MELO3C028735.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C028735.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionUnknown protein
Locationchr01: 16040239 .. 16040494 (-)
RNA-Seq ExpressionMELO3C028735.jh1
SyntenyMELO3C028735.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCATTTCGCTTGGACAAGGATACTCGTTCAAGTTCAGACCCAACCTCGTGGGGACGACATTGTTTTTCTGTAGCTTCACATGGACTGGACAACACCAAATCTACTGGTTCAATATCTTTGATGACAAAGGGGATGTGGGGAAATGCACTACATGCAGATGGATCATTCATGAATATAGCATGTGCTTGCAAGACCCAAAAAACCCTGGCAAAGTTATATGCTATAACTACGGAGATAAGGAGCCAAGCATCGT

mRNA sequence

ATGTCATTTCGCTTGGACAAGGATACTCGTTCAAGTTCAGACCCAACCTCGTGGGGACGACATTGTTTTTCTGTAGCTTCACATGGACTGGACAACACCAAATCTACTGGTTCAATATCTTTGATGACAAAGGGGATGTGGGGAAATGCACTACATGCAGATGGATCATTCATGAATATAGCATGTGCTTGCAAGACCCAAAAAACCCTGGCAAAGTTATATGCTATAACTACGGAGATAAGGAGCCAAGCATCGT

Coding sequence (CDS)

ATGTCATTTCGCTTGGACAAGGATACTCGTTCAAGTTCAGACCCAACCTCGTGGGGACGACATTGTTTTTCTGTAGCTTCACATGGACTGGACAACACCAAATCTACTGGTTCAATATCTTTGATGACAAAGGGGATGTGGGGAAATGCACTACATGCAGATGGATCATTCATGAATATAGCATGTGCTTGCAAGACCCAAAAAACCCTGGCAAAGTTATATGCTATAACTACGGAGATAAGGAGCCAAGCATCG

Protein sequence

MSFRLDKDTRSSSDPTSWGRHCFSVASHGLDNTKSTGSISLMTKGMWGNALHADGSFMNIACACKTQKTLAKLYAITTEIRSQAS
Homology
BLAST of MELO3C028735.jh1 vs. NCBI nr
Match: KAE8649706.1 (hypothetical protein Csa_012067 [Cucumis sativus])

HSP 1 Score: 142 bits (358), Expect = 9.57e-42
Identity = 71/84 (84.52%), Postives = 74/84 (88.10%), Query Frame = 0

Query: 1  MSFRLDKDTRSSSDPTSWGRHCFSVASHGLDNTKSTGSISLMTKGMWGNALHADGSFMNI 60
          MSF LDK TRSSSDPTSWGR CFS ASHGLDNTKSTGS+S  TKGM GNA HA GSFMNI
Sbjct: 1  MSFHLDKATRSSSDPTSWGRPCFSAASHGLDNTKSTGSMSSTTKGMQGNAPHAHGSFMNI 60

Query: 61 ACACKTQKTLAKLYAITTEIRSQA 84
          ACACKT+KTLAK +AITTEIRSQA
Sbjct: 61 ACACKTRKTLAKKFAITTEIRSQA 84

BLAST of MELO3C028735.jh1 vs. NCBI nr
Match: KAE8649710.1 (hypothetical protein Csa_012088, partial [Cucumis sativus])

HSP 1 Score: 109 bits (273), Expect = 1.92e-28
Identity = 55/69 (79.71%), Postives = 58/69 (84.06%), Query Frame = 0

Query: 15  PTSWGRHCFSVASHGLDNTKSTGSISLMTKGMWGNALHADGSFMNIACACKTQKTLAKLY 74
           P   GR CFS ASHGLDNTKSTGS+S  TKGM GNA HA GSFMNIACACKT+KTLAK +
Sbjct: 74  PNLVGRPCFSAASHGLDNTKSTGSMSSTTKGMQGNAPHAHGSFMNIACACKTRKTLAKKF 133

Query: 75  AITTEIRSQ 83
           AITTEIRSQ
Sbjct: 134 AITTEIRSQ 142

BLAST of MELO3C028735.jh1 vs. NCBI nr
Match: KAE8649755.1 (hypothetical protein Csa_023757, partial [Cucumis sativus])

HSP 1 Score: 77.4 bits (189), Expect = 1.10e-16
Identity = 37/46 (80.43%), Postives = 39/46 (84.78%), Query Frame = 0

Query: 27 SHGLDNTKSTGSISLMTKGMWGNALHADGSFMNIACACKTQKTLAK 72
          SHGLDNTKSTGS+S  TKGM GNA HADGSFMNIACACKT+K   K
Sbjct: 1  SHGLDNTKSTGSMSSTTKGMQGNAPHADGSFMNIACACKTRKNPGK 46

BLAST of MELO3C028735.jh1 vs. NCBI nr
Match: KAE8649752.1 (hypothetical protein Csa_023768, partial [Cucumis sativus])

HSP 1 Score: 76.6 bits (187), Expect = 2.17e-16
Identity = 36/42 (85.71%), Postives = 38/42 (90.48%), Query Frame = 0

Query: 27 SHGLDNTKSTGSISLMTKGMWGNALHADGSFMNIACACKTQK 68
          SHGLDNTKSTGS+S  TKGM GNA HADGSFMNIACACKT+K
Sbjct: 1  SHGLDNTKSTGSMSSTTKGMQGNAPHADGSFMNIACACKTRK 42

BLAST of MELO3C028735.jh1 vs. NCBI nr
Match: KAE8649754.1 (hypothetical protein Csa_023747, partial [Cucumis sativus])

HSP 1 Score: 56.6 bits (135), Expect = 1.02e-08
Identity = 27/32 (84.38%), Postives = 28/32 (87.50%), Query Frame = 0

Query: 27 SHGLDNTKSTGSISLMTKGMWGNALHADGSFM 58
          SHGLDNTKSTGS+S  TKGM GNA HADGSFM
Sbjct: 1  SHGLDNTKSTGSMSSTTKGMQGNAPHADGSFM 32

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8649706.19.57e-4284.52hypothetical protein Csa_012067 [Cucumis sativus][more]
KAE8649710.11.92e-2879.71hypothetical protein Csa_012088, partial [Cucumis sativus][more]
KAE8649755.11.10e-1680.43hypothetical protein Csa_023757, partial [Cucumis sativus][more]
KAE8649752.12.17e-1685.71hypothetical protein Csa_023768, partial [Cucumis sativus][more]
KAE8649754.11.02e-0884.38hypothetical protein Csa_023747, partial [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..20

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C028735.jh1.t1MELO3C028735.jh1.t1mRNA