=Cucumis melo O... [more]
BLAST of MELO3C028743 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G30460.11.4e-1052.17cleavage and polyadenylation specificity factor 30 [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C028743.1MELO3C028743.1mRNA